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Genomic selection (GS) is an option for plant domestication that offers high efficiency in improving genetics. However, GS is often not feasible for long-lived tree species with large and complex genomes. In this paper, we investigated UAV multispectral imagery in time series to evaluate genetic variation in tree growth and developed a new predictive approach that is independent of sequencing or pedigrees based on multispectral imagery plus vegetation indices (VIs) for slash pine. Results show that temporal factors have a strong influence on the h2 of tree growth traits. High genetic correlations were found in most months, and genetic gain also showed a slight influence on the time series. Using a consistent ranking of family breeding values, optimal slash pine families were selected, obtaining a promising and reliable predictive ability based on multispectral+VIs (MV) alone or on the combination of pedigree and MV. The highest predictive value, ranging from 0.52 to 0.56, was found in July. The methods described in this paper provide new approaches for phenotypic selection (PS) using high-throughput multispectral unmanned aerial vehicle (UAV) technology, which could potentially be used to reduce the generation time for conifer species and increase the genetic granularity independent of sequencing or pedigrees. [ABSTRACT FROM AUTHOR]

The past 15 y has seen much development in documentation of domestication of plants and animals as gradual traditions spanning millennia. There has also been considerable momentum in understanding the dispersals of major domesticated taxa across continents spanning thousands of miles. The two processes are often considered within different theoretical strains. What is missing from our repertoire of explanations is a conceptual bridge between the protracted process over millennia and the multiregional, globally dispersed nature of domestication. The evidence reviewed in this paper bears upon how we conceptualize domestication as an episode or a process. By bringing together the topics of crop domestication and crop movement, those complex, protracted, and continuous outcomes come more clearly into view. [ABSTRACT FROM AUTHOR]

Wild rice (Zizania spp.), an aquatic grass belonging to the subfamily Gramineae, has a high economic value. Zizania provides food (such as grains and vegetables), a habitat for wild animals, and paper-making pulps, possesses certain medicinal values, and helps control water eutrophication. Zizania is an ideal resource for expanding and enriching a rice breeding gene bank to naturally preserve valuable characteristics lost during domestication. With the Z. latifolia and Z. palustris genomes completely sequenced, fundamental achievements have been made toward understanding the origin and domestication, as well as the genetic basis of important agronomic traits of this genus, substantially accelerating the domestication of this wild plant. The present review summarizes the research results on the edible history, economic value, domestication, breeding, omics research, and important genes of Z. latifolia and Z. palustris over the past decades. These findings broaden the collective understanding of Zizania domestication and breeding, furthering human domestication, improvement, and long-term sustainability of wild plant cultivation. [ABSTRACT FROM AUTHOR]

Domesticated opium poppy Papaver somniferum L. subsp. somniferum probably originated in the Western Mediterranean from its possible wild progenitor, Papaver somniferum L. subsp. setigerum and spread to other European regions. Seeds of opium poppy have been identified in different European regions since the Early Neolithic (from the 6th millennium cal. BC onwards) period. However, until recently, the absence of morphological identification criteria has prevented the discrimination between wild and domestic morphotypes. New morphometric approaches to distinguish modern subspecies have been proven to be applicable to waterlogged archaeological remains, opening the possibility of understanding the process of domestication of the plant in both time and space. This paper applies seed outline analyses, namely elliptic Fourier transforms, combined with size and number of cells to archaeological waterlogged Papaver seeds throughout the Neolithic period in the NW Mediterranean and the surroundings of the Alps. Furthermore, one example from the Late Bronze Age (LBA) was added to see what kind of differences appeared during the >1000 years between the end of the Neolithic and the LBA. The aim of the study is to classify the archaeological seeds as domestic or wild morphotypes and observe morphometric changes in connection to geographical and chronological patterns that can explain the spread and domestication process(es) of this important crop. A total of 295 archaeological seeds coming from 10 waterlogged sites dating between 5300–2300 cal. BC (Neolithic), and one LBA site dating to 1070 cal. BC were analysed. The results indicate the presence of seeds, similar to the wild morphotype, in the Mediterranean sites and larger seeds, similar to the domestic morphotype, in the regions surrounding the Alps. The number of cells mainly increased during the Late Neolithic (3300 to 2300 cal. BC) and, finally, in the Late Bronze Age (ca. 1050–800 cal. BC), larger, morphologically domesticated seeds are clearly predominant. A change in the shape of the seeds is only clearly visible in the LBA material. Altogether our results suggest that opium poppy seeds show no sign of domestication in the early periods of the Neolithic, despite the fact that the plant was very probably already cultivated at that time in the western Mediterranean region. [ABSTRACT FROM AUTHOR]

This paper reviews changes to lifecycle temporality in Southwest Asian plant and animal domestication, exploring their relationship to long-term processes associated with ancient and contemporary globalization. We survey changes under domestication to the timing of seed dispersal, germination, vegetative growth, flowering and maturation in wheat and barley and to birth, reproduction, lactation, wool production and death in sheep, goats and cattle. Changes in biological temporality among domesticates are ultimately related to globally increasing production intensity, geographic diffusion, and agricultural diversity associated with cultivar/breed evolution. Recently, however, increasing crop production intensity and geographic diffusion are accompanied by declining agricultural diversity worldwide. Similar processes are apparent in contemporary economic and cultural globalization, suggesting that long-term agricultural developments might be viewed as a subset of globalization. Moreover, the origin of certain features of contemporary globalization may be traced back to the beginnings of plant and animal domestication. Thus, while biologists since Darwin considered domestication as a model for the study of evolution, we suggest that domestication may also offer a model for the study of globalization. [ABSTRACT FROM AUTHOR]

Background: The cereal family Poaceae is one of the largest and most diverse angiosperm families. The central component of centromere specification and function is the centromere-specific histone H3 (CENH3). Some cereal species (maize, rice) have one copy of the gene encoding this protein, while some (wheat, barley, rye) have two. We applied a homology-based approach to sequenced cereal genomes, in order to finally trace the mutual evolution of the structure of the CENH3 genes and the nearby regions in various tribes. Results: We have established that the syntenic group or the CENH3 locus with the CENH3 gene and the boundaries defined by the CDPK2 and bZIP genes first appeared around 50 Mya in a common ancestor of the subfamilies Bambusoideae, Oryzoideae and Pooideae. This locus came to Pooideae with one copy of CENH3 in the most ancient tribes Nardeae and Meliceae. The βCENH3 gene as a part of the locus appeared in the tribes Stipeae and Brachypodieae around 35–40 Mya. The duplication was accompanied by changes in the exon-intron structure. Purifying selection acts mostly on αCENH3s, while βCENH3s form more heterogeneous structures, in which clade-specific amino acid motifs are present. In barley species, the βCENH3 gene assumed an inverted orientation relative to αCENH3 and the CDPK2 gene was substituted with LHCB-l. As the evolution and domestication of plant species went on, the locus was growing in size due to an increasing distance between αCENH3 and βCENH3 because of a massive insertion of the main LTR-containing retrotransposon superfamilies, gypsy and copia, without any evolutionary preference on either of them. A comparison of the molecular structure of the locus in the A, B and D subgenomes of the hexaploid wheat T. aestivum showed that invasion by mobile elements and concomitant rearrangements took place in an independent way even in evolutionarily close species. Conclusions: The CENH3 duplication in cereals was accompanied by changes in the exon-intron structure of the βCENH3 paralog. The observed general tendency towards the expansion of the CENH3 locus reveals an amazing diversity of ways in which different species implement the scenario described in this paper. [ABSTRACT FROM AUTHOR]

Livestock dung is a suitable material for delineating the complexity of interactions between people, plants and animals as it contains critical information on environmental and ecological issues as well as socio-economic dynamics and cultural lifeways. However, animal faecal remains and other coprogenic materials are commonly overlooked in most archaeological research programs due, in part, to methodological challenges in its recovery and identification. This paper evaluates the contribution of integrated geoarchaeological approaches, together with comparative reference ethnoarchaeological records, to interdisciplinary microscopic analyses on the identification of animal dung and its archaeological significance within farming built environments. It brings together records from a selection of recent geo-ethnoarchaeological case studies across the Near East, one of the heartlands of plant and animal domestication, and from northern Africa, an understudied key area with critical implications for neighbouring regions such as the Sahara. This article examines the state-of-the-art of dung material identifications within agricultural and pastoral settlements and their potential for tracing ecological diversity, animal management strategies, penning, grazing and foddering, seasonality, and dung use. This review highlights the value of modern reference frameworks of livestock dung as a primary source of information for disentangling human–plant–animal dynamics through time and space. [ABSTRACT FROM AUTHOR]

Copyright of Scientia Agropecuaria is the property of Scientia Agropecuaria and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

When plant-available phosphorus (P) is lost from a soil solution, it often accumulates in the soil as a pool of unavailable legacy P. To acquire legacy P, plants employ recovery strategies, such as forming associations with soil microbes. However, the degree to which plants rely on microbial associations for this purpose varies with crop domestication and subsequent breeding. Here, by generating microbial co-occurrence networks, we sought to explore rhizosphere bacterial interactions in low-P conditions and how they change with tomato domestication and breeding. We grew wild tomato, traditional tomato (developed circa 1900), and modern tomato (developed circa 2020) in high-P and low-P soil throughout their vegetative developmental stage. Co-occurrence network analysis revealed that as the tomatoes progressed along the stages of domestication, the rhizosphere microbiome increased in complexity in a P deficit. However, with the addition of P fertilizer, the wild tomato group became more complex, surpassing the complexity of traditional and modern tomato, suggesting a high degree of responsiveness in the rhizosphere microbiome to P fertilizer by wild tomato relatives. By illustrating these changing patterns of network complexity in the tomato rhizosphere microbiome, we can further understand how plant domestication and breeding have shaped plant–microbe interactions. [ABSTRACT FROM AUTHOR]

Summary: Thlaspi arvense (pennycress) has the potential for domestication as a new oilseed crop. Information from an extensive body of research on the related plant species Arabidopsis can be used to greatly speed this process. Genome‐scale comparisons in this paper documented that pennycress and Arabidopsis share similar gene duplication. This finding led to the hypothesis that it should be possible to isolate Arabidopsis‐like mutants in pennycress. This proved to be true, as forward genetic screens identified floral and vegetative pennycress mutants that were similar to mutants found in Arabidopsis. Extending this approach, it was shown that most of the pennycress genes responsible for the formation of oxidized tannins could be rapidly identified. The causative mutations in the pennycress mutants could be identified either by PCR amplification of candidate genes or through whole‐genome sequencing (WGS) analysis. In all, WGS was used to characterize 95 ethyl methane sulfonate mutants, which revealed a mutation rate of 4.09 mutations per megabase. A sufficient number of non‐synonymous mutations were identified to create a mutant gene index that could be used for reverse genetic approaches to identify pennycress mutants of interest. As proof of concept, a Ta‐max3‐like dwarf mutant and Ta‐kcs5/cer60‐like wax mutants deficient in the biosynthesis of long chain fatty acids were identified. Overall, these studies demonstrate that translational genomics can be used to promote the domestication of pennycress. Furthermore, the ease with which important findings could be made in pennycress makes this species a new potential model plant. Significance statement: The domestication of pennycress has the potential to create a new oilseed cash/cover crop that can be grown during the fallow period between traditional summer crops, such as between the >80 million acres undergoing corn/soybean rotation in the Upper Midwest of the USA. This report demonstrates that translational genomics using Arabidopsis can serve as a tool to help greatly speed up the domestication process. [ABSTRACT FROM AUTHOR]

Southwestern Amazonia is considered an early centre of plant domestication in the New World, but most of the evidence for this hypothesis comes from genetic data since systematic archaeological fieldwork in the area is recent. This paper provides first-hand archaeobotanical evidence of food production from early and middle Holocene (ca. 9,000–5000 cal. BP) deposits at Teotonio, an open-air site located on a 40 m-high bluff on the south bank of the Madeira river. Such evidence includes the presence of local and exotic domesticates such as manioc (Manihot esculenta), squash (Cucurbita sp.) and beans (Phaseolus sp.), alongside edible fruits such as pequiá (Caryocar sp.) and guava (Psidium sp.) that point to the beginnings of landscape domestication. The results contribute to an ever-growing number of studies that posit southwest Amazonia as an important centre for early crop domestication and experimentation, and which highlight the longue-durée of human impacts on tropical forest biodiversity around the world. [ABSTRACT FROM AUTHOR]

Domestication has been influenced by formal plant breeding since the onset of intensive agriculture and the Green Revolution. Despite providing food security for some regions, intensive agriculture has had substantial detrimental consequences for the environment and does not fulfill smallholder's needs under most developing countries conditions. Therefore, it is necessary to look for alternative plant production techniques, effective for each environmental, socio-cultural, and economic conditions. This is particularly relevant for countries that are megadiverse and major centers of plant domestication and diversification. In this white paper, a Mexico-centered initiative is proposed, with two main objectives: (1) to study, understand, conserve, and sustainably use the genetic diversity of domesticated plants and their wild relatives, as well as the ongoing evolutionary processes that generate and maintain it; and (2) to strengthen food and forestry production in a socially fair and environmentally friendly way. To fulfill these objectives, the initiative focuses on the source of variability available for domestication (genetic diversity and functional genomics), the context in which domestication acts (breeding and production) and one of its main challenges (environmental change). Research on these components can be framed to target and connect both the theoretical understanding of the evolutionary processes, the practical aspects of conservation, and food and forestry production. The target, main challenges, problems to be faced and key research questions are presented for each component, followed by a roadmap for the consolidation of this proposal as a national initiative. [ABSTRACT FROM AUTHOR]

Copyright of Revista del Museo de Antropología is the property of Museo de Antropologia - IDACOR and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The emergence of sedentism and agriculture in Amazonia continues to sit uncomfortably within accounts of South American pre-Columbian history. This is partially because deep-seated models were formulated when only ceramic evidence was known, partly because newer data continue to defy simple explanations, and partially because many discussions continue to ignore evidence of pre-Columbian anthropogenic landscape transformations. This paper presents the results of recent geoarchaeological research on Amazonian anthropogenic soils. It advances the argument that properties of two different types of soils, terras pretas and terras mulatas, support their interpretation as correlates of, respectively, past settlement areas and fields where spatially-intensive, organic amendment-reliant cultivation took place. This assessment identifies anthropogenic soil formation as a hallmark of the Amazonian Formative and prompts questions about when similar forms of enrichment first appear in the Amazon basin. The paper reviews evidence for embryonic anthrosol formation to highlight its significance for understanding the domestication of a key Amazonian crop: manioc (Manihot esculenta ssp. esculenta). A model for manioc domestication that incorporates anthropogenic soils outlines some scenarios which link the distribution of its two broader varieties-sweet and bitter manioc-with the widespread appearance of Amazonian anthropogenic dark earths during the first millennium AD. [ABSTRACT FROM AUTHOR]

Celiac disease, an autoimmune disorder triggered by consumption of the gluten protein, is theorized to have originated alongside the domestication of wheat during the European Agricultural Revolution, ca. 8 000 BCE (Freeman 2013). Human conditions that primarily affect soft tissue, like celiac disease, do not leave tangible evidence on the skeleton and therefore it is difficult to prove their presence. However, recent analyses have employed a suite of macroscopic, molecular, and chemical techniques to establish that a Roman Imperial (100-300 CE) individual from Cosa, Italy, likely suffered from celiac disease. This paper analyzes the works of these researchers and argues that this case study exemplifies modern bioarchaeology, which frequently requires an arsenal of methods beyond visual observation. Using similar syntheses of techniques bioarchaeologists can possibly identify celiac disease in individuals predating 100 CE, recreating the origins of celiac disease as well as tackling other previously 'impossible' research questions in this field. [ABSTRACT FROM AUTHOR]

This paper explores the relationship of weeds and crop parasites in the domestication of crop-plants within the Old World, drawing predominately on China and the Near East. This relationship is explored using the concept of niche construction in which the act of cultivation sets about chains of feedback in which the ecological worlds of plants and humans became increasingly intertwined resulting in ever increasing spheres of interdependence. Into this domestication entanglement a number of peripheral organisms (termed parasitic domesticoids) were drawn, from the weeds which came to inhabit arable fields, to the insect pests and rodents that came to settle in the grain stores of the first farmers. The evolution and spread of these organisms is then outlined against that of the crop itself. [ABSTRACT FROM AUTHOR]

The widely accepted view that eastern North America was a separate center of plant domestication bas resulted in an increasingly isolationist perspective on the region's culture history and a neglect of research on the diffusion into it of tropical cultigens. New data on archaeobotanical macromorphologies, the chemical and chromosomal composition of arcbaeobotanical specimens, and the geographical distribution of archaeobotanical remains challenge old paradigms. In particular, the diffusion of tropical cultigens across the Caribbean must now be seriously considered. This paper reports on current research suggesting alternatives to existing paradigms in relation to four plants (maize, tobacco, beans, and chenopods) and stresses prehistoric eastern North America's relationship to, instead of isolation from, Mesoamerica and South America. [ABSTRACT FROM AUTHOR]

Tea has historically been one of the most popular beverages, and it is currently an economically significant crop cultivated in over 50 countries. The Northwestern Caucasus is one of the northernmost regions for industrial tea cultivation worldwide. The domestication of the tea plant in this region took approximately 150 years, during which plantations spreading from the Ozurgeti region in northern Georgia to the southern city of Maykop in Russia. Consequently, tea plantations in the Northern Caucasus can serve as a source of unique genotypes with exceptional cold tolerance. Tea plants are known to be recalcitrant to Agrobacterium-mediated transfection. Research into optimal transfection and regeneration methodologies, as well as the identification of tea varieties with enhanced transformation efficiency, is an advanced strategy for improving tea plant culture. The aim of this study was to search for the optimal Agrobacterium tumefaciens-mediated transfection protocol for the Kolkhida tea variety. As a result of optimizing the transfection medium with potassium phosphate buffer at the stages of pre-inoculation, inoculation and co-cultivation, the restoration of normal morphology and improvement in the attachment of Agrobacterium cells to the surface of tea explants were observed by scanning electron microscopy. And an effective method of high-efficiency Agrobacteria tumefaciens-mediated transfection of the best local tea cultivar, Kolkhida, was demonstrated for the first time. [ABSTRACT FROM AUTHOR]

Cultivated soybean has undergone many transformations during domestication. In this paper we report a comprehensive assessment of the evolution of gene co-expression networks based on the analysis of 40 transcriptomes from developing soybean seeds in cultivated and wild soybean accessions. We identified 2680 genes that are differentially expressed during seed maturation and established two cultivar-specific gene co-expression networks. Through analysis of the two networks and integration with quantitative trait locus data we identified two potential key drivers for seed trait formation, GA20 OX and NFYA. GA20 OX encodes an enzyme in a rate-limiting step of gibberellin biosynthesis, and NFYA encodes a transcription factor. Overexpression of GA20 OX and NFYA enhanced seed size/weight and oil content, respectively, in seeds of transgenic plants. The two genes showed significantly higher expression in cultivated than in wild soybean, and the increases in expression were associated with genetic variations in the promoter region of each gene. Moreover, the expression of GA20 OX and NFYA in seeds of soybean accessions correlated with seed weight and oil content, respectively. Our study reveals transcriptional adaptation during soybean domestication and may identify a mechanism of selection by expression for seed trait formation, providing strategies for future breeding practice. [ABSTRACT FROM AUTHOR]

Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan) and south (Qujialing and Shijiahe) between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds), from systematic flotation of 123 samples (1700 litres), producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa) between 6300–6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato). In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum). Soybean appears on the site in the Shijiahe period (ca.2500 BC) and wheat (Triticum cf. aestivum) in the Late Longshan levels (2200–1800 BC). Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north. [ABSTRACT FROM AUTHOR]

The S-adenosyl-L-methionine-dependent methyltransferase superfamily plays important roles in plant development. The buds of Lonicera japonica are used as Chinese medical material and foods; chinese people began domesticating L. japonica thousands of years ago. Compared to the wild species, L. japonica var. chinensis, L. japonica gives a higher yield of buds, a fact closely related to positive selection over the long cultivation period of the species. Genome duplications, which are always detected in the domestic species, are the source of the multifaceted roles of the functional gene. In this paper, we investigated the evolution of the SAMe genes in L. japonica and L. japonica var. chinensis and further analyzed the roles of the duplicated genes among special groups. The SAMe protein sequences were subdivided into three clusters and several subgroups. The difference in transcriptional levels of the duplicated genes showed that seven SAMe genes could be related to the differences between the wild and the domesticated varieties. The sequence diversity of seven SAMe genes was also analyzed, and the results showed that different gene expression levels between the varieties could not be related to amino acid variation. The transcriptional level of duplicated PEAMT could be regulated through the SAM-SAH cycle. [ABSTRACT FROM AUTHOR]

In a plant-microbe symbiosis, the host plant plays a key role in promoting the association of beneficial microbes and maintaining microbiome homeostasis through microbe-associated molecular patterns (MAMPs). The associated microbes provide an additional layer of protection for plant immunity and help in nutrient acquisition. Despite identical MAMPs in pathogens and commensals, the plant distinguishes between them and promotes the enrichment of beneficial ones while defending against the pathogens. The rhizosphere is a narrow zone of soil surrounding living plant roots. Hence, various biotic and abiotic factors are involved in shaping the rhizosphere microbiome responsible for pathogen suppression. Efforts have been devoted to modifying the composition and structure of the rhizosphere microbiome. Nevertheless, systemic manipulation of the rhizosphere microbiome has been challenging, and predicting the resultant microbiome structure after an introduced change is difficult. This is due to the involvement of various factors that determine microbiome assembly and result in an increased complexity of microbial networks. Thus, a comprehensive analysis of critical factors that influence microbiome assembly in the rhizosphere will enable scientists to design intervention techniques to reshape the rhizosphere microbiome structure and functions systematically. In this review, we give highlights on fundamental concepts in soil suppressiveness and concisely explore studies on how plants monitor microbiome assembly and homeostasis. We then emphasize key factors that govern pathogen-suppressive microbiome assembly. We discuss how pathogen infection enhances plant immunity by employing a cry-for-help strategy and examine how domestication wipes out defensive genes in plants experiencing domestication syndrome. Additionally, we provide insights into how nutrient availability and pH determine pathogen suppression in the rhizosphere. We finally highlight up-todate endeavors in rhizosphere microbiome manipulation to gain valuable insights into potential strategies by which microbiome structure could be reshaped to promote pathogen-suppressive soil development. [ABSTRACT FROM AUTHOR]

Copyright of Revista Espanola de Antropologia Americana is the property of Universidad Complutense de Madrid and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Ancient DNA (aDNA) recovered from archaeobotanical remains can provide key insights into many prominent archaeological research questions, including processes of domestication, past subsistence strategies, and human interactions with the environment. However, it is often difficult to isolate aDNA from ancient plant materials, and furthermore, such DNA extracts frequently contain inhibitory substances that preclude successful PCR amplification. In the age of high-throughput sequencing, this problem is even more significant because each additional endogenous aDNA molecule improves analytical resolution. Therefore, in this paper, we compare a variety of DNA extraction techniques on primarily desiccated archaeobotanical remains and identify which method consistently yields the greatest amount of purified DNA. In addition, we test five DNA polymerases to determine how well they replicate DNA extracted from non-charred ancient plant remains. Based upon the criteria of resistance to enzymatic inhibition, behavior in quantitative real-time PCR, replication fidelity, and compatibility with aDNA damage, we conclude these polymerases have nuanced properties, requiring researchers to make educated decisions as to which one to use for a given task. The experimental findings should prove useful to the aDNA and archaeological communities by guiding future research methodologies and ensuring precious archaeobotanical remains are studied in optimal ways, and may thereby yield important new perspectives on the interactions between humans and past plant communities. [ABSTRACT FROM AUTHOR]

The article presents the opinions of researchers on several papers presented at a discussion regarding the origin of agriculture. A researcher asserts that D. Rindos' models were not able to mention that human species involved into the co evolutionary interaction with lots of domesticates potentials. Other researcher appreciates Huw Barton's work on the roles of rice productivity in Southeast Asia and Borneo. Another researcher agrees with the critiques of I. Kuijt, Melinda A. Zeder and Bruce D. Smith that conceptual separation between social change and changes in subsistence is not important. Some reacts on the approaches of Zeder and Smith regarding human behavioral ecology (HBE), stating that they have misunderstood the concept of what HBE is.

In this paper, we discuss, from both biological and cultural perspectives, the ancient human-plant liaison that gave rise to Near Eastern agriculture. We explain the biological aspects of Near Eastern plant domestication by a comparative analysis of legume vs. cereal crop evolution. This comparison is illustrated by the natural distribution, ecological affinity, physiology, population structure, floral biology, growth habit, plant stature, seed dispersal mode, and seed dormancy of both wild and domesticated plants of these crop groups. We discuss the differences between Near Eastern legumes and cereals with regard to each of the above aspects, and we highlight the relevance of these differences with regard to Neolithic decision-making, adoption for farming, and subsequent evolution under domestication. We reached the following conclusions: (1) Near Eastern legumes underwent different evolutionary trajectories under domestication as compared with their companion cereals, despite apparent similarities between selection under domestication of both crop groups. (2) Careful comparison of pea, lentil, and chickpea shows that each of the Near Eastern legume crops has a unique evolutionary history in its own right, and this also holds true for the cereal crops. (3) The evolutionary history of each of the Near Eastern crops, prior to as well as after domestication, is well-reflected in its adaptation profile in present-day cropping systems, which determines each crop's relative economic importance in different world regions (e.g., chickpea is a major pulse in the Indian subcontinent, and pea is a more important crop in temperate regions, while barley has the widest adaptation, extending from high-latitude temperate regions to semi-arid Mediterranean systems). (4) Ancient choice-making, as reflected in the founder crops repertoire, involved nutritional considerations that may have outweighed grain yield per area and/or time unit criteria. [ABSTRACT FROM AUTHOR]

In plant breeding programs, qualitative and quantitative traits confer market value and, thus, constitute the basis for developing breeding criteria during crop domestication. Some traits such as high male/female fertility are advantageous in the wild and could enable the evolution of cultivated crops into invasive weeds. Other traits, e.g. sterility, are not expected to confer invasiveness. To date there has been very limited involvement in invasion risk assessment by plant breeders. Thus, in this paper we propose that trait-based selection of potential crop species be coupled with species design in the creation of a “non-invasive crop ideotype” as an avenue to reduce invasiveness during domestication. The non-invasive crop ideotype embodies the ideal characteristics for a crop to excel in cultivated environment(s) but minimizes the likelihood it will establish and spread in non-cultivated environments, constituting the underlying foundation for all breeding objectives, choice(s) of breeding methodologies, and propagation techniques for non-invasive crop release. Using ornamental (floriculture) horticultural crops as an example, we identify 10 traits to be used individually or in combination to reduce invasiveness while retaining commercial value: reduced genetic variation in propagules, slowed growth rates, non-flowering, elimination of asexual propagules, lack of pollinator rewards, non-shattering seed, non-fleshy fruits, lack of seed germination, sterility, and programmed death (apotopsis). A non-invasive crop ideotype would constitute the underlying foundation for all breeding objectives, the choice(s) of breeding methodologies, and propagation technique(s). The ideotype should be flexible and should adjust to species- and crop-specific traits to account for the intended use. For example, development of sterile cultivars may have negligible effects in reducing invasiveness if the crops spread vegetatively. A non-invasive crop ideotype may increase the direct participation of plant breeders, who are the professionals directly involved in the collection, development and release of new crops, in reducing the invasive potential of ornamental crops. Future research is required to determine the feasibility of incorporating each trait into various crops, use of classical or molecular techniques for creation of non-invasive crops, trait stability (lack of genotype × environment interaction over years and locations), consumer acceptance, and long-term viability. [ABSTRACT FROM AUTHOR]

Two types of selection operate (and complement each other) in plants under domestication: (a) conscious or intentional selection applied by the growers for traits of interest to them; (b) unconscious or automatic selection brought about by the fact that the plants concerned were taken from their original wild habitats and placed in new (and usually very different) human-made or human-managed environments. The shift in the ecology led automatically to drastic changes in selection pressures. Numerous adaptations vital for survival in the wild environments lost their fitness under the new sets of conditions. New traits were automatically selected, resulting in the build-up of characteristic "domestication syndromes," each fitting the specific agricultural environment provided by the .farmer. The present paper assesses the evolutionary consequences of the introduction of the wild plants into several sets of contrasting farming situations. These include: (a) the type of maintenance applied, whether seed planting or vegetative propagation; (b) the plant organs for which the crop has been grown, whether they are reproductive parts or vegetative parts; (c) the impact of the system of tilling, sowing, and reaping on the evolution of grain crops; (d) the impact of the horticultural environment on fruit crops. [ABSTRACT FROM AUTHOR]

In this project, domestication of one of the wild flowering plants, Achillea millefolium L. (yarrow plant) was done to find out its resistance to drought stress condition. Plant samples were collected from the Isfahan region of Iran and were further multiplied by divisions of plants. The study was conducted on the improvement of seeds germination using GA3, morphological and phenological study and to estimate drought tolerance of yarrow plants. The seeds of selected plants were treated with GA3 hormone (0, 250 and 500 ppm) to break the dormancy and improve the germination percentage. GA3 treatment improved the seed quality parameters and the best results were obtained with GA3 @ 500 ppm. The plants propagated through division were cultivated in the field for the domestication of plants and to estimate their potential for landscape purposes. Also, the Phenological cycle of plants was monitored. Attractive flowers, Long duration of flowering and applying green cover during the year was positive points of yarrow for using in the landscape. Irrigation was applied at 25%, 50%, 75% and 100% levels of available water from April to September. Morphological and physiological parameters showed that A. millefolium could significantly tolerate drought treatments until 50% of available water and even at 75%, plants could survive and produce new stems. [ABSTRACT FROM AUTHOR]

Human and animal nutrition is mainly based on seeds. Seed size is a key factor affecting seed yield and has thus been one of the primary objectives of plant breeders since the domestication of crop plants. Seed size is coordinately regulated by signals of maternal and zygotic tissues that control the growth of the seed coat, endosperm and embryo. Here, we provide previously unreported evidence for the role of DELLA proteins, key repressors of gibberellin responses, in the maternal control of seed size. The gain-of-function della mutant gai-1 produces larger seeds as a result of an increase in the cell number in ovule integuments. This leads to an increase in ovule size and, in turn, to an increase in seed size. Moreover, DELLA activity promotes increased seed size by inducing the transcriptional activation of AINTEGUMENTA, a genetic factor that controls cell proliferation and organ growth, in the ovule integuments of gai-1. Overall, our results indicate that DELLA proteins are involved in the control of seed size and suggest that modulation of the DELLA-dependent pathway could be used to improve crop yield. [ABSTRACT FROM AUTHOR]

Phylogenetic relationships of the Abyssinian pea (Pisum sativum ssp. abyssinicum) to other subspecies and species in the genus were investigated to test between different hypotheses regarding its origin and domestication. An extensive sample of the Pisum sativum ssp. sativum germplasm was investigated, including groups a-1, a-2, b, c, and d as identified by Kwon et al. (2012). A broad sample of P. fulvum but relatively few P. s. ssp. elatius accessions were analyzed. Partial sequences of 18 genes were compared and these results combined with comparisons of additional genes done by others and available in the literature. In total, 54 genes or gene fragment sequences were involved in the study. The observed affinities between alleles in P. ssp. sativum, P. s. ssp. abyssinicum, P. s. ssp. elatius, and P. fulvum clearly demonstrated a close relationship among the three P. sativum subspecies and rejected the hypothesis that the Abyssinian pea was formed by hybridization between one of the P. sativum subspecies and P. fulvum. If hybridization were involved in the generation of the Abyssinian pea, it must have been between P. s. ssp. sativum and P. s. ssp. elatius, although the Abyssinian pea possesses a considerable number of highly unique alleles, implying that the actual P. s. ssp. elatius germplasm involved in such a hybridization has yet to be tested or that the hybridization occurred much longer ago than the postulated 4000 years bp. Analysis of the P. s. ssp. abyssinicum alleles in genomic regions thought to contain genes critical for domestication indicated that the indehiscent pod trait was independently developed in the Abyssinian pea, whereas the loss of seed dormancy was either derived from P. s. ssp. sativum or at least partially developed before the P. s. ssp. abyssinicum lineage diverged from that leading to P. s. ssp. sativum. [ABSTRACT FROM AUTHOR]

De novo domestication is a novel trend in plant genetics, where traits of wild or semi-wild species are changed by the use of modern precision breeding techniques so that they conform to modern cultivation. Out of more than 300,000 wild plant species, only a few were fully domesticated by humans in prehistory. Moreover, out of these few domesticated species, less than 10 species dominate world agricultural production by more than 80% today. Much of this limited diversity of crop exploitation by modern humans was defined early in prehistory at the emergence of sedentary agro-pastoral cultures that limited the number of crops evolving a favorable domestication syndrome. However, modern plant genetics have revealed the roadmaps of genetic changes that led to these domestication traits. Based on such observations, plant scientists are now taking steps towards using modern breeding technologies to explore the potential of de novo domestication of plant species that were neglected in the past. We suggest here that in this process of de novo domestication, the study of Late Paleolithic/Late Archaic and Early Neolithic/Early Formative exploration of wild plants and identification of neglected species can help identify the barriers towards domestication. Modern breeding technologies may then assist us to break these barriers in order to perform de novo domestication to increase the crop species diversity of modern agriculture. [ABSTRACT FROM AUTHOR]

Sanguisorba minor Scop. is a wild edible species distributed in the Mediterranean area and present in numerous traditional food recipes. In the present study, the assessment of nutritional value (ash, carbohydrates, fat, proteins, energy, free sugars, organic acids, tocopherols, fatty acid composition, and minerals) of wild and domesticated S. minor plants was performed. Results showed an increase in ash, protein, fat, organic acid, and α-tocopherol content after the plant's domestication. Retention of free sugars, especially sucrose, was observed from wild plants to domesticated ones. However, the cultivated plants reported a higher content of polyunsaturated fatty acids than saturated molecules, and both wild collection and domestication maintained a low ω6/ω3 ratio, confirming the role of this species in the prevention of oxidative and inflammatory processes. This aspect is also suggested by the high α-tocopherol content, a vitamin known for its ability to scavenge free-radical species. Nevertheless, a high oxalic acid content was found in domesticated plants. However, the management of fertilization in open field cultivation can be robust in terms of organic acid and mineral (e.g., calcium) content. Indeed, the most representative macrominerals found in domesticated plants were Ca and Mg. The present study suggests a possible introduction of S. minor species in the human diet as a functional food or ingredient by virtue of its high nutritional properties and contents. Moreover, the management of fertilization and domestication might be a solution to maintain/enhance the nutritional profile of this wild species. [ABSTRACT FROM AUTHOR]

The vegetal macro-remains recovered at the site Los Conitos (northwestern Mendoza, Argentina) provide evidence of the consumption and management of wild and domestic plant species. Based on these data, the goal of this paper is to improve our understanding of the socio-economic process of gathering and management of plant species during the Late Holocene. The recovery method was dry screening. The chronology is based on eight radiocarbon dates that span the last three thousand years, which are evaluated in conjunction with macro-botanical remains. Of the 207 remains, Prosopis was the most ubiquitous. The excavation levels were grouped into four occupation components. In the oldest, component IV, no vegetal taxa were documented; component III includes the earliest presence of domestic plant remains, squash, and a predominance of wild plant species; component II shows a diversification of the use of plant resources; finally, component I included only wild plants. These data are explored with alternative explanations for the incorporation, replacement, or lasting presence of productive and gathering practices and that may be connected to: abiotic stresses that affect horticultural practices, demographic increase and intensification, and the arrival of migrants with a diversified subsistence base. The principal conclusion allows us to sketch a picture of the implementation of small-scale horticultural systems beginning around 1500 years ago, during which gathering continued to be important to subsistence. [ABSTRACT FROM AUTHOR]

Our experiments with crop progenitors have demonstrated that these species exhibit dramatic plasticity in key traits that are affected by domestication, including seed and fruit morphology. These traits can be altered by cultivating crop progenitors for a single season, in the absence of any selection for domesticated phenotypes. We hypothesize that cultivation caused environmental shifts that led to immediate phenotypic changes in crop progenitors via developmental plasticity, similar to tameness in animals. Here we focus on the loss or reduction of germination inhibitors in an annual seed crop because seeds with high dormancy are undesirable in crops, and also present a serious barrier to selective pressures that arise from seed-saving and planting by humans. Data from four seasons of observation of the crop progenitor Polygonum erectum L. suggest that the low plant density conditions of an agroecosystem trigger a phenotypic response that reduces germination inhibitors, eliminating a key barrier to further selection. The timing of the harvest can also be used to manipulate the germinability of seed stock. These observations suggest that genetic assimilation may have played a role in the domestication of this plant. More experimental work with crop progenitors is needed to understand whether or not this phenomenon played a part in the domestication of other plants, and to accurately interpret the significance of ancient plant phenotypes in the archaeological record. [ABSTRACT FROM AUTHOR]

Domestication of crops has changed how crops shape their associated microbial communities compared with their progenitors. However, studies testing how crop domestication-driven differences in rhizosphere microbial communities affect plant health are limited mostly to specific symbiont pairings. By conducting a soil manipulation greenhouse study, we examined plant growth and yield in response to differences in microbial communities and nutrient availability across a variety of wild, landrace, and commercially available 'Modern' potatoes. Coupled with this, we conducted 16S and internal transcribed spacer (ITS) amplicon sequencing to examine plant host- and soil treatment-driven differences in microbial community composition on potato plant roots. We found that the plant response to microbes (PRM) was context dependent. In low nutrient conditions, landraces responded positively to the presence of live soil microbial inocula. Conversely, modern potato varieties responded positively only in high nutrient conditions. Amplicon sequencing found differences in bacterial communities due to environmental and temporal factors. However, potato clade (e.g. Andigenum, Chiletanum, Solanum berthaultii , and 'Modern') alone did not lead to differences in microbial communities that accounted for PRM differences. Differences in PRM between landraces and modern potatoes, and the correlation of PRM to microbial diversity, suggest that domestication and subsequent breeding have altered the S. tuberosum response to rhizosphere microbiomes between Andigenum, Chiletanum, and North American potato varieties. [ABSTRACT FROM AUTHOR]

Domestication of new plants is one of the key (ongoing) phenomena in the history of agriculture. Wild plants are the ancestors of current and future crops and the largest reservoir of genetic diversity for crop breeding and improvement. Wild food species have been used for human nutrition since ancient times and are often the object of human strategies for coping with emergency situations, such as natural disasters and conflicts. We analyzed qualitative data collected through ethnobotanical field studies conducted in recent years in five selected Eurasian regions (Afghanistan, Kurdistan region of Iraq, Pakistan, Syria, and Ukraine) that have been recently affected by wars and/or socio-political turbulence. Data were collected through participant observation and semi-structured interviews with local people. We identified five taxa for each region, which are culturally very salient in the local food systems, that retain an important economic value in local markets, and that, therefore, could be good candidates for becoming novel crops. The cultivation of the reported species may significantly help local communities in their post-war livelihoods and especially in terms of food security and domestic nutritional care. Future studies should focus on the agronomic feasibility of the highlighted species within their regional ecosystems. [ABSTRACT FROM AUTHOR]

Research related to crop domestication has been transformed by technologies and discoveries in the genome sciences as well as information-related sciences that are providing new tools for bioinformatics and systems biology. Rapid progress in archaeobotany and ethnobotany are also contributing new knowledge to understanding crop domestication. This sense of rapid progress is encapsulated in this Special Issue, which contains 18 papers by scientists in botanical, crop sciences and related disciplines on the topic of crop domestication. One paper focuses on current themes in the genetics of crop domestication across crops, whereas other papers have a crop or geographic focus. One feature of progress in the sciences related to crop domestication is the availability of well-characterized germplasm resources in the global network of genetic resources centres (genebanks). Germplasm in genebanks is providing research materials for understanding domestication as well as for plant breeding. In this review, we highlight current genetic themes related to crop domestication. Impressive progress in this field in recent years is transforming plant breeding into crop engineering to meet the human need for increased crop yield with the minimum environmental impact – we consider this to be ‘super-domestication’. While the time scale of domestication of 10 000 years or less is a very short evolutionary time span, the details emerging of what has happened and what is happening provide a window to see where domestication might – and can – advance in the future. [ABSTRACT FROM AUTHOR]

Two opposing models currently dominate Near Eastern plant domestication research. The core area‐one event model depicts a knowledge‐based, conscious, geographically centered, rapid single‐event domestication, while the protracted‐autonomous model emphasizes a noncentered, millennia‐long process based on unconscious dynamics. The latter model relies, in part, on quantitative depictions of diachronic changes (in archaeological remains) in proportions of spikelet shattering to nonshattering, towards full dominance of the nonshattering (domesticated) phenotypes in cultivated cereal populations. Recent wild wheat genome assembly suggests that shattering and nonshattering spikelets may originate from the same (individual) genotype. Therefore, their proportions among archaeobotanical assemblages cannot reliably describe the presumed protracted‐selection dynamics underlying wheat domestication. This calls for a reappraisal of the "domestication syndrome" concept associated with cereal domestication. [ABSTRACT FROM AUTHOR]

Background: Plant microbiome composition has been demonstrated to change during the domestication of wild plants and it is suggested that this has resulted in loss of plant beneficial microbes. Recently, the seed microbiome of native plants was demonstrated to harbour a more diverse microbiota and shared a common core microbiome with modern cultivars. In this study the composition of the seed-associated bacteria of Glycine clandestina is compared to seed-associated bacteria of Glycine max (soybean). Results: The seed microbiome of the native legume Glycine clandestina (crop wild relative; cwr) was more diverse than that of the domesticated Glycine max and was dominated by the bacterial class Gammaproteobacteria. Both the plant species (cwr vs domesticated) and individual seed accessions were identified as the main driver for this diversity and composition of the microbiota of all Glycine seed lots, with the effect of factor "plant species" exceeded that of "geographical location". A core microbiome was identified between the two Glycine species. A high percentage of the Glycine microbiome was unculturable [G. clandestina (80.8%) and G. max (75.5%)] with only bacteria of a high relative abundance being culturable under the conditions of this study. Conclusion: Our results provided novel insights into the structure and diversity of the native Glycine clandestina seed microbiome and how it compares to that of the domesticated crop Glycine max. Beyond that, it also increased our knowledge of the key microbial taxa associated with the core Glycine spp. microbiome, both wild and domesticated. The investigation of this commonality and diversity is a valuable and essential tool in understanding the use of native Glycine spp. for the discovery of new microbes that would be of benefit to domesticated Glycine max cultivars or any other economically important crops. This study has isolated microbes from a crop wild relative that are now available for testing in G. max for beneficial phenotypes. [ABSTRACT FROM AUTHOR]

Common purslane (Portulaca oleracea L.), is both a wild plant and a weed, and is also recognized for its edible and nutritional value. This study determined morphological and biochemical characteristics of 25 accessions of common purslane. Seeds of the accessions were collected from various locations in Türkiye. The experiment was done four times; two repeats of it were used for recording morphological data while the other two were used for biochemical analysis. Results showed that the accessions BT-Altinkulak, Assem, and Yerli were respectively recorded for the highest plant height, root fresh weight, and plant fresh weight. The highest moisture content (95.14 %) and leaf fresh weight (39.18 g) were exhibited in the Yerli accession. Root length for all the accessions ranged from 18.2 to 30 cm. For biochemical characterization, the highest total phenolic content was found in accession Yagmur (685.4 mg AEE 100-1) while the highest total flavonoid content was found in Assya (0.569 mg mL-1). Anthocyanin was found the highest in Agr Tohum (1.09 μg mL-1). Cookies were prepared from a mix of common purslane accessions with three different leaf powder quantities i.e., 10 g, 20 g, and 30 g. In product development, cookies with 10 g common purslane powder were found to be the best for all sensory characteristics. Results showed that common purslane accessions are a rich source of various bioactive compounds and have highly diverse morphological and biochemical traits. This diversity among common purslane accessions will assist plant breeding programs in future for the domestication of this wild plant. [ABSTRACT FROM AUTHOR]

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Domestication and the first steps of sunflower breeding date back more than 4000 years. As an interesting crop to humans, sunflower underwent significant changes in the past to finally find its place as one of the most significant oil crops today. Substantial progress has already been made in understanding how sunflower was domesticated. Recent advances in molecular techniques with improved experimental designs contributed to further understanding of the genetic and molecular basis underlying the architectural and phenotypic changes that occurred during domestication and improvements in sunflower breeding. Understanding the domestication process and assessing the current situation concerning available genotypic variations are essential in order for breeders to face future challenges. A review of the tools that are used for exploring the genetic and genome changes associated with sunflower domestication is given in the paper, along with a discussion of their possible implications on classical sunflower breeding techniques and goals. [ABSTRACT FROM AUTHOR]

Legumes and cereals, which provide different nutrients, are cultivated as coupled crops in most centers of plant domestication worldwide. However, as the only legume domesticated in China, the spatio-temporal distribution of soybeans and its status in the millet- and rice-based agricultural system of the Neolithic and Bronze Ages remains elusive. Here, archaeobotanical evidence of soybeans (n=254), millet (n=462), rice (n=482), and zooarchaeological evidence of fish (n=138) were synthesized to elucidate the phenomenon of coupled or decoupled cereals and legumes in prehistoric China. During the Neolithic and Bronze Ages, soybeans was mostly confined to northern China and rarely found in southern China, serving as a companion to millet. In contrast, fish remains have been widely found in southern China, indicating a continuous reliance on fish as a staple food besides rice. Thus, an antipodal pattern of millet-soybeans and rice-fish agricultural systems may have been established in northern and southern China since the late Yangshao period (6000-5000 cal BP) respectively. These two agricultural systems were not only complementary in terms of diet, but they also exhibited positive interactions and feedback in the coculture system. Consequently, these two systems enabled the sustainable intensification of agriculture and served as the basis for the emergence of complex societies and early states in the Yellow and Yangtze Rivers. [ABSTRACT FROM AUTHOR]

The domestication of plants and the origin of agricultural societies has been the focus of much theoretical discussion on why, how, when, and where these happened. The 'when' and 'where' have been substantially addressed by different branches of archaeology, thanks to advances in methodology and the broadening of the geographical and chronological scope of evidence. However, the 'why' and 'how' have lagged behind, holding on to relatively old models with limited explanatory power. Armed with the evidence now available, we can return to theory by revisiting the mechanisms allegedly involved, disentangling their connection to the diversity of trajectories, and identifying the weight and role of the parameters involved. We present the Human-Plant Coevolution (HPC) model, which represents the dynamics of coevolution between a human and a plant population. The model consists of an ecological positive feedback system (mutualism), which can be reinforced by positive evolutionary feedback (coevolution). The model formulation is the result of wiring together relatively simple simulation models of population ecology and evolution, through a computational implementation in R. The HPC model captures a variety of potential scenarios, though which conditions are linked to the degree and timing of population change and the intensity of selective pressures. Our results confirm that the possible trajectories leading to neolithisation are diverse and involve multiple factors. However, simulations also show how some of those factors are entangled, what are their effects on human and plant populations under different conditions, and what might be the main causes fostering agriculture and domestication. [ABSTRACT FROM AUTHOR]

Studies investigating the mechanisms underlying the variation of photosynthesis along plant phylogeny and especially during domestication are of great importance, and may provide new insights to further improve crop photosynthesis. In the present study, we compiled a database including 542 sets of data of leaf gas exchange parameters and leaf structural and chemical traits in ferns and fern allies, gymnosperms, non-crop angiosperms, and crops. We found that photosynthesis was dramatically improved from ferns and fern allies to non-crop angiosperms, and further increased in crops. The improvement of photosynthesis during phylogeny and domestication was related to increases in carbon dioxide diffusional capacities and, to a lesser extent, biochemical capacity. Cell wall thickness rather than chloroplast surface area facing intercellular airspaces drives the variation of mesophyll conductance. The variation of the maximum carboxylation rate was not related to leaf nitrogen content. The slope of the relationship between mass-based photosynthesis and nitrogen was lower in crops than in non-crop angiosperms. These findings suggest that the manipulation of cell wall thickness is the most promising approach to further improve crop photosynthesis, and that an increase of leaf nitrogen will be less efficient in improving photosynthesis in crops than in non-crop angiosperms. [ABSTRACT FROM AUTHOR]

Michoacan state has a long history in plant domestication's. Physalis ixocarpa is a native plant that growth associated to maize crops from this region. Due to the domestication process includes the adaptation to environmental factors, we ask if (1) Does P. ixocarpa has the capacity of association with bacterial communities of the zone where it was domesticated? and (2) Does the rhizobiome of this plant can increase the potential functions in the soil? An experiment was established in a traditional milpa system. Samples of rhizobiome from corn, P. ixocarpa, P. philadelphica, and soil were sequenced using Next Generation Sequencing in the region 16S. The potential function, metabolic pathway reconstruction and participation of each bacteria genus was inferred using iVikodak platform. A total of 34 Phyla and 795 genera were identified. Purine metabolism's was the principal function, where all rhizobiomes showed similar metabolic pathways. However, the difference among plant species is the participation of the distinct genera in the Purine metabolism. We conclude that the rhizobiome of P. ixocarpa maintains the capacity of bacterial association in the region and shows complementarity for the soil functions. Therefore, their utilization can be helpful in zones where the agricultural practices have degraded microbiological soil conditions. [ABSTRACT FROM AUTHOR]

The pistachio (Pistachio vera L.) is commercially cultivated in semi-arid regions around the globe. Archaeobotanical, genetic, and linguistic data suggest that the pistachio was brought under cultivation somewhere within its wild range, spanning southern Central Asia, northern Iran, and northern Afghanistan. Historically, pistachio cultivation has primarily relied on grafting, suggesting that, as with many Eurasian tree crops, domestication resulted from genetically locking hybrids or favored individuals in place. Plant domestication and dispersal research has largely focused on weedy, highly adaptable, self-compatible annuals; in this discussion, we present a case study that involves a dioecious long-lived perennial—a domestication process that would have required a completely different traditional ecological knowledge system than that utilized for grain cultivation. We argue that the pistachio was brought under cultivation in southern Central Asia, spreading westward by at least 2000 years ago (maybe a few centuries earlier to the mountains of modern Syria) and moved eastward only at the end of the first millennium AD. The seeds remain rare in archaeological sites outside its native range, even into the mid-second millennium AD, and may not have been widely cultivated until the past few hundred years. [ABSTRACT FROM AUTHOR]

Wheat is one of the Neolithic founder crops domesticated ~10 500 years ago. Following the domestication episode, its evolution under domestication has resulted in various genetic modifications. Grain weight, embryo weight, and the interaction between those factors were examined among domesticated durum wheat and its direct progenitor, wild emmer wheat. Experimental data show that grain weight has increased over the course of wheat evolution without any parallel change in embryo weight, resulting in a significantly reduced (30%) embryo weight/grain weight ratio in domesticated wheat. The genetic factors associated with these modifications were further investigated using a population of recombinant inbred substitution lines that segregated for chromosome 2A. A cluster of loci affecting grain weight and shape was identified on the long arm of chromosome 2AL. Interestingly, a novel locus controlling embryo weight was mapped on chromosome 2AS, on which the wild emmer allele promotes heavier embryos and greater seedling vigour. To the best of our knowledge, this is the first report of a QTL for embryo weight in wheat. The results suggest a differential selection of grain and embryo weight during the evolution of domesticated wheat. It is argued that conscious selection by early farmers favouring larger grains and smaller embryos appears to have resulted in a significant change in endosperm weight/embryo weight ratio in the domesticated wheat. Exposing the genetic factors associated with endosperm and embryo size improves our understanding of the evolutionary dynamics of wheat under domestication and is likely to be useful for future wheat-breeding efforts. [ABSTRACT FROM AUTHOR]