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While macroinvertebrate dispersal operates at the individual level, predictions of their dispersal capabilities often rely on indirect proxies rather than direct measurements. To gain insight into the dispersal of individual specimens, it is crucial to mark (label) and capture individuals. Isotopic enrichment with 15N is a non‐invasive method with the potential of labelling large quantities of macroinvertebrates. While the analysis of 15N is widely utilised in food web studies, knowledge on the specific utility of isotopic enrichment with 15N for mass labelling of macroinvertebrate individuals across different taxa and feeding types is limited. Previous studies have focused on single species and feeding types, leaving gaps in our understanding of the broader applicability of this method. Therefore, this study aimed to test and compare isotopic mass enrichment across several macroinvertebrate taxa and feeding types. We released 15NH4Cl at five stream reaches in North‐Rhine Westphalia, Germany, and successfully enriched 12 distinct macroinvertebrate taxa (Crustacea and Insecta). Significant enrichment was achieved in active and passive filter feeders, grazers, shredders and predators, and predominantly showed positive correlations with the enrichment of the taxa's main food sources phytobenthos and particulate organic matter. Enrichment levels rose rapidly and peaked at distances between 50 m and 300 m downstream of the isotopic inlet; significant enrichment occurred up to 2000 m downstream of the isotopic inlet in all feeding types. Macroinvertebrate density estimates on the stream bottom averaged to a total of approximately 3.4 million labelled individuals of the 12 investigated taxa, thus showing the high potential of isotopic (15N) enrichment as a non‐invasive method applicable for mass labelling across different macroinvertebrate feeding types. Hence, isotopic enrichment can greatly assist the analysis of macroinvertebrate dispersal through mark‐and‐recapture experiments, as it allows to measure the movement at the level of individual specimens. [ABSTRACT FROM AUTHOR]

This paper introduces and summarises the main outcomes of the 19th workshop of the International Association for Phytoplankton Taxonomy and Ecology held in Tiszafüred, Hungary, Tisza Balneum Hotel, from 23 to 30 September 2022. The selected theme of the workshop was "Trait-Based Approaches in Micro-Algal Ecology". The discussions presented during the workshop sessions resulted in the 18 articles contained in this Special Issue. There are 6 main thematic aspects developed by the participants: 1. Shape and size: are these traits easy to measure? 2. Spatial scales: when and where to look for microalgae? 3. Climate and extremes of ecological gradients: hot topics of this century. 4. Metaphyton and metaphytic habitats: life beyond plankton and benthos. 5. Microalgae in water management: phycology in practice. 6. Traditional and new methods: perspectives and comments. Trait-based approaches in microalgae ecology, although requiring further investigation and methodological development, represent a valid tool for refining the analysis of environmental variability in aquatic ecosystems. The papers presented in this Special Issue demonstrate that these approaches are extremely useful not only in the study of planktic algae but constitute a thoughtful method for the analysis of benthic and metaphytic microalgae in a wide variety of aquatic ecosystems. [ABSTRACT FROM AUTHOR]

Abstract While macroinvertebrate dispersal operates at the individual level, predictions of their dispersal capabilities often rely on indirect proxies rather than direct measurements. To gain insight into the dispersal of individual specimens, it is crucial to mark (label) and capture individuals. Isotopic enrichment with 15N is a non‐invasive method with the potential of labelling large quantities of macroinvertebrates. While the analysis of 15N is widely utilised in food web studies, knowledge on the specific utility of isotopic enrichment with 15N for mass labelling of macroinvertebrate individuals across different taxa and feeding types is limited. Previous studies have focused on single species and feeding types, leaving gaps in our understanding of the broader applicability of this method. Therefore, this study aimed to test and compare isotopic mass enrichment across several macroinvertebrate taxa and feeding types. We released 15NH4Cl at five stream reaches in North‐Rhine Westphalia, Germany, and successfully enriched 12 distinct macroinvertebrate taxa (Crustacea and Insecta). Significant enrichment was achieved in active and passive filter feeders, grazers, shredders and predators, and predominantly showed positive correlations with the enrichment of the taxa's main food sources phytobenthos and particulate organic matter. Enrichment levels rose rapidly and peaked at distances between 50 m and 300 m downstream of the isotopic inlet; significant enrichment occurred up to 2000 m downstream of the isotopic inlet in all feeding types. Macroinvertebrate density estimates on the stream bottom averaged to a total of approximately 3.4 million labelled individuals of the 12 investigated taxa, thus showing the high potential of isotopic (15N) enrichment as a non‐invasive method applicable for mass labelling across different macroinvertebrate feeding types. Hence, isotopic enrichment can greatly assist the analysis of macroinvertebrate dispersal through mark‐and‐recapture experiments, as it allows to measure the movement at the level of individual specimens.

The Joint Danube Survey (JDS) is a regular transnational survey to monitor the quality of the Danube and its main tributaries, in accordance with the EU Water Framework Directive. During the JDS4 in 2019, conventional methods to monitor selected biological quality elements were complemented with DNA metabarcoding.All together 72 phytobenthos samples were collected along the Danube and its major tributaries within the JDS4, using light microscopy and DNA metabarcoding amplifying a fragment of the rbcL marker gene. The (i) applicability of DNA metabarcoding to identify diatom communities compared to microscopy; (ii) diversity metrics between DNA metabarcoding and microscopy analysis and (iii) the usability of DNA metabarcoding for routine monitoring and assessment of the Danube under future JDS surveys were investigated.Diatom communities resulting from light microscopy and DNA metabarcoding assessments share 26.5% of all taxa which corresponds to 64.3% when considering relative abundances. Discrepancies originate from biases both from metabarcoding, e.g. missing taxa from the reference library, and from microscopy, e.g. overlooking of hardly visible taxa. Microscopy detected more taxa in total but metabarcoding revealed a higher alpha diversity, detecting also very rare taxa in a given sample. Molecular and microscopy based Specific Pollution Sensitivity Index (IPS) values correlated significantly but differences were detected at several sites due to the differences in community composition and the overestimation of large taxa by metabarcoding. Although both methods showed a decreasing trend of IPS along the Danube, the metabarcoding based IPS covered a higher range of quality classes indicating lower values for downstream sites and the tributaries.We suggest that metabarcoding provides a standardisable and efficient tool in biomonitoring, being more distinctive among quality classes than microscopy. Due to the high sequencing depth, it is able to detect a higher diversity on genetic level in a time- and cost-efficient manner that should be implemented in future quality assessment tools. We recommend its use in future biomonitoring surveys, for now, as a complementary method to conventional ones.

The removal of the two dams on the Sélune River since 2019 has led to profound changes in the aquatic ecosystem. Lentic habitats bordered by forest had shifted to new conditions (running water and sparsely vegetated riverbanks) therefore shaping organisms’ assemblies. We studied how the reestablishment of aquatic lotic habitats in interaction with riparian vegetation could mediate the restoration of important ecological functions in the new river. Six stations located along the river continuum were surveyed for 3 years after dam removal: two control stations upstream the former reservoir, three restored stations within the former reservoir, and one control station downstream. We monitored physico-chemical characteristics, phytobenthos biomass and the river’s benthic metabolism, and assessed the functional composition of macroinvertebrate communities. We compared the recorded variables among upstream, downstream and restored sampling stations. We observed a rapid recolonization by invertebrates, but a still low phytobenthic primary production in restored stations. Such a low primary productivity was also reflected in the functional composition of invertebrate communities. Three years after dam removal, there was still a significant time lag between communities recovery and expected ecosystem functioning restoration. We observed a quick colonization by aquatic running-water invertebrate communities of new lotic reaches, but a slower recovery of important ecological functions rates such as those observed in control stations.

Eutrophication impairs lake ecosystems at a global scale. In this context, as benthic microalgae are well-established warnings for a large range of stressors, particularly nutrient enrichment, the Water Framework Directive required the development of diatom-based methods to monitor lake eutrophication. Here, we present the diatom-based index we developed for French lakes, named IBDL (Indice Biologique Diatomées en Lacs). Data were collected in 93 lakes from 2015 to 2020. A challenge arose from the discontinuous pressure gradient of our dataset, especially the low number of nutrient-impacted lakes. To analyze the data we opted for the so-called "Threshold Indicator Taxa ANalysis" method, which makes it possible to determine a list of "alert taxa." We obtained a multimetric index based on specific pressure gradients (Kjeldahl nitrogen, suspended matter, biological oxygen demand, and total phosphorous). Considering the European intercalibration process, the very good correlation between IBDL and the common metric (R2 from 0.52 to 0.87 according to the lake alkalinity type) makes us very confident in our ability to match future IBDL quality thresholds with European standards. The IBDL proved at last to be particularly relevant as it has a twofold interest: an excellent relationship with total phosphorus (R2 from 0.63 to 0.83 according to the lake alkalinity type) and a possible application to any lake metatype. Its complementarity with macrophyte-based indices moreover justifies the use of at least two primary producer components for lake ecological status classification. [ABSTRACT FROM AUTHOR]

Phytobenthos, major primary producers in freshwater, may be periodically exposed to herbicides through runoff, spray drift, and leaching, but experimental work on their response to herbicides is limited. Outdoor flumes were used to measure the recovery of intact phytobenthic biofilms, following a short-term pulse to a glyphosate-based herbicide (GBH) and chlorotoluron (CLT), singly or as a mixture (GBHC). Two days following the removal of the herbicides, significant declines in biomass and rates of areal gross maximum photosynthesis were recorded in GBH and GBHC-treated flumes. Herbicide pulses negatively impacted the biomass of phytobenthos, measured as chlorophyll a, which in turn may have alleviated resource limitation, evidenced by significant increases in biomass-specific rates of gross maximum photosynthesis. After 4.5 days, biomass concentrations were similar in controls and treatments, indicating biofilm recovery in the GBH and GBHC biofilms, though the proportion of green algae relative to diatoms was significantly higher in GBH and GBHC-impacted biofilms. Significant increases were recorded in the Trophic Diatom Index (TDI), indicating benthic diatom development along different trajectories, following the herbicide pulse. Collectively, these results indicate greater insights into herbicide impacts on phytobenthos may be gained by working with the whole phytobenthic community.

The structure of phytobenthic diatom communities was studied to reveal differences between natural and channelized river sections in Slovenia. As part of the national monitoring of surface waters, samples of phytobenthos were collected at 85 sites throughout the country according to standard protocols. At the same time, basic environmental parameters were also assessed. Trophic (TI) and saprobic (SI) indices were calculated based on diatoms and other algae, while diversity indices and gradient analyses were performed only for the diatom community. The results showed that channelized rivers harbor significantly more diverse benthic diatom communities than natural sections, mainly due to the significantly higher number of motile diatom taxa that are able to take advantage of more nutrient-rich and less-shaded river sections because of their high adaptability. Selected environmental parameters explained 34% of the variability in diatom community structure when taxa were classified into ecological types. The removal of Achnanthidium minutissimum yielded clearer results (24.1%) than the total species matrix (22.6%). Therefore, we suggest excluding this taxon from calculations of TI, SI, or other indices when it is determined as A. minutissimum complex, because A. minutissimum complex was most abundant in both types of reaches in our study and has a wide ecological amplitude, which reduces the indicative power of the diatom community in the evaluation of environmental conditions and ecological status. [ABSTRACT FROM AUTHOR]

Phytobenthos, major primary producers in freshwater, may be periodically exposed to herbicides through runoff, spray drift, and leaching, but experimental work on their response to herbicides is limited. Outdoor flumes were used to measure the recovery of intact phytobenthic biofilms, following a short-term pulse to a glyphosate-based herbicide (GBH) and chlorotoluron (CLT), singly or as a mixture (GBHC). Two days following the removal of the herbicides, significant declines in biomass and rates of areal gross maximum photosynthesis were recorded in GBH and GBHC-treated flumes. Herbicide pulses negatively impacted the biomass of phytobenthos, measured as chlorophyll a, which in turn may have alleviated resource limitation, evidenced by significant increases in biomass-specific rates of gross maximum photosynthesis. After 4.5 days, biomass concentrations were similar in controls and treatments, indicating biofilm recovery in the GBH and GBHC biofilms, though the proportion of green algae relative to diatoms was significantly higher in GBH and GBHC-impacted biofilms. Significant increases were recorded in the Trophic Diatom Index (TDI), indicating benthic diatom development along different trajectories, following the herbicide pulse. Collectively, these results indicate greater insights into herbicide impacts on phytobenthos may be gained by working with the whole phytobenthic community. [ABSTRACT FROM AUTHOR]

Mediterranean lakes present particular challenges when developing ecological assessment techniques, due partly to long histories of human activity in their catchments but also to strong interactions with climate, intensifying in recent decades due to global warming. A survey of diatoms in lakes in Greece revealed both a strong nutrient gradient and a salinity gradient. It is necessary to disentangle these when assessing ecological status in order that appropriate measures for restoring good ecological status are applied. Two approaches were used to develop a Water Framework Directive-compatible metric for assessing ecological status using diatoms. The strongest relationship was obtained using weighted averaging, but an alternative metric, generated by rescaling a well-established and widely used diatom metric performed only slightly less well. The limited number of lakes in Greece resulted in a small dataset, creating a risk of overfitting models and the rescaled metric has the advantage of drawing on a broader autecological knowledge base. Supplementary metrics to evaluate salinity are also proposed in order to ensure that lakes subject to this pressure are clearly differentiated from those where nutrient impacts predominate. Approaches to defining reference conditions and status class boundaries draw on established criteria developed for Water Framework Assessments in Europe to ensure that status assessments in Greece reflect similar levels of ambition to those established elsewhere in the European Union.

The species composition of benthic algae changes as water phosphorus concentrations increase, and these changes can be used for ecological status assessment according to the Water Framework Directive. Natural background phosphorus concentrations in rivers and streams that are unaffected by anthropogenic impacts are usually low. Running waters draining catchments with deposits of marine clay, however, may have enhanced phosphorus concentrations, because the clay is naturally rich in apatite. Almost all clay rich areas have been cultivated for centuries, however, and fertilization has increased the soil phosphorus levels. It has, therefore, been difficult to disentangle natural from anthropogenically enhanced phosphorus in streams draining clay rich areas. We compared water phosphorus concentrations, and the Periphyton Index of Trophic Status PIT, between clay and non-clay, impacted and unimpacted rivers in Norway. We found that water phosphorus concentrations and the PIT index were higher in unimpacted clay rivers than in unimpacted non-clay rivers, indicating that natural phosphorus concentrations in clay rivers are indeed enhanced compared to rivers without deposits of marine clay. In addition, phosphate-P contributed 18–23% to total phosphorus in unimpacted clay rivers, but 33–37% in unimpacted and impacted non-clay rivers and clay rivers affected by agriculture. This indicates that the total phosphorus in unimpacted clay rivers is less bioavailable than in non-clay rivers and in impacted clay rivers. Water total phosphorus concentrations in unimpacted clay rivers significantly increased with catchment clay cover. Based on these findings, we derived new status class boundaries for the PIT index in clay rivers. Clay rivers are suggested to be assessed in only two status classes, i.e., “good or better” or “moderate or worse”, respectively. The good/moderate status class boundary for the PIT index was shown to increase with increasing catchment clay cover.

The structure of phytobenthic diatom communities was studied to reveal differences between natural and channelized river sections in Slovenia. As part of the national monitoring of surface waters, samples of phytobenthos were collected at 85 sites throughout the country according to standard protocols. At the same time, basic environmental parameters were also assessed. Trophic (TI) and saprobic (SI) indices were calculated based on diatoms and other algae, while diversity indices and gradient analyses were performed only for the diatom community. The results showed that channelized rivers harbor significantly more diverse benthic diatom communities than natural sections, mainly due to the significantly higher number of motile diatom taxa that are able to take advantage of more nutrient-rich and less-shaded river sections because of their high adaptability. Selected environmental parameters explained 34% of the variability in diatom community structure when taxa were classified into ecological types. The removal of Achnanthidium minutissimum yielded clearer results (24.1%) than the total species matrix (22.6%). Therefore, we suggest excluding this taxon from calculations of TI, SI, or other indices when it is determined as A. minutissimum complex, because A. minutissimum complex was most abundant in both types of reaches in our study and has a wide ecological amplitude, which reduces the indicative power of the diatom community in the evaluation of environmental conditions and ecological status.

Seaweed valuables have been researched a lot in the last decades but there is a lack of information on brackish seaweed at the eastern part of the Baltic Sea. Previous research shows that Baltic seaweed can be used as a source for phycocolloids as well as for bioenergy. The amount of available usable biomass is not clear, also seaweed in brackish seawater does not reach the dimensions such as the same species in Western parts of the Baltic Sea where the salinity is higher. Therefore, the use of this biomass must be smart to create economic benefit. Three abundant Baltic brackish seaweed species were chosen, to represent green, brown and red seaweed groups and an in-depth information analysis was made to clarify possible focus substances that could be extracted from these species. In this paper we summarize literature of common seaweed components, traditional extraction technology, and potential amount in seaweed and give an overview of novel methods for extraction of seaweed bioactive compounds.

The seaweed Caulerpa cylindracea Sonder is one of the most important invaders on Mediterranean rocky shores. However, many driving pressures affecting its spread are poorly understood and seem to involve the interactions between abiotic and biotic factors. We studied the invasiveness of C. Cylindracea on two shallow vermetid platforms with a con­trasting ecological status on which C. Cylindracea was first detected simultaneously 15 years ago. The cover values of C. Cylindracea and the other macroalgal species were assessed for one year, embracing the whole platform width. Caulerpa cylindracea cover was higher on the platform that had a low ecological status, especially during warmer months at the outer seaward margin. The ecological status of the overstory of native species seems to be a key point conditioning the success of C. Cylindracea invasiveness on these platforms.

We studied three commonly used bioindicator groups: phytoplankton, phytobenthos and benthic invertebrate communities’ structure patterns in transitions between lotic and lentic habitats as consequences of two consecutive large dams constructed in the early twentieth century on the intermediate reach of a lowland river in Normandy (NW, France), the Selune. According to sampling station position along the river, including two in the two reservoir lakes, we defined three sorts of transitions, from upstream to downstream: lentic to lotic transition (hereafter len-lot), lentic to lentic transition (hereafter len-len), within the two reservoir lakes, and lentic to lotic transition (hereafter len-lot).Lot-len transition, imposed by damming, and the recovery of lotic character of the river afterward dams, promoted different diversity patterns for the studied organisms’ groups. Phytobenthos’ α diversity significantly incresed in the len-lot transition, and the highest β diversity score was observed in the lot-len. Both, habitat conditions and spatial controls drove phytobenthos community structure. Benthic invertebrate community was mainly shaped by habitat conditions. Invertebrate’s α diversity significantly changed in the lot-len and len-lot transitions, with the β diversity score being the highest in the lot-len transition. Community’s traits composition of invertebrates best fitted predictions on lotic- and lentic- type communities. Phytoplankton’s α diversity remained unchanged in the transitions and subsequently β diversity scores were low.According to the results, we proposed three classes of organisms based on their response to river damming: i) organisms indifferent or tolerant to dams effect, like phytoplankton communities in this study, that were neither hampered by changes in water flow velocity, and did not display dispersal limitation neither; ii) organisms sensitive to habitat conditions shift but not limited in their dispersal capacity by the dam, like benthic invertebrates and phytobenthos in this study. Benthic invertebrate community and phytobenthos communities differed in their response likely due to their differential dispersal capabilities and niche breadth; iii) organisms limited in their dispersal by the dam, not represented in this study.Riverine organisms best tracked transitions, while β diversity assessment revealed as the most useful metric to disentangle the relative contribution of dispersal limitation or habitat modification provoked by multiple dams.

The aims of this paper were to describe seasonal changes in the qualitative and quantitative composition of diatom taxa and the potential application of benthic diatoms for ecological status evaluation. Diatom indices (IPS and TI) were calculated from data from three different locations along a longitudinal profile of the Bunica, a small karstic river in Bosnia and Herzegovina. A total of 147 taxa were recorded in 12 samples. The most common taxa were Meridion circulare (Greville) C.Agardh and Ulnaria ulna (Nitzsch) Compère. Physical and chemical analyses showed low concentrations of nutrients, good oxygenation, typical pH for carbonate bed/origin and generally oligotrophic conditions and high ecological status. All sites had similar physico-chemical conditions and there were only few seasonal differences. Ordination of the diatom data showed that samples showed neither longitudinal nor seasonal patterns. Median value for IPS (16.8) and for TI (7.3) can be possible "expected" values for ecological status assessment for small karstic rivers in the Mediterranean region. We propose the use of the phytobenthos Intercalibration Common Metric (pICM - an index that combines the IPS and TI) as a national metric for countries developing WFD diatom methods at a late stage. One situation is described, and a solution, which is potentially transferable to other locations in Bosnia and Herzegovina and also to other countries facing similar challenges. [ABSTRACT FROM AUTHOR]

In this paper, we report new records of rare diatoms that have recently been found in Southern Poland. Planothidium nanum was found only in the upper reaches of the Centuria River, which is not exposed to human influence, while Navicula flandriae was found in two rivers (the Bolina and the Mleczna) affected by salt mine water from hard coal mines. The impact of anthropogenic salinity on diatom communities is as yet poorly documented. Therefore, we conducted a survey on this phenomenon. We surveyed seven sampling sites for diatom assemblages and habitat characteristics, including three sampling sites impacted by mine water. Navicula flandriae was recorded at both sampling sites affected by salt mine water and in two other rivers (the Centuria and the Mitręga), indicating its wide preference for salinity. We confirmed the occurrence of P. nanum at the same site where this species was found and described in our previous paper. In addition, we recorded the occurrence of this species at two other sites in habitats with similar characteristics (lower reaches of the Centuria and Wiercica rivers). Our results indicate a more common occurrence of N. flandriae and P. nanum, which means that further monitoring of diatoms is necessary. [ABSTRACT FROM AUTHOR]

While macroinvertebrate dispersal operates at the individual level, predictions of their dispersal capabilities often rely on indirect proxies rather than direct measurements. To gain insight into the dispersal of individual specimens, it is crucial to mark (label) and capture individuals. Isotopic enrichment with 15 N is a non-invasive method with the potential of labelling large quantities of macroinvertebrates. While the analysis of 15 N is widely utilised in food web studies, knowledge on the specific utility of isotopic enrichment with 15 N for mass labelling of macroinvertebrate individuals across different taxa and feeding types is limited. Previous studies have focused on single species and feeding types, leaving gaps in our understanding of the broader applicability of this method. Therefore, this study aimed to test and compare isotopic mass enrichment across several macroinvertebrate taxa and feeding types. We released 15 NH 4 Cl at five stream reaches in North-Rhine Westphalia, Germany, and successfully enriched 12 distinct macroinvertebrate taxa (Crustacea and Insecta). Significant enrichment was achieved in active and passive filter feeders, grazers, shredders and predators, and predominantly showed positive correlations with the enrichment of the taxa's main food sources phytobenthos and particulate organic matter. Enrichment levels rose rapidly and peaked at distances between 50 m and 300 m downstream of the isotopic inlet; significant enrichment occurred up to 2000 m downstream of the isotopic inlet in all feeding types. Macroinvertebrate density estimates on the stream bottom averaged to a total of approximately 3.4 million labelled individuals of the 12 investigated taxa, thus showing the high potential of isotopic ( 15 N) enrichment as a non-invasive method applicable for mass labelling across different macroinvertebrate feeding types. Hence, isotopic enrichment can greatly assist the analysis of macroinvertebrate dispersal through mark-and-recapture experiments, as it allows to measure the movement at the level of individual specimens., Competing Interests: The authors declare that they have no competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)

Human activities, increasing precipitation, and changes in land run-off deliver a large input of allochthonous nutrients into coastal waters including terrigenous dissolved organic matter (tDOM). Increased subsidies of tDOM into the coastal water are expected to reduce light availability and thus might be one of the factors causing coastal ocean darkening. To investigate the effect of increased tDOM input and thus limitation in light availability on primary production as well as the transfer to higher trophic levels (zooplankton), we conducted a large-scale indoor mesocosm “Planktotrons” experiment with natural (pelagic and benthic) plankton communities from the North Sea. We simulated a coastal ocean system with daily light and tidal cycles for 35 days. The experimental treatments included a light gradient consisting of three levels of tDOM addition (i.e., low tDOM, medium tDOM, and high tDOM) and a control without tDOM addition. Results showed that tDOM addition reduced the light availability by 27% (low tDOM addition), 62% (medium tDOM addition) and 86% (high tDOM addition). Light reduction through tDOM addition negatively influenced phytoplankton biomass during the first half of the experiment (

[Display omitted] • Diatom DNA metabarcoding was implemented in the Joint Danube Survey in 2019. • Communities analysed by different methods share common taxa but contain discrepancies. • IPS obtained by different methods correlate but affected by community discrepancies. • Metabarcoding should be used along morphology-based methods in future campaigns. The Joint Danube Survey (JDS) is a regular transnational survey to monitor the quality of the Danube and its main tributaries, in accordance with the EU Water Framework Directive. During the JDS4 in 2019, conventional methods to monitor selected biological quality elements were complemented with DNA metabarcoding. All together 72 phytobenthos samples were collected along the Danube and its major tributaries within the JDS4, using light microscopy and DNA metabarcoding amplifying a fragment of the rbc L marker gene. The (i) applicability of DNA metabarcoding to identify diatom communities compared to microscopy; (ii) diversity metrics between DNA metabarcoding and microscopy analysis and (iii) the usability of DNA metabarcoding for routine monitoring and assessment of the Danube under future JDS surveys were investigated. Diatom communities resulting from light microscopy and DNA metabarcoding assessments share 26.5% of all taxa which corresponds to 64.3% when considering relative abundances. Discrepancies originate from biases both from metabarcoding, e.g. missing taxa from the reference library, and from microscopy, e.g. overlooking of hardly visible taxa. Microscopy detected more taxa in total but metabarcoding revealed a higher alpha diversity, detecting also very rare taxa in a given sample. Molecular and microscopy based Specific Pollution Sensitivity Index (IPS) values correlated significantly but differences were detected at several sites due to the differences in community composition and the overestimation of large taxa by metabarcoding. Although both methods showed a decreasing trend of IPS along the Danube, the metabarcoding based IPS covered a higher range of quality classes indicating lower values for downstream sites and the tributaries. We suggest that metabarcoding provides a standardisable and efficient tool in biomonitoring, being more distinctive among quality classes than microscopy. Due to the high sequencing depth, it is able to detect a higher diversity on genetic level in a time- and cost-efficient manner that should be implemented in future quality assessment tools. We recommend its use in future biomonitoring surveys, for now, as a complementary method to conventional ones. [ABSTRACT FROM AUTHOR]

Data about 8 taxa of phytobenthos, firstly recorded for «Mys Martyan» Nature Reserve, are presented: in the supralittoral zone – Planktolyngbya contorta (first record for Crimean Coast and North Black Sea coastal area); in the pseudolittoral and sublittoral zone – Polysiphonia breviarticulata; in the sublittoral zone – Spongomorpha aeruginosa (first record for the hydrobotanical area «Southern Coast of Crimea»), Myriactula rivulariae, Myrionema seriatum, Polysiphonia arenaria, P. subulata, Titanoderma pustulatum (first record for the hydrobotanical area «Southern Coast of Crimea»). Thus, currently 144 species of macrophytes and 67 species of cyanobacteria are listed here. The research was conducted on a stationary monitoring site of «Mys Martyan» Nature Reserve during the spring-summer period of 2017. The obtained results expand the idea of natural phytodiversity of the protected object, the hydrobotanical area and the whole region.

The green alga Micrasterias arcuata is commonly found in the periphyton of slightly acidic ponds and wet grasslands of central Brazil. We used M. arcuata complex as a model system for evaluation of the following questions: (a) Is there any relation between morphological characteristics of M. arcuata populations and ecological features of the sites? (b) Can the observed plasticity be explained by an allometric scaling relationship leading to differential distribution of the morphotypes among different habitats (ponds and wet grasslands)? (c) Is there any surface-to-volume ratio (S:V) scaling that can be explained as adaptive response to ecological characteristics of sites? A total of 50 individual semicells of M. arcuata were photographed from ten natural populations, yielding a 500 objects dataset. Individuals from ponds were morphologically different from the ones in the wet grasslands, presenting bigger cells, but also with higher S:V. The eventual surface loss usually associated to bigger sizes was compensated by more elaborated cells, yielding positive allometry of the S:V ratio scaling. Our data support the idea that such differences in cell morphology are an adaptation to environmental conditions, especially desiccation stress favoring cells with lower S:V and higher isoperimetric quotient in the wet grasslands. [ABSTRACT FROM AUTHOR]

Aim: Understanding and quantifying the seasonal patterns in biodiversity of phytobenthos, macro‐zoobenthos and fishes in Mediterranean coastal lagoons, and the species dependence upon environmental factors. Location: The study was carried out in the "Stagnone di Marsala e Saline di Trapani e Paceco," the largest coastal lagoon system in the central Mediterranean Sea (Sicily, Italy), a Special Protection Area located along one of the central ecological corridors joining Africa and Europe. Methods: The coastal lagoon system was selected as a model ecosystem to investigate the seasonal variations in biodiversity indices and dominance–diversity relationships in phytobenthos, macro‐zoobenthos and fishes, and how seasonal variations in temperature, salinity, depth, inorganic and organic suspended matter affect the abundance of the species constituting these communities. Models of ecosystem structure, describing the interactions among functional groups and environmental variables, were also developed using confirmatory path analysis and artificial neural networks to exemplify their application in predicting temperature‐driven alterations. Results: Wide seasonal variations in biodiversity indices and dominance–diversity relationships across the communities of the coastal lagoon system were observed, driven by the dynamics in climate and resource availability. The effects of the environmental variables on taxon abundances varied in relation to the community, with the widest responses elicited in phytobenthos and fishes. Temperature was the main variable affecting taxon abundances in macro‐zoobenthos and was also the major driver of shallow water ecosystem structure. Main conclusions: This research shed light on the seasonal variations in biodiversity of Mediterranean coastal lagoons, elucidating also the tight dependence of phytobenthos, macro‐zoobenthos and fish diversity upon environmental factors. The findings and the methodological approach proposed may be crucial in developing models able to predict future climate‐driven alterations in communities inhabiting these important and threatened ecosystems. [ABSTRACT FROM AUTHOR]

To test if phytobenthic algae provide additional important information to macrophytes and phytoplankton for lake monitoring, we sampled two large lakes in Norway. In each lake, we analyzed water chemistry and phytoplankton above the deepest site, recorded macrophytes and non-diatom phytobenthic algae at 20 sites around the shoreline and estimated site-specific nutrient input from land cover. Since no ready-to-use phytobenthos index exists for lakes in Norway, we tested the PIT index developed for rivers, commonly perceived signs of disturbance such as high algal cover, and taxon richness as well as similarity patterns. Both lakes were nutrient poor, but had potential local nutrient inputs (villages, agriculture). In neither of the lakes did phytobenthos indicate a worse overall ecological status than macrophytes and phytoplankton. Our data therefore, did not suggest that it would be useful to add phytobenthos into surveillance monitoring of lakes in Norway. There was a loose correlation between macrophyte and phytobenthic site-specific taxon richness and similarities. This means that macrophytes and phytobenthos do indeed give partly redundant information. High algal cover was found at sites with both high and low phosphorus input. Using algal cover as indicator of site-specific nutrient input is therefore overly simplistic. Urban and cultivated areas were associated with a more eutrophic PIT. This indicates that the PIT, despite being developed for lotic waters, may be used to detect site specific nutrient input in lakes. [ABSTRACT FROM AUTHOR]

Background - The microscopic world of the freshwater biofilm is a complex association of organisms from prokaryotes to metazoans. Understanding the relationships between these organisms, and between them and their environment, is complicated by the processes by which biofilms are studied. Whilst it is possible to observe and minutely describe the individual organisms which comprise biofilms, interrelationships within the 'community' are often destroyed during sample collection and investigation under the microscope. Ecologists often focus on particular groups of organisms (e.g. diatoms) and interrogate data using multivariate statistics. This offers valuable insights that enable us to understand how associations of particular taxonomic groups respond to key environmental gradients yet offers an essentially abstract view of the microscopic world. Approach - In this essay we contrast the great detail achieved when we see and describe individual cells with the gross approximations necessary when the response of communities is considered. A focus on the diatom assemblage (one part of the intricate biofilm community) and the use of multivariate statistics to interpret responses along ecological gradients offers opportunities to understand environmental change in space and time but at the expense, perhaps, of local detail which may account for some of the unexplained variation in models. We cannot envisage a change in approach in the near future but, instead, encourage a greater awareness of the complexity of stream biofilms to better inform interpretation. [ABSTRACT FROM AUTHOR]

The availability of quantitative long term datasets on the phytobenthic assemblages of the Mar Piccolo of Taranto (southern Italy, Mediterranean Sea), a lagoon like semi-enclosed coastal basin included in the Italian LTER network, enabled careful analysis of changes occurring in the structure of the community over about thirty years. The total number of taxa differed over the years. Thirteen non-indigenous species in total were found, their number varied over the years, reaching its highest value in 2017. The dominant taxa differed over the years. The number of species in each taxonomic division also varied. In addition to the centuries-old exploitation of its biotic resources, mainly molluscs, the basin has been subject for a long time to a range of anthropogenic driving forces linked to urbanisation, shipbuilding, agriculture and military activities, which have caused chemical and biological pollution, eutrophication and habitat destruction. It may therefore be assumed that these changes were closely related to human activities. Indeed, it was observed that the reduction of only one of these forces, i.e. urban sewage discharge, triggered the recovery of phytobenthos. Therefore, it may be assumed that if the anthropogenic pressure on the Mar Piccolo was eased, it could once again become the paradisiacal place it was held to be in ancient times. [ABSTRACT FROM AUTHOR]

Establishing ecological assessment schemes is challenging when gradients are short and there are no sites with minimal anthropogenic alteration against which metrics can be calibrated. This is the situation for large rivers in Romania and this paper describes efforts to establish meaningful ecological status concepts. The intercalibration exercise, conducted as part of Water Framework Directive (WFD) implementation, has provided a metric ("phytobenthos Intercalibration Common Metric", pICM) which allows ecological status in different countries to be expressed on a common scale. The average boundary positions of countries who participated in this exercise provided a "common view" of status and, together with pICM, offer an "off-the-shelf" solution for countries unable to develop independent methods. However, even when expressed as pICM, Romanian phytobenthos data have a weak relationship with nutrients. Analysis of chemical data and comparison with similar data from elsewhere in Europe confirm that there are few sites with significantly elevated nutrient concentrations. Incorporation of the Romanian data into the larger dataset produced a stronger relationship from which the status of phytobenthos in very large rivers in Romania could be confirmed. This paper shows how the consensus that emerged from the WFD intercalibration exercise supports those countries unable to participate in the initial exercises. [ABSTRACT FROM AUTHOR]

Climate change threatens surface waters worldwide, especially shallow lakes where one of the expected consequences is a sharp increase in their water temperatures. Phytobenthos is an essential, but still less studied component of aquatic ecosystems, and it would be important to learn more about how global warming will affect this community in shallow lakes. In this research, the effects of different climate change scenarios (SSP2-4.5 and SSP5-8.5, as intermediate and high emission scenarios) on the structure and function of the entire phytobenthos community using species- and trait-based approaches were experimentally investigated in an outdoor mesocosm system. Our results show that the forecasted 3 °C increase in temperature will already exert significant impacts on the benthic algal community by (1) altering its species and (2) trait composition (smaller cell size, lower abundance of colonial and higher of filamentous forms); (3) decreasing Shannon diversity; and (4) enhancing the variability of the community. Higher increase in the temperature (+5 °C) will imply more drastic alterations in freshwater phytobenthos by (1) inducing very high variability in species composition and compositional changes even in phylum level (towards higher abundance of Cyanobacteria and Chlorophyta at the expense of Bacillariophyta); (2) continuing shift in trait composition (benefits for smaller cell volume, filamentous life-forms, non-motile and weakly attached taxa); (3) further reducing the functional diversity; (4) increasing biofilm thickness (1.4 μm/°C) and (5) decreasing maximum quantum yield of photosystem II. In conclusion, already the intermediate emission scenario will predictably induce high risk in biodiversity issues, the high emission scenario will imply drastic impacts on the benthic algae endangering even the function of the ecosystem. [Display omitted] • Climate change threatens shallow lakes, whose phytobenthos is still less studied. • Even a moderate warming (+3 °C) may cause decline in biodiversity of this community. • Worst-case scenario (+5 °C) may result also in loss in its functional properties. • Global warming may favour Cyanobacteria and Chlorophyta at the expense of diatoms. • Global warming may favour small, filamentous, non-motile, weakly attached taxa. [ABSTRACT FROM AUTHOR]

Photoautotrophic biofilms play a pivotal role in self-purification of rivers. We took advantage of the biofilm’s cleaning capacity by applying artificial stream mesocosms, called algae turf scrubberTM (ATS), to reduce the nutrient load of a highly eutrophicated backwater in Vienna (Austria). Since purification strongly depends on benthic algae on the ATS, we focused on the algae community composition and succession. Estimation of coverage, photographic documentation for micromapping, species identification and pigment analyses were carried out. Already one week after exposition, 20–30 different taxa were recorded, suggesting a rapid colonization of the substrate. In total around 200 taxa were identified, mainly belonging to Chlorophyta, Bacillariophyceae and Cyanoprokaryota. Nonmetric multidimensional scaling implied that season and succession strongly influenced species composition on the ATS and a minimum turnover of 0.28 indicates a development towards a more stable community at the end of experiments. We measured maximum biomass production of ~250 g m−2 in June and August and during a period of 5 months nearly 19 kg ha−1 phosphorus could be removed. ATS systems proved to retain nutrients and produce algae biomass in an environmentally friendly and cost effective way and thus support restoration of highly eutrophicated water bodies.

The Sasyk Reservoir is one of the largest seaside reservoirs in Ukraine, artificially maintained as a freshwater area including various floodplain areas. The Reservoir originated from an estuary to now being an almost freshwater reservoir. The diatoms (Bacillariophyta) in benthos were investigated for analyzing the coastal zone diversity of the Black Sea inside the borders of Ukraine. The indicated diatom composition was formed by 97 species (100 infraspecies taxa). Some rare marine and freshwater taxa were noted, as well as three species reported in Ukrainian territory for the first time (Navicula vandamii Schoeman et R.E.M. Archibald, Sellaphora difficillima (Hustedt) C.E. Wetzel, L. Ector et D.G. Mann, and Mastogloia laterostrata Hustedt). The bioindicative characteristics of the diatom composition testified to the freshwater condition of the reservoir. Changes to the salinity level of the Sasyk Reservoir were exposed due to the composition of benthic diatoms. The presence of mesohalobous species (7 taxa) acknowledges conditions that are typical for estuaries and mouths of rivers and reveals the salinity changes in the Sasyk Reservoir. Likewise, the prevailing number of oligohalobous diatoms (61 taxa) reveal presence of freshwater in the reservoir. The implementation of the Polish phytobenthos lake assessment method for the nearby Ukrainian Reservoir was conducted for the first time. The multimetric Diatom Index for lake values varied from 0.39 to 0.76, and revealed alterations in the status over the Sasyk sites, ranging from good, moderate, to poor. Thus, it may be concluded that the current ecological status relating to the composition of benthic diatoms of the reservoir located in the coastal zone of the Black Sea is evaluated as having a moderate status class with some exceptions.

The aim of this work is to simulate the dissolved oxygen deficiency in the coastal zone that sometimes occurs during the summer water stagnation. We consider the main components of the marine ecosystem that play a major role in such processes—concentrations of nitrogen, phosphorus and sulfur compounds in water, dissolved and particular organic matter, oxygen, biomass of phytoplankton and macroalgae. We use the object-based modeling technique to simulate the spatio-temporal variability of the ecosystem in a 2D domain. In comparison with the traditional approach, it gives several advantages: more precise parametrizations of the biological components’ functionality; higher spatial resolution; possibility to account for the individual variability of hydrobionts; easy inclusion of an arbitrary number of species in the model. Our model included three species of phytoplankton and seven macroalgae. Individual-based modules control their functionality. Species of phytoplankton and seaweeds chosen for simulations are typical for the coastal zone of Crimea. In the simulations, we study the contribution of micro- and macroalgae to the processes of self-purification of a semi-enclosed basin in case of a sharp increase in nutrient concentration in water.

Substratum collected during diving surveys of sublittoral communities off the Greek island of Rhodes (Dodecanese, South-East Aegean) in late 2015 was incubated in the laboratory. Among the emerging macroalgal germlings, there was the second-ever record and isolate of the small benthic multicellular alga Schizocladia ischiensis of the poorly known monotypic Schizocladiophyceae, the sister group of the brown algae (Phaeophyceae). Its nuclear ribosomal small subunit, Rubisco spacer (rbcL, psaA, and psbC sequences (in total 5237 bp)) were similar to those of the only previous isolate of the species from Ischia, western Mediterranean. Our new strain formed branched upright thalli attached to the substratum by an amorphous substance secreted at the bottom of the basal cell. It is possible that S. ischiensis is a common member of the infralittoral and circalittoral communities in the Mediterranean and generally overlooked because of its minute size. Germling emergence appears to represent the method of choice to reveal benthic algae of this small size.

Wrażliwość okrzemek na presje antropogeniczne (np. eutrofizację lub zakwaszenie wód) skutkuje ich szerokim zastosowaniem w bioindykacji. W wielu krajach na świecie podjęto się opracowania lub stosowania opracowanych już indeksów biotycznych opartych na okrzemkach fitobentosowych, służących ocenie stanu wód. Od 2000 roku w krajach członkowskich Unii Europejskiej odbywa się to w ramach wdrażania Ramowej Dyrektywy Wodnej. Wyniki uzyskane przy użyciu polskiej metody oceny jezior na podstawie okrzemek epifitycznych (IOJ - Indeks Okrzemkowy Jezior), znacznie odbiegają od wyników jakie dają pozostałe metody oceny stanu ekologicznego. W niniejszym artykule podjęto się prześledzenia literatury naukowej dotyczącej fitobentosu w bioindykacji w celu zidentyfikowania silnych i słabych stron polskiej metody IOJ oraz wskazania potencjalnych kierunków udoskonalenia metody. Prześledzono literaturę dokumentującą zmienność fitobentosu związaną z jego siedliskiem, zmienność przestrzenną w skali jeziora oraz zmienność w sezonie wegetacyjnym. Przytoczone piśmiennictwo wskazuje na to, że doprecyzowanie wytycznych do procedury poboru prób oraz zwiększenie liczby stanowisk badawczych mogłoby zwiększyć funkcjonalność polskiej metody oceny jezior. Zasugerowano również, że warto podjąć się przetestowania wpływu zmienności sezonowej zespołu fitobentosu na jego wartość bioindykacyjną.

Aim. As a result of fluctuations in water level, waves, circulation, rise and fall of the water levels there are constant partial erosion and leaching of soil banks in water bodies, with intensive ongoing pollution of the waters of the Caspian Sea, which we have seen in recent decades, and in the long run may dangerously affect the transparency of the water and reduction of biomass of the benthic community in the western part of the South Caspian Sea. The paper presents the results of the last 60 years of monitoring studies to determine the nature of transparency, depth of the euphotic layer, the primary production of phytoplankton photosynthesis, phytoand zoobentos biomass and destruction of organic matter in the coastal western shelf of the South Caspian. Methods. In the course of research, modern methods of quantitative and qualitative analysis were used, regulated by normative documents, duly approved for environmental monitoring of water bodies. Results. Studies have shown that since the second half of the 90’s, the mainland coast strip is strongly deformed, starting from the village of Shihva to Kura area, further from the south of the village of Narimanabada to Astara. Dozens of artificial coves, bays, islands were created with clay-soil mounds. Conclusions. A huge mass of clay and soil goes to the coastal waters of the western shelf as a result of the destruction of the structure of the coasts due to waves and wind, resulting in clastic particles in the water increased by 2.5 3 times, the transparency of the water in the area of 5-10 m depth contours is reduced by more than 2 fold, increasing the degradation 1.6 times. During this period, because of the intensity of sedimentation and the overall pollution in the study area, phytobenthos has almost disappeared and flowering has been reduced by 7580%. Zoobenthos has been badly damaged and biomass of bento detritivorous organisms has also been reduced.

Development of effective metabarcoding-based tools for ecological assessment requires more than just detailed knowledge of ecology and molecular genetics. There is also a need to understand the context within which they will be used, and for the organisation that uses it to understand the techniques involved and, more especially, how the data that are produced differs from that generated by traditional ecological methods. Lessons learnt during the development of a metabarcoding tool for phytobenthos in the UK are set out in this paper. This attempted to develop a molecular "mirror" of the existing light microscopy-based approach to ecological assessment. Although this conservative approach does not exploit the full potential of metabarcoding data, it does mean that benchmarks exist against which performance and data can be judged. However, the pace of developments within molecular ecology means that regulators will need to find ways of incorporating new scientific insights whilst, at the same time, ensuring a stable regulatory regime. Installation of a metabarcoding technique within a regulatory organisation, in other words, is more than a transaction in which one approach is switched for another. A deeper transformation of the organisation is required. [ABSTRACT FROM AUTHOR]

Two methods of quantifying diatoms were compared: (i) by counting valves, and (ii) by simple assignment of individual species to a seven-point scale according to their coverage on a glass slide. The saprobity-trophic index introduced in the Czech Republic for assessing the ecological status of running waters in accordance with the requirements of the Water Framework Directive (WFD) was used for comparison. There were no statistically significant differences between the indices as calculated by the studied methods, and therefore the comparable indicative values of the two approaches were demonstrated. In all cases, however, indices based on coverage classes achieved higher correlation with the fundamental water chemistry parameters than did indices based on diatom valve counts. To explain the cause of higher correlations, different variants of editing input data were used. The results support the assumption that the main cause of the poorer predictive value for the index based on diatom valve counts is that the abundant taxa are attributed too much importance in the final assessment of the environment quality. Using degrees of coverage for the quantification of diatoms in evaluating the ecological status thus appears to be preferable (or at least sufficient) for the given purpose. [ABSTRACT FROM AUTHOR]

The aim of the present study was to evaluate the influence of different human activities on water quality and benthos composition in the Ošetnice Stream that is located in the Western Carpathian Mountains. During the whole period of our monitoring, the high concentrations of dissolved oxygen and low content of organic matters were determined. Upstream part of the Ošetnice Stream is affected by long term building activities concerning railway tunnels and by the motorway along the stream that is in winter chemically treated to assure negotiability. Ski area situated close to the stream was used 110 days during the monitored period. Average daily visit was 590 persons. In winter, when road salting was used, concentrations of chlorides, sodium and calcium were noticeably increased in the stream tributaries which had an impact on monitored water parameters. Water quality assessment using macrozoobenthos and phytobenthos indices revealed the environmental state in a range from moderate to good. Decrease of salmonid community in the stream corresponds to start of road use in the year 2002. Salt applied in winter period to ensure road negotiability affected significantly water chemistry of the monitored stream. Deterioration of environmental conditions is mainly due to human activities; nevertheless self-cleaning ability of the stream is high and ensure a fast degradation of pollutants. Thus the biotic communities (except fish) of the Ošetnice Stream have to adapt to changes of the environment within the year.

Recent results of field studies on the exposed coast of Lithuania were used to model the area occupied by the red alga Furcellaria lumbricalis using the Natural Neighbor interpolation technique, while linear regression was applied to estimate the species' standing stock. The area covered by F. lumbricalis extended for 26 km along the coast between depths of 1 and 15 m. The maximum species cover in the study area ranged between 4 and 10 m depth, which is one of the widest in the Baltic Sea. The modelled area of F. lumbricalis covered 35 ± 11 km2 with a total biomass of 7554 ± 3813 t.