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Canine circovirus (CanineCV), which is a new mammalian circovirus first reported in the United States in 2012, mainly causes diarrhea and vomiting in dogs. As CanineCV evolves and new subtypes emerge, there is an urgent need for new detection technologies to improve the sensitivity and detection rates of viruses in complex scenarios. A chip digital PCR(cdPCR) assay was established for the detection of CanineCV in this study. The results showed good reproducibility, specificity and a linear relationship; the minimum detection limit of CanineCV by cdPCR was 6.62 copies/μL, which is 10 times more sensitive than quantitative real-time PCR (qPCR). The qPCR-positive detection rate was 1 %, while CanineCV cdPCR (2.1 %) exhibited a greater positive detection rate. Fifteen complete genomes were sequenced and subdivided into CanineCV-1 and CanineCV-3. In conclusion, we developed a rapid, reliable, and specific cdPCR method for screening and monitoring canine CV.

Seeking food security, contemporary Chinese agriculture has followed a trajectory of overfertilization and associated environmental problems, hence the need for nitrogen-balancing practices that do not compromise yield and quality. Here we present a national meta-analysis using 224 studies with 1972 comparisons to quantify the potential to reduce nitrogen (N) fertilization to improve environmental outcomes while maintaining yield and grain protein. We calculated a nitrogen reduction ratio (NRR), as 100 × ( N _C − N _T )/ N _C ; where N is N fertilizer rate and subscripts indicate farmer practice (C) and reduced N rate treatment (T). Our meta-analysis showed that the NRR that maintained yield and grain protein content at the level of current practice was up to 10% in wheat and up to 30% in maize and rice. Larger yield-neutral NRR could be achieved in more fertile, heavier-textured soils, and with practices including enhanced-efficiency N fertilizer, combined application of organic and inorganic N fertilizer, and incorporated straw. Assuming a reduction in N fertilizer usage by 10% for wheat and by 30% for maize and rice in the current cropping area, there is a potential to save 5.7 Mt N yr ^−1 ; reduce loss of reactive nitrogen by 1.26 Mt N yr ^−1 , equivalent to 63% of annual total Nr losses for rice in China, reduce N-related greenhouse emissions by 75.2 Mt CO _2 -eq yr ^−1 , equivalent to 14.5%–25% of the emissions associated with the N fertilizer chain in China; and improve N use efficiency by 23%. Our results highlight the feasibility of maintaining yield and grain protein, and achieving substantial environmental benefits with reduced fertilization rate, and the environmental and agronomic scenarios where these outcomes are more likely.

Porcine deltacoronavirus (PDCoV) has caused enormous economic losses to the global pig industry. However, the immune escape mechanism of PDCoV remains to be fully clarified. Transcriptomic analysis revealed a high abundance of interferon (IFN)-induced protein with tetratricopeptide repeats 3 (IFIT3) transcripts after PDCoV infection, which initially implied a correlation between IFIT3 and PDCoV. Further studies showed that PDCoV nsp5 could antagonize the host type I interferon signaling pathway by cleaving IFIT3. We demonstrated that PDCoV nsp5 cleaved porcine IFIT3 (pIFIT3) at Gln-406. Similar cleavage of endogenous IFIT3 has also been observed in PDCoV-infected cells. The pIFIT3-Q406A mutant was resistant to nsp5-mediated cleavage and exhibited a greater ability to inhibit PDCoV infection than wild-type pIFIT3. Furthermore, we found that cleavage of IFIT3 is a common characteristic of nsp5 proteins of human coronaviruses, albeit not alphacoronavirus. This finding suggests that the cleavage of IFIT3 is an important mechanism by which PDCoV nsp5 antagonizes IFN signaling. Our study provides new insights into the mechanisms by which PDCoV antagonizes the host innate immune response. IMPORTANCE Porcine deltacoronavirus (PDCoV) is a potential emerging zoonotic pathogen, and studies on the prevalence and pathogenesis of PDCoV are ongoing. The main protease (nsp5) of PDCoV provides an excellent target for antivirals due to its essential and conserved function in the viral replication cycle. Previous studies have revealed that nsp5 of PDCoV antagonizes type I interferon (IFN) production by targeting the interferon-stimulated genes. Here, we provide the first demonstration that nsp5 of PDCoV antagonizes IFN signaling by cleaving IFIT3, which affects the IFN response after PDCoV infection. Our findings reveal that PDCoV nsp5 is an important interferon antagonist and enhance the understanding of immune evasion by deltacoronaviruses [ABSTRACT FROM AUTHOR]