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Neoantigens play important roles in cancer immunotherapy. Current methods used for neoantigen prediction focus on the binding between human leukocyte antigens (HLAs) and peptides, which is insufficient for high-confidence neoantigen prediction. In this study, we apply deep learning techniques to predict neoantigens considering both the possibility of HLA-peptide binding (binding model) and the potential immunogenicity (immunogenicity model) of the peptide-HLA complex (pHLA). The binding model achieves comparable performance with other well-acknowledged tools on the latest Immune Epitope Database (IEDB) benchmark datasets and an independent mass spectrometry (MS) dataset. The immunogenicity model could significantly improve the prediction precision of neoantigens. The further application of our method to the mutations with pre-existing T-cell responses indicating its feasibility in clinical application. DeepHLApan is freely available at https://github.com/jiujiezz/deephlapan and http://biopharm.zju.edu.cn/deephlapan., (Copyright © 2019 Wu, Wang, Zhang, Zhou, Zhao, Su, Gu, Wu, Zhou and Chen.)

Automation is increasingly at the forefront of transportation research, with the potential to bring fully autonomous vehicles to our roads in the coming years. This comprehensive survey provides a holistic look at the essential components and cutting-edge technologies that are driving the development and implementation of autonomous driving. It starts by evaluating two critical system architectures that are fundamental to the operation of autonomous vehicles: the layered and end-to-end structures. It then examines the critical areas of scene perception and localization, emphasizing the importance of sensor technologies. These technologies are vital for tasks such as object detection and semantic segmentation, which allow vehicles to understand and navigate their environment. A special focus is given to the complex topic of object detection, along with suggestions for how it can be enhanced. The survey then proceeds to provide detailed discussions on path planning, trajectory prediction, and decision-making processes. These elements are crucial for the smooth navigation of autonomous vehicles, and the survey highlights the role of artificial intelligence (AI) and machine learning in these processes. Overall, the survey presents the rapid progress in the field of autonomous driving, offering a comprehensive assessment of the technologies and innovations that are essential for moving toward a safe and efficient autonomous future. [ABSTRACT FROM AUTHOR]

Self-supervised visual representation learning focuses on capturing comprehensive features via exploiting the unlabeled datasets. However, existing contrastive learning based SSL frameworks are subjected to higher computational consumption and unsatisfactory performance. To handle these issues, we present a novel single-branch SSL method that incorporates an adaptive feature selection and activation module and a progressive cascade dimensionality reduction module, called APNet. Specifically, our method first fully exploits the unlabeled datasets and extracts intra- and inter-image information via introducing montage image. In addition, a novel adaptive feature selection and activation module is designed to generate the most comprehensive features. Besides, a progressive cascade dimensionality reduction module is proposed to capture the most representative features from latent vectors through cascade dimensionality increasing–decreasing operations. Extensive experiments have demonstrated the robustness and effectiveness of APNet. Specifically, APNet exceeds MoCo-v3 by 3.1% on the ImageNet-100 dataset, and consumes only half of the calculation. Code is available at https://github.com/AI-TYQ/APNet. • We embed feature selection and dimensionality reduction modules into SSL framework. • We design an attention module that selects and activates representative features. • We introduce a dimensionality reduction module to retain discriminative features. • We demonstrate the advantages of the above contributions through experiments. [Display omitted] [ABSTRACT FROM AUTHOR]