1. Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton
- Author
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Haihong Shang, Hongbin Li, Guanghui Xiao, Shen Qian, Zhifang Li, Huiran Shi, Lingling Dou, Huaizhu Li, Wenbo Wang, and Changsong Zou
- Subjects
0106 biological sciences ,lcsh:QH426-470 ,lcsh:Biotechnology ,Gossypium hirsutum ,Biology ,01 natural sciences ,Genome ,Expression analysis ,Transcriptome ,03 medical and health sciences ,Plant Growth Regulators ,Auxin ,Gene Expression Regulation, Plant ,lcsh:TP248.13-248.65 ,Arabidopsis ,Genetics ,Gene family ,Cotton Fiber ,Gene ,Phylogeny ,030304 developmental biology ,Synteny ,Plant Proteins ,chemistry.chemical_classification ,0303 health sciences ,Gossypium ,food and beverages ,biology.organism_classification ,lcsh:Genetics ,chemistry ,Fiber cell ,Multigene Family ,WAK genes ,010606 plant biology & botany ,Biotechnology ,Research Article - Abstract
Background Wall-associated kinases (WAK), one of the receptor-like kinases (RLK), function directly in the connection and communication between the plant cell wall and the cytoplasm. WAK genes are highly conserved and have been identified in plants, such as rice, but there is little research on the WAK gene family in cotton. Results In the present study, we identified 29 GhWAK genes in Gossypium hirsutum. Phylogenetic analysis showed that cotton WAK proteins can be divided into five clades. The results of synteny and Ka/Ks analysis showed that the GhWAK genes mainly originated from whole genome duplication (WGD) and were then mainly under purifying selection. Transcriptome data and real-time PCR showed that 97% of GhWAK genes highly expressed in cotton fibers and ovules. β-glucuronidase (GUS) staining assays showed that GhWAK5 and GhWAK16 expressed in Arabidopsis leaf trichomes. Fourteen GhWAK genes were found to possess putative gibberellin (GA) response elements in the promoter regions, 13 of which were significantly induced by GA treatment. Ten GhWAK genes contained auxin (IAA) response elements and the expression level of nine GhWAKs significantly increased under auxin treatment. Conclusions We provide a preliminary analysis of the WAK gene family in G. hirsutum, which sheds light on the potantial roles of GhWAK genes in cotton fiber cell development. Our data also provides a useful resource for future studies on the functional roles of GhWAK genes.
- Published
- 2021