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Abstract: The Coral Triangle (CT) region of the Indo‐Pacific realm harbors an extraordinary number of species, with richness decreasing away from this biodiversity hotspot. Despite multiple competing hypotheses, the dynamics underlying this regional diversity pattern remain poorly understood. Here, we use a time‐calibrated evolutionary tree of living reef coral species, their current geographic ranges, and model‐based estimates of regional rates of speciation, extinction, and geographic range shifts to show that origination rates within the CT are lower than in surrounding regions, a result inconsistent with the long‐standing center of origin hypothesis. Furthermore, endemism of coral species in the CT is low, and the CT endemics are older than relatives found outside this region. Overall, our model results suggest that the high diversity of reef corals in the CT is largely due to range expansions into this region of species that evolved elsewhere. These findings strongly support the notion that geographic range shifts play a critical role in generating species diversity gradients. They also show that preserving the processes that gave rise to the striking diversity of corals in the CT requires protecting not just reefs within the hotspot, but also those in the surrounding areas. [ABSTRACT FROM AUTHOR]

Aim: Giant clams are iconic bivalves known to serve numerous ecological roles contributing to the functioning of coral reef ecosystems. In the next decade, giant clams will continue to face critical anthropogenic pressures from over‐exploitation for their meat and shells, the aquarium trade and global warming that threaten the persistence of their species. Here, we assess the relationships between different biodiversity components to inform conservation prioritization and management. Location: Indo‐Pacific marine realm. Methods: We quantified taxonomic, functional and phylogenetic diversity measures throughout 25 marine provinces and assessed their relationships for all 12 giant clam species in the subfamily Tridacninae. These biodiversity measures were used to identify potentially threatened species that contribute disproportionately to trait and evolutionary diversity and to highlight areas for global conservation prioritization of giant clam species. Results: Analyses show positive correlations among species richness (SR), functional diversity (FD) and phylogenetic diversity (PD), with the strongest relationship between FD and PD. However, spatial patterns of higher‐than‐expected FD and PD are incongruent with SR patterns, indicating that SR omits information associated with functional and phylogenetic diversity. Among the giant clam species, Tridacna gigas and Hippopus spp. have the greatest functional and evolutionary diversity contributions within assemblies, respectively. Spatial analyses reveal that the Bay of Bengal, Andaman and numerous parts of the eastern Indo‐Pacific potentially hold higher‐than‐expected FD and PD levels relative to their SR and thus warrant more attention with respect to conserving the diversity of giant clams. Conclusions: Our findings underscore the importance of integrating functional trait contributions and evolutionary diversity into conservation planning to better differentiate giant clam assemblages, as it remains challenging to implement dedicated conservation given the limited resources. This study provides comprehensive biodiversity information for managers to initiate measures that holistically capture species' ecological and evolutionary standings across global reef ecosystems. [ABSTRACT FROM AUTHOR]

Marine fungal biodiversity remains vastly understudied, and even less is known of their biogeography and the processes responsible for driving these distributions in marine environments. We investigated the fungal communities associated with the seagrass Enhalus acoroides collected from Singapore and Peninsular Malaysia to test the hypothesis that fungal communities are homogeneous throughout the study area. Seagrass samples were separated into different structures (leaves, roots, and rhizomes), and a sediment sample was collected next to each plant. Amplicon sequencing of the fungal internal transcribed spacer 1 and subsequent analysis revealed significant differences in fungal communities collected from different locations and different structures. We show a significant pattern of distance decay, with samples collected close to each other having more similar fungal communities in comparison with those that are more distant, indicating dispersal limitations and/or differences in habitat type are contributing to the observed biogeographic patterns. These results add to our understanding of the seagrass ecosystem in an understudied region of the world that is also the global epicenter of seagrass diversity. This work has implications for seagrass management and conservation initiatives, and we recommend that fungal community composition be a consideration for any seagrass transplant or restoration programme. [ABSTRACT FROM AUTHOR]

Since the release of the MinION sequencer in 2014, it has been applied to great effect in the remotest and harshest of environments, and even in space. One of the most common applications of MinION is for nanopore-based DNA barcoding in situ for species identification and discovery, yet the existing sample capability is limited (n ≤ 10). Here, we assembled a portable sequencing setup comprising the BentoLab and MinION and developed a workflow capable of processing 32 samples simultaneously. We demonstrated this enhanced capability out at sea, where we collected samples and barcoded them onboard a dive vessel moored off Sisters' Islands Marine Park, Singapore. In under 9 h, we generated 105 MinION barcodes, of which 19 belonged to fresh metazoans processed immediately after collection. Our setup is thus viable and would greatly fortify existing portable DNA barcoding capabilities. We also tested the performance of the newly released R10.3 nanopore flow cell for DNA barcoding, and showed that the barcodes generated were ~99.9% accurate when compared to Illumina references. A total of 80% of the R10.3 nanopore barcodes also had zero base ambiguities, compared to 50–60% for R9.4.1, suggesting an improved homopolymer resolution and making the use of R10.3 highly recommended. [ABSTRACT FROM AUTHOR]