29 results on '"Aliyazicioglu, Yuksel"'
Search Results
2. Identification of a Novel hsa_circ_0058058/miR-324-5p Axis and Prognostic/Predictive Molecules for Acute Myeloid Leukemia Outcome by Bioinformatics-Based Analysis
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Misir, Sema, Ozer Yaman, Serap, Petrović, Nina, Šami, Ahmad, Akidan, Osman, Hepokur, Ceylan, Aliyazicioglu, Yuksel, Misir, Sema, Ozer Yaman, Serap, Petrović, Nina, Šami, Ahmad, Akidan, Osman, Hepokur, Ceylan, and Aliyazicioglu, Yuksel
- Abstract
Acute myeloid leukemia (LAML) is one of the most prevalent hematological malignancies. In recent years, while targeted approaches have shown promise in the fight against cancer, the treatability and prognosis of patients remain inadequate due to the shortage of drugs. Noncoding RNAs, especially circular RNA (circRNA) and microRNA (miRNA), have been shown to play a unique role in tumor development. This study aims to identify the disease-associated circRNA–miRNA– mRNA network by bioinformatic analysis and investigate the mechanisms in the development and progression of LAML. Additionally, it reveals the promising roles of these molecules as a diagnostic biomarker and therapeutic target for LAML treatment. Using various bioinformatics approaches, we identified the hsa_circ_0058058/miR-324-5p axis in LAML and its possible functions in LAML development. According to our results, hsa circ-0058058 can regulate the expression of AP1G1 and SP1 through miR-324-5p to support angiogenesis, the cell cycle, and DNA replication processes. Downregulation of hsa circ-0058058 may contribute to the anticancer functions of miR-324-5p on LAML tumorigenesis, and upregulation of miR-324-5p can abolish the oncogenic effects of AP1G1 and SP1 on LAML tumorigenesis. Additionally, highly enriched pathways indicated possible interactions between molecules underlying LAML pathology. Targeted molecules within this network may be able to function as therapeutic and diagnostic biomarkers for disease, while more research and clinical confirmation are needed.
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- 2024
3. Evaluation of the analytical performance of 80 parameters analyzed in routine biochemistry laboratory by process sigma methodology.
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Esen, Mehtap, Karahan, Suleyman Caner, Orem, Asim, Aliyazicioglu, Yuksel, and Yavuz, Hatice Bozkurt
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SIX Sigma ,BIOCHEMISTRY laboratory manuals ,BIOLOGICAL variation ,QUALITY control ,MEDICAL personnel ,MEDICAL emergencies - Abstract
Objectives: The Six Sigma methodology is also frequently used by clinical laboratories as an objective and quantitative way to measure quality. In our study, we aimed to evaluate the analytical performance of 80 tests using the Six Sigma methodology according to the CLIA (Clinical Laboratory Improvement Amendments) 2019, RICOS BV (Dr. Carmen RI-COS Biological Variation) Desirable, and EFLM BV (European Federation of Clinical Chemistry and Laboratory Medicine Biological Variation) Desirable criteria. Methods: The sigma values of 80 tests were calculated according to the TEa (Total Allowable Error) limits allowed by all three references using internal quality control and external quality control data. They were calculated monthly for 12 months, and the annual average was taken. Sigma values were calculated with the Six Sigma formula. Results: Considering the total number of goals reached, the highest success rate of 60% was achieved according to the CLIA goals, while the lowest success rate of 36% was obtained according to the EFLM BV Desirable criteria. Although exactly the same laboratory data are used, this gap between the sigma values obtained according to the selected reference is especially noticeable in tests such as Na (Sodium), K (Potassium), Cl (Chloride), Calcium, HbA1c (Hemoglobin A1c), and Troponin T. Conclusion: The Six Sigma protocol is one of the effective and universal tools for evaluating the performance of clinical laboratories. However, one of its biggest limitations is the lack of standardization in tolerance limits. The obtained performance varies according to the preferred reference. Therefore, we think that in the Six Sigma methodology, it is more feasible to select Total Allowable Error criteria from different references according to their suitability for the test. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Cytotoxic effect of Rosa canina extract on human colon cancer cells through repression of telomerase expression
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Turan, Ibrahim, Demir, Selim, Kilinc, Kagan, Yaman, Serap Ozer, Misir, Sema, Kara, Hanife, Genc, Berna, Mentese, Ahmet, Aliyazicioglu, Yuksel, and Deger, Orhan
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- 2018
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5. Primula vulgaris extract induces cell cycle arrest and apoptosis in human cervix cancer cells
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Demir, Selim, Turan, Ibrahim, Aliyazicioglu, Rezzan, Yaman, Serap Ozer, and Aliyazicioglu, Yuksel
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- 2018
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6. circRNAs in drug resistance of breast cancer
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MISIR, SEMA, primary, OZER YAMAN, SERAP, additional, PETROVIĆ, NINA, additional, SUMER, CEREN, additional, HEPOKUR, CEYLAN, additional, and ALIYAZICIOGLU, YUKSEL, additional
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- 2022
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7. Saline replacement as a practical solution to matrix interference effect when a leukocyte differential count cannot be measured in chemotherapy patient samples.
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Yavuz, Hatice Bozkurt, Yaman, Huseyin, Tat, Mustafa, Akidan, Osman, Orem, Asim, Karahan, Suleyman Caner, and Aliyazicioglu, Yuksel
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SALINE waters ,LEUCOCYTES ,CANCER chemotherapy ,HEMATOLOGY ,MONOCYTES - Abstract
Objectives: An automated complete blood cell count (hematology) analyzer cannot measure the white blood cell (WBC) differential of some patient sample, notably those of chemotherapy patients. This is often due to the presence of atypical cells in the sample or matrix changes caused by drugs. A technique to use isotonic sodium chloride solution (0.9% saline) as a replacement for plasma has previously been described. The aim of this study was to evaluate to use of saline replacement as a means to resolve the matrix interference effect and achieve a reliable WBC differential count for chemotherapy patients. Methods: Samples of 29 chemotherapy patients whose WBC differential count could not be calculated using a Beckman Coulter LH-780 hematology autoanalyzer (Beckman Coulter, Inc., Brea, CA, USA) were evaluated. A peripheral blood smear was performed and the saline replacement technique was applied and the samples were then re-analyzed using the same autoanalyzer. The WBC count and differential count of WBC of a peripheral smear and a saline-replacement sample were compared. Results: There was no statistically significant difference between the peripheral blood smear and saline replacement autoanalyzer measurements of the WBC differential count and percent of WBC. Strong relationships in WBC (r=0.99), neutrophil (r=0.98), lymphocyte (r=0.98), monocyte (r=0.91), and eosinophil (r=0.77) counts were observed in a comparison of the peripheral blood smear and saline replacement measurements. Conclusion: A saline replacement technique may be a practical solution to resolve the difficulty of the matrix interference effect seen in chemotherapy patient samples and provide a WBC differential count. [ABSTRACT FROM AUTHOR]
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- 2021
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8. Cytotoxic Effect of Rhododendron luteum Leaf Extract on Human Cancer Cell Lines
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DEMİR, Selim, TURAN, İbrahim, and ALIYAZICIOGLU, Yuksel
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Fen ,Antioksidan aktivite,Fenolikler,Kanser,Rhododendron luteum,Sitotoksisite ,Science ,Antioxidant activity,Cancer,Cytotoxicity,Phenolics,Rhododendron luteum - Abstract
Rhododendronluteum, Rhododendron cinsine dahil bir bitkiolup, bu cinse ait bitkiler geleneksel tedavide sıklıkla kullanılmaktadır. Rhododendron türlerinin sitotoksiketkilerini araştıran çok sayıda çalışma olmasına rağmen, R. luteum türünün sitotoksik etkilerini inceleyen çalışmalarsınırlıdır. Bu çalışmanın amacı R. luteumyaprak ekstraktının antioksidan özelliklerini ve insan kanser hücreleri üzerindekisitotoksik etkisini araştırmaktır. Ekstraktın toplam fenolik içeriği (TPC),toplam flavonoid içeriği (TFC) ve indirgeyici gücü spektrofotometrikprosedürler kullanılarak değerlendirildi. Ekstraktın beş kanser (insan meme,kolon, akciğer, prostat ve karaciğer karsinomu) ve insan fibroblast hücreleriüzerindeki sitotoksik etkisi MTT analizi kullanılarak belirlendi. EkstraktınTPC ve indirgeyici güç değerleri g örnek başına sırasıyla 173.2±3.97 mg gallikasit eşdeğeri ve 629.5±3.49 mg troloks eşdeğeri olarak bulundu. R. luteum yaprak ekstraktı normalfibroblast hücrelerine kıyasla özellikle kolon (1.9 kat) ve karaciğer (2.2 kat)kanser hücrelerine karşı seçici sitotoksisite sergiledi. Bu çalışma R. luteum yaprak ekstraktınınantiproliferatif etkisini ortaya koyan ilk çalışmadır. Ekstraktta bulunansitotoksik moleküllerin tanımlanması ve etki mekanizmalarının belirlenmesi içindaha kapsamlı çalışmalara ihtiyaç vardır., Rhododendron luteum belongs to the genus Rhododendron, membersof which are frequently used in folk medicine. Various studies haveinvestigated the cytotoxic effect of different Rhododendron species, butthere have been limited studies of the cytotoxic effect of R. luteum.The aim of this study was to investigate the antioxidant properties andcytotoxic effect of R. luteum leaf extract on the human cancer cells.The total phenolic content (TPC), total flavonoid content (TFC), and reducingpower of the extract were evaluated using spectrophotometric procedures. Thecytotoxic effect of the extract on five cancers (human breast, colon, lung,prostate, and liver carcinoma) and human fibroblast cells was determined usingthe MTT assay. TPC and reducing power values of extract were found 173.2±3.97mg gallic acid equivalents, and 629.5±3.49 mg trolox equivalents per to gsample, respectively. R. luteum leafextract exhibited selective cytotoxicity especially against colon (1.9 fold)and liver (2.2 fold) cancer cells compared to normal fibroblast cells. This isthe first study to reveal the antiproliferative effect of R. luteum leaf extract. Further studies are now needed to identifythe cytotoxic molecules in the extract and their mechanisms.
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- 2018
9. Evaluation of the radioprotective effect of Turkish propolis on foreskin fibroblast cells
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Yalcin, Can, Aliyazicioglu, Yuksel, Demir, Selim, Turan, Ibrahim, Bahat, Zumrut, Misir, Sema, and Deger, Orhan
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Propolis -- Analysis ,DNA damage -- Analysis ,Fibroblasts -- Analysis ,Health - Abstract
Byline: Can. Yalcin, Yuksel. Aliyazicioglu, Selim. Demir, Ibrahim. Turan, Zumrut. Bahat, Sema. Misir, Orhan. Deger Aim of Study: Propolis is a resinous bee product, rich of polyphenolic compounds and flavonoids. [...]
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- 2016
10. Turkish Propolis Extract Increases Apoptosis via Induction of Mitochondrial Membrane Potential Loss in MCF-7 Cells
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Misir, Sema, primary, Demir, Selim, additional, Turan, Ibrahim, additional, and Aliyazicioglu, Yuksel, additional
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- 2017
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11. A nationwide multicentre study in Turkey for establishing reference intervals of haematological parameters with novel use of a panel of whole blood
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Ozarda, Yesim, primary, Ichihara, Kiyoshi, additional, Bakan, Ebubekir, additional, Polat, Harun, additional, Ozturk, Nurinnisa, additional, Baygutalp, Nurcan K., additional, Taneli, Fatma, additional, Guvenc, Yesim, additional, Ormen, Murat, additional, Erbayraktar, Zubeyde, additional, Aksoy, Nurten, additional, Sezen, Hatice, additional, Demir, Meltem, additional, Eskandari, Gulcin, additional, Polat, Gurbuz, additional, Mete, Nuriye, additional, Yuksel, Hatice, additional, Vatansev, Husamettin, additional, Gun, Fatma, additional, Akin, Okhan, additional, Ceylan, Ozlem, additional, Noyan, Tevfik, additional, Gozlukaya, Ozgul, additional, Aliyazicioglu, Yuksel, additional, Kahraman, Sevim, additional, Dirican, Melahat, additional, Tuncer, Gul Ozlem, additional, Kimura, Shogo, additional, and Eker, Pinar, additional
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- 2017
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12. Antiproliferative and apoptotic effect of Morus nigra extract on human prostate cancer cells
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Turan, Ibrahim, primary, Demir, Selim, additional, Kilinc, Kagan, additional, Burnaz, Nesibe Arslan, additional, Yaman, Serap Ozer, additional, Akbulut, Kubra, additional, Mentese, Ahmet, additional, Aliyazicioglu, Yuksel, additional, and Deger, Orhan, additional
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- 2017
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13. Protective effect of Primula vulgaris against H2O2-induced DNA damage in fibroblast cells
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Aliyazicioglu Rezzan, Ozkan Mehtap Tugce, Demir Selim, Misir Sema, Aliyazicioglu Yuksel, and Bedir Abdulkerim
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fibroblast cells ,lcsh:Genetics ,Primula vulgaris ,lcsh:QH426-470 ,Genetics ,Molecular Medicine ,Comet Assay ,reactive oxygen species (ROS) ,Genetics (clinical) ,DNA Damage - Abstract
Oxidative stress comes out as a result of an imbalance between the reactive oxygen species (ROS) and antioxidant defenses. ROS besides damaging cellular molecules such as proteins and lipids, can also cause the formation of strand breaks and pyrimidine- and purine-derived lesions in DNA, thus leading to genome destabilization. To protect biomolecules against the attack of free radicals and/or to prevent the damage from happening, numerous natural and synthetic free radical scavengers and antioxidants have been developed and studied. Primula is a plant genius which comprises about 400 species. It is accepted as a good antioxidant source due to its phenolic contents. The aim of this study was to evaluate the protective effects of the water extract of Primula vulgaris on fibroblast cells exposed to oxidative agents by comet assay. Fibroblast cells (passage number is between 1 and 6) were pre-treated for 1 h with different concentrations (100, 250, and 500 µg/mL) of water extracts Primula vulgaris before the genotoxic agent. Then, the cells were treated with 20 µM H2O2 at 5 minutes and comet assay was performed. The water extracts of Primula vulgaris significantly decreased H2O2-induced DNA damage at the concentrations of 250 and 500 µg/mL (P
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- 2015
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14. Evaluation of the radioprotective effect of Turkish propolis on foreskin fibroblast cells
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Aliyazicioglu, Yuksel, primary, Yalcin, CanOzgur, additional, Demir, Selim, additional, Turan, Ibrahim, additional, Bahat, Zumrut, additional, Misir, Sema, additional, and Deger, Orhan, additional
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- 2016
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15. Hepcidin levels in children with chronic liver disease
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Cakir, Murat, primary, Erduran, Erol, additional, Turkmen, ElifSag, additional, Aliyazicioglu, Yuksel, additional, Reis, GokcePinar, additional, Cobanoglu, Umit, additional, and Demir, Selim, additional
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- 2015
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16. Lack of significant difference between internal spermatic vein and brachial vein ischemia modified albumin levels in patients with varicocele
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Aliyazicioglu, Yuksel, primary, Ozbek, Emin, additional, Ozcan, Levent, additional, Cakir, S. Sami, additional, and Dursun, Murat, additional
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- 2013
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17. Evaluation of the radioprotective effect of Turkish propolis on foreskin fibroblast cells.
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Ozgur Yalcin, Can, Aliyazicioglu, Yuksel, Demir, Selim, Turan, Ibrahim, Bahat, Zumrut, Misir, Sema, Deger, Orhan, and Yalcin, Can Ozgur
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RADIATION-protective agents , *PROPOLIS , *FIBROBLASTS , *FLAVONOIDS , *DNA damage , *CELL lines , *DOSE-effect relationship in pharmacology , *RADIATION , *TIME , *PLANT extracts , *PHARMACODYNAMICS - Abstract
Aim Of Study: Propolis is a resinous bee product, rich of polyphenolic compounds and flavonoids. It is known that in different geographic zones its chemical composition varies due to the different plant sources. Many biological properties including antimicrobial, antioxidative, anti-inflammatory, antitumoral, antigenotoxic, antimutagenic, cytostatic activities have been ascribed to propolis. These biological effects are predominantly attributed to its content of polyphenols. In this study, we aimed to evaluate the radioprotective effect of ethanolic extract of Turkish propolis. (EETP) against γ-ray-induced DNA damage on fibroblast cells using comet assay for the first time.Materials and Methods: Fibroblast cells were pretreated 15 and 30 min with concentrations of 100, 200 and 300 μg/mL EETP then they were exposed to 3 Gy γ-rays. Amifostine (synthetic aminothiol compound) was used as a positive control.Results: The results showed a significant decrease in γ-ray-induced DNA damage on cells treated with EETP and amifostine when compared to only irradiated cells. (P < 001).Conclusion: It was concluded that EETP prevent γ-ray-induced DNA damage in fibroblast cells and might have radioprotective activity. [ABSTRACT FROM AUTHOR]- Published
- 2016
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18. An Investigation of the Protective Effect of Rhododendron luteum Extract on Cisplatin-Induced DNA Damage and Nephrotoxicity and Biochemical Parameters in Rats.
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Turan, Ibrahim, Canbolat, Deniz, Demir, Selim, Kerimoglu, Gokcen, Colak, Fatih, Alemdar, Nihal Turkmen, Mentese, Ahmet, and Aliyazicioglu, Yuksel
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CHLOROGENIC acid , *OXIDANT status , *CREATININE , *NEPHROTOXICOLOGY , *TUMOR necrosis factors , *LIQUID chromatography-mass spectrometry , *BLOOD urea nitrogen , *DNA damage - Abstract
The nephrotoxicity mechanisms caused by cisplatin (CP), which is used in the treatment of different types of cancer, include several processes, such as DNA damage, apoptosis, inflammation, and oxidative stress. This study investigated the protective effects of Rhododendron luteum leaf extract (RLE) in a rat model of CPinduced nephrotoxicity. Dimethyl sulfoxide extract of RLE was prepared, and its contents were clarified using liquid chromatography-mass spectrometry (LC-MSMS). Thirty female Wistar Albino rats were divided into five different groups and sacrificed on the seventh day. Biochemical and histopathological analyses were then performed. The presence of quercitrin, quinic acid, chlorogenic acid, protocatechic acid, isoquercitrin, and quercetin was detected in the RLE. While CP significantly increased the levels of oxidative stress, inflammation, and apoptosis markers in the rat kidney tissue and blood samples, treatment with RLE significantly reversed the levels of these parameters in a dose-dependent manner. Total antioxidant status (TAS) values and glutathione (GSH) levels increased significantly in the serum samples from the treatment group compared to the CP group, while blood urea nitrogen (BUN), creatinine, oxidative stress index (OSI), tumor necrosis factor-alpha (TNF-α), malondialdehyde (MDA) and total oxidant status (TOS) values decreased significantly. GSH levels increased significantly in the treatment group compared to the CP group, while TNF-α, caspase-3 (Casp-3), 8-hydroxy-2'-deoxyguanosine (8-OHdG), OSI, TOS, MDA levels, and damage scores decreased significantly at histopathological examination. In conclusion, RLE exhibited strong protective effects against nephrotoxicity and oxidative damage caused by CP in rats. [ABSTRACT FROM AUTHOR]
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- 2023
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19. Antioxidant, Antigenotoxic, Antimicrobial Activities and Phytochemical Analysis of Dianthus carmelitarum.
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Aliyazicioglu, Rezzan, Demir, Selim, Badem, Merve, Sener, Sila Ozlem, Korkmaz, Nuriye, Demi, Elif Ayazoglu, Ozgen, Ufuk, Karaoglu, Sengul Alpay, and Aliyazicioglu, Yuksel
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PHYTOCHEMICALS , *ANTIOXIDANTS , *ANTI-infective agents , *PINKS (Plants) , *CHLOROGENIC acid - Abstract
In this study, we investigated the phytochemical composition, antioxidant, antimicrobial, and antigenotoxic properties of the aqueous extract of Dianthus carmelitarum for the first time. The phenolic and volatile compounds, antioxidant, antimicrobial and antigenotoxic activities of the extract were determined by HPLC and SPME-GC-FID/MS, spectrophotometric, agar well diffusion methods and comet assay, respectively. The polyphenolic content and ferric reducing power values of the extract were found 12.6 ± 0.27 mg gallic acid and 238 ± 2.89 μM trolox equivalents per g sample, respectively. Syringaldehyde and chlorogenic acid were detected as major phenolic compounds, while terpenes were determined as major volatile compound. Dianthus carmelitarum extract especially exhibited moderate antimicrobial activity against Mycobacterium smegmatis. Extract reduced H2O2-induced DNA damage in a concentration dependent manner in fibroblast cells compared to positive control (only 20 μM H2O2 treatment). Dianthus carmelitarum can be considered in the food, cosmetic, and drug industries due to its antioxidant, antimicrobial, and antigenotoxic activities. [ABSTRACT FROM AUTHOR]
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- 2017
20. Cytotoxic Effect of Turkish Propolis on Liver, Colon, Breast, Cervix and Prostate Cancer Cell Lines.
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Turan, Ibrahim, Demir, Selim, Misir, Sema, Kilinc, Kagan, Mentese, Ahmet, Aliyazicioglu, Yuksel, and Deger, Orhan
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PROPOLIS , *BEE products , *PROSTATE cancer , *CELL lines , *FLAVONOIDS , *POLYPHENOLS - Abstract
Purpose: To investigate the total polyphenolic and flavonoid contents, antioxidant power and cytotoxic activity of ethanol extracts of Turkish propolis (EEP). Methods: The total polyphenolic and flavonoid contents of EEP were determined by spectrometric methods. Antioxidant power and cytotoxic activity of EEP were evaluated using ferric reducing antioxidant power (FRAP) and MTT assays, respectively. Results: The total polyphenolic and flavonoid contents, and FRAP value of EEP were 124.6 ± 1.5 mg gallic acid/g sample dry weight, 42.0 ± 0.8 mg quercetin/g sample dry weight and 311.0 ± 2.5 mg trolox/g sample dry weight, respectively. EEP exhibited powerful cytotoxic effects against the five human cancer cell lines. The highest cytotoxic activity of Turkish EEP was demonstrated on PC-3 cell line (IC50 = 20.7±3.4 μg/mL). Conclusion: The results demonstrate that EEP is a good source of antioxidant and a natural antitumor agent capable of reducing cancer cell proliferation. [ABSTRACT FROM AUTHOR]
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- 2015
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21. Cytotoxic effect of Rosa canina extract on human colon cancer cells through repression of telomerase expression
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Ibrahim Turan, Ahmet Mentese, Serap Ozer Yaman, Kagan Kilinc, Berna Genc, Hanife Kara, Selim Demir, Orhan Deger, Sema Misir, Yuksel Aliyazicioglu, [Turan, Ibrahim -- Kilinc, Kagan -- Genc, Berna] Gumushane Univ, Fac Engn & Nat Sci, Dept Genet & Bioengn, TR-29100 Gumushane, Turkey -- [Turan, Ibrahim] Gumushane Univ, Med Plants Tradit Med Practice & Res Ctr, TR-29100 Gumushane, Turkey -- [Demir, Selim] Karadeniz Tech Univ, Fac Hlth Sci, Dept Nutr & Dietet, TR-61080 Trabzon, Turkey -- [Yaman, Serap Ozer -- Misir, Sema -- Kara, Hanife -- Aliyazicioglu, Yuksel -- Deger, Orhan] Karadeniz Tech Univ, Fac Med, Dept Med Biochem, TR-61080 Trabzon, Turkey -- [Misir, Sema] Cumhuriyet Univ, Fac Pharm, Dept Biochem, TR-58140 Sivas, Turkey -- [Mentese, Ahmet] Karadeniz Tech Univ, Vocat Sch Hlth Sci, Program Med Lab Tech, TR-61080 Trabzon, Turkey, and Demir, Selim -- 0000-0002-1863-6280
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0301 basic medicine ,Telomerase ,Cell cycle checkpoint ,Cytotoxicity ,Pharmaceutical Science ,Apoptosis ,Pharmacy ,Analytical Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,Electrochemistry ,Cytotoxic T cell ,MTT assay ,Rosa canina ,Viability assay ,Spectroscopy ,biology ,Chemistry ,lcsh:RM1-950 ,Cell cycle ,biology.organism_classification ,Molecular biology ,Colon cancer ,030104 developmental biology ,lcsh:Therapeutics. Pharmacology ,030220 oncology & carcinogenesis ,Original Article - Abstract
WOS: 000451243800007, PubMed ID: 30595946, Rosa canina is a member of the genus Rosa that has long been used for medical objectives. Several studies have reported cytotoxic effects of different Rosa species, but there has been only limited investigation of the cytotoxic effect of R. canina. The purpose of the current study was to examine the potential effect of R. canina extract on cell viability, the cell cycle, apoptosis, and the expression of telomerase in human colon cancer (WiDr) cells. The cytotoxic effect of the extract was determined using MIT assay. The mechanism involved in the cytotoxic effect of the extract was then evaluated in terms of apoptosis and the cell cycle using flow cytometry. Mitochondrial membrane potential (MMP) was investigated using the fluorometric method, and expression levels of telomerase were studied using RT-PCR. R. canina extract exhibited a selective cytotoxic effect on WiDr cells compared with normal colon cells. The extract induced cell cycle arrest at the S phase and apoptosis via reduced MMP in WiDr cells. R. canina extract significantly repressed telomerase expressions at treatment times of 48 and 72 h in WiDr cells. Our results suggest that R. canina may have considerable potential for development as a novel natural product-based anticancer agent. (C) 2018 Xi'an Jiaotong University. Production and hosting by Elsevier B.V., Foundation of Scientific Research of Gumushane University [13.F5119.02.1], The authors would like to thank the Foundation of Scientific Research of Gumushane University for financially supporting this research under Project No: 13.F5119.02.1. The authors also wish to thank Professor Ersan Kalay from the Medical Biology Department, Karadeniz Technical University for professional assistance with the flow cytometry studies.
- Published
- 2018
22. Selective Cytotoxic Effect of Dorycnium pentaphyllum Extract on Human Breast, Liver, and Lung Cancer Cells
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Demir, Selim, Turan, İbrahim, Mısır, Sema, Aliyazıcıoğlu, Yüksel, [Demir, Selim] Karadeniz Tech Univ, Dept Nutr & Dietet, Fac Hlth Sci, TR-61080 Trabzon, Turkey -- [Turan, Ibrahim] Gumushane Univ, Fac Engn & Nat Sci, Dept Genet & Bioengn, TR-29100 Gumushane, Turkey -- [Misir, Sema] Sivas Cumhuriyet Univ, Dept Biochem, Fac Pharm, TR-58100 Sivas, Turkey -- [Aliyazicioglu, Yuksel] Karadeniz Tech Univ, Dept Med Biochem, Fac Med, TR-61080 Trabzon, Turkey, and [Belirlenecek]
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Fen ,Antioxidant activity ,Science ,Cytotoxicity ,Dorycnium pentaphyllum ,[No Keywords] ,Fabaceae ,Antioksidan aktivite,Dorycnium pentaphyllum,Fabaceae,Kanser,Sitotoksisite ,Antioxidant activity,Cancer,Cytotoxicity,Dorycnium pentaphyllum,Fabaceae ,Cancer - Abstract
Although some studies have evaluated thecytotoxic activity of different Fabaceaespecies, there has been only limited research into the cytotoxic effect of Dorycnium pentaphyllum. The purpose of this study wasto determine the antioxidant properties and cytotoxic effect of D. pentaphyllum extract on various humancancer cells. The total phenolic content (TPC) of the extract was determinedusing colorimetric method. The cytotoxic effect of the extract on human lung(A549), liver (HepG2), and breast (MCF-7) cancer cells and a normal humanfibroblast cells was assessed using the MTT assay. TPC value of extract wasfound as 140.3±1.1 mg gallic acid equivalent per g sample. Extract showedselective cytotoxicity on all studied cancer cells compared to normalfibroblast cells, and the IC50 values of the extract in the cancercells range from 100.4 to 298.5 μg/mL. This is the first study to reveal thecytotoxic effect of D. pentaphyllumextract on cancer cell lines. Phytomedical applications of D. pentaphyllum may represent promising approaches in the treatmentof cancer., Fabaceaeailesine mensup bitkilerin sitotoksik etkilerini konu alan bazı çalışmalarbulunmakla birlikte, Dorycnium pentaphyllum'unsitotoksik etkisi ile ilgili sınırlı araştırma bulunmaktadır. Bu çalışmanınamacı, D. pentaphyllum ekstraktının antioksidanözelliklerinin ve çeşitli insan kanser hücreleri üzerindeki sitotoksik etkisinibelirlenmesidir. Ekstraktın toplam fenolik içeriği kolorimetrik yöntemkullanılarak belirlendi. Ekstraktın insan akciğer (A549), karaciğer (HepG2) vememe (MCF-7) kanser hücreleri ile normal insan fibroblast hücreleri üzerindekisitotoksik etkisi MTT analizi kullanılarak değerlendirildi. Ekstraktın toplamfenolik içerikdeğerig örnekbaşına 140.3±1.1 mg gallik asit eşdeğeriolarak bulundu. Ekstraktın çalışılan tümkanser hücreserileri üzerindenormal fibroblast hücrelerine göre seçicisitotoksik etki gösterdiği belirlendi ve IC50değerleri100.4-298.5 μg/mL arasında hesaplandı. Bu çalışma D. pentaphyllum ekstraktının kanser hücre serileri üzerindeki sitotoksiketkisini ortaya koyan ilk çalışmadır. D.pentaphyllum'un fitokimyasal uygulamaları kanser tedavisinde umut vericiyaklaşımları temsil edebilir.
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- 2019
23. Morus rubra Extract Induces G(1) Cell Cycle Arrest and Apoptosis in Human Lung and Prostate Cancer Cells
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Kübra Akbulut, Serap Ozer Yaman, Sema Misir, Ibrahim Turan, Kagan Kilinc, Yuksel Aliyazicioglu, Ahmet Alver, Orhan Deger, Ahmet Mentese, Selim Demir, [Turan, Ibrahim -- Kilinc, Kagan] Gumushane Univ, Fac Engn & Nat Sci, Dept Genet & Bioengn, TR-29100 Gumushane, Turkey -- [Turan, Ibrahim] Gumushane Univ, Tradit Med Practice & Res Ctr, Med Plants, TR-29100 Gumushane, Turkey -- [Demir, Selim] Karadeniz Tech Univ, Fac Hlth Sci, Dept Nutr & Dietet, TR-61080 Trabzon, Turkey -- [Aliyazicioglu, Yuksel -- Alver, Ahmet -- Misir, Sema -- Yaman, Serap Ozer -- Akbulut, Kubra -- Deger, Orhan] Karadeniz Tech Univ, Fac Med, Dept Med Biochem, TR-61080 Trabzon, Turkey -- [Misir, Sema] Cumhuriyet Univ, Fac Pharm, Dept Biochem, TR-58140 Sivas, Turkey -- [Mentese, Ahmet] Karadeniz Tech Univ, Vocat Sch Hlth Sci, Program Med Lab Tech, TR-61080 Trabzon, Turkey, and Demir, Selim -- 0000-0002-1863-6280
- Subjects
Morus rubra ,Cell cycle checkpoint ,Lung Neoplasms ,Cytotoxicity ,Apoptosis ,Biology ,Prostate Neoplasms ,01 natural sciences ,Human lung ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,food ,Botany ,medicine ,General Pharmacology, Toxicology and Pharmaceutics ,010401 analytical chemistry ,Cell Cycle ,medicine.disease ,food.food ,0104 chemical sciences ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research - Abstract
WOS: 000403167900007, Objective: Cancer is one of the most deadly types of disease and evasion from apoptosis and unstoppable cell proliferation are accepted as its distinctive features. Many studies have evaluated the cytotoxic effect of different Morus species but, there is no study about cytotoxic effect of Morus rubra. In this study we aimed to evaluate phenolic composition, antioxidant properties and cytotoxic effect of acidified dimethyl sulfoxide extract of M. rubra (AMRE). Method: Antioxidant properties, phenolic composition and cytotoxic effect of AMRE were determined using spectrophotometric methods, HPLC, and MTT assay, respectively. Then, mechanisms of cytotoxic effect of AMRE on human prostate (PC-3) and lung (A549) cancer cells were examined in regard to cell cycle, apoptosis and mitochondrial membrane potential using flow cytometric methods. Results: Total phenolic content and reducing power values were 11.9 mg gallic acid equivalents and 42.9 mg trolox equivalents per g sample, respectively. Ascorbic and gallic acid were detected in AMRE as major antioxidant compounds. We determined that AMRE increased cell cycle arrest at G(1) phase and exhibited apoptotic features via decreasing mitochondrial membrane potential in both prostate and lung cancer cells. Conclusion: These findings demonstrate that M. rubra extract can affect the behavior of human prostate and lung cancer cells in vitro conditions, and this effect now needs to be investigated in vivo.
- Published
- 2017
24. Phenolic Characterisation and Antioxidant Activity of Primula vulgaris and Its Antigenotoxic Effect on Fibroblast Cells
- Author
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Rezzan Aliyazicioglu, Sermet Yildirmis, Yuksel Aliyazicioglu, Mehtap Tugce Ozkan, Sema Misir, Ibrahim Turan, Selim Demir, [Ozkan, Mehtap Tugce -- Aliyazicioglu, Rezzan -- Yildirmis, Sermet] Karadeniz Tech Univ, Dept Biochem, Fac Pharm, TR-61080 Trabzon, Turkey -- [Demir, Selim] Karadeniz Tech Univ, Dept Nutr & Dietet, Fac Hlth Sci, TR-61080 Trabzon, Turkey -- [Misir, Sema] Karadeniz Tech Univ, Inst Hlth Sci, Dept Med Biochem, TR-61080 Trabzon, Turkey -- [Misir, Sema] Cumhuriyet Univ, Dept Biochem, Fac Pharm, TR-58140 Sivas, Turkey -- [Turan, Ibrahim] Gumushane Univ, Fac Engn & Nat Sci, Dept Genet & Bioengn, TR-29100 Gumushane, Turkey -- [Turan, Ibrahim] Gumushane Univ, Med Plants Tradit Med Practice & Res Ctr, TR-29100 Gumushane, Turkey -- [Aliyazicioglu, Yuksel] Karadeniz Tech Univ, Dept Med Biochem, Fac Med, TR-61080 Trabzon, Turkey, and Demir, Selim -- 0000-0002-1863-6280
- Subjects
0301 basic medicine ,Primula vulgaris ,Antioxidant ,medicine.medical_treatment ,030106 microbiology ,High-performance liquid chromatography ,03 medical and health sciences ,Rutin ,chemistry.chemical_compound ,0302 clinical medicine ,Botany ,medicine ,Food science ,Gallic acid ,General Pharmacology, Toxicology and Pharmaceutics ,Antioxidant Effect ,biology ,Antigenotoxicity ,biology.organism_classification ,Comet assay ,030104 developmental biology ,chemistry ,Polyphenol ,030220 oncology & carcinogenesis ,Comet Assay ,Trolox ,HPLC ,030217 neurology & neurosurgery ,DNA Damage - Abstract
WOS: 000419309900011, Background: Primula vulgaris has been used in traditional treatment, and its biological functions are attributed to its polyphenolics content. Objectives: The aim of this study was to determine the phenolics composition and the antioxidant activity of water extract of P. vulgaris (WEP) and to determine its probable preventive effects against H2O2-induced DNA damage in human fibroblast cells. Methods: The total polyphenolic content (TPC), ferric reducing antioxidant power (FRAP), and radical scavenging activity of WEP were determined using spectrophotometric methods. Phenolic compounds and antigenotoxic effects of WEP were evaluated using HPLC and comet assay, respectively. Results: The TPC and FRAP values of WEP were 15.023 +/- 0.84 mg gallic acid and 82.63 +/- 0.31 mu M trolox per g sample, respectively. rho-coumaric acid and rutin were detected as major phenolics. Moreover, WEP reduced H2O2-induced DNA damage in a concentration dependent manner in fibroblast cells compared to the positive controls (only 20 mu M H2O2 treatment). Conclusions: Primula vulgaris can be used in food, cosmetics, and drug industries because of its antioxidant and antigenotoxic activities., Foundation of Scientific Research of Karadeniz Technical University, The authors thank Dr. Huseyin Sahin (Giresun University) for his assistance with HPLC analysis. This work was supported by Foundation of Scientific Research of Karadeniz Technical University.
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- 2016
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25. Cytotoxic Effect of Turkish Propolis on Liver, Colon, Breast, Cervix and Prostate Cancer Cell Lines
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Yuksel Aliyazicioglu, Ibrahim Turan, Ahmet Mentese, Orhan Deger, Kagan Kilinc, Selim Demir, Sema Misir, [Turan, Ibrahim -- Kilinc, Kagan] Gumushane Univ, Fac Engn & Nat Sci, Dept Genet & Bioengn, TR-29100 Gumushane, Turkey -- [Turan, Ibrahim] Gumushane Univ, Med Plants Tradit Med Practice & Res Ctr, TR-29100 Gumushane, Turkey -- [Demir, Selim -- Misir, Sema] Karadeniz Tech Univ, Inst Hlth Sci, Dept Med Biochem, TR-61080 Trabzon, Turkey -- [Misir, Sema] Cumhuriyet Univ, Fac Pharm, Dept Biochem, TR-58140 Sivas, Turkey -- [Mentese, Ahmet -- Aliyazicioglu, Yuksel -- Deger, Orhan] Karadeniz Tech Univ, Fac Med, Dept Med Biochem, TR-61080 Trabzon, Turkey, Demir, Selim -- 0000-0002-1863-6280, and [Belirlenecek]
- Subjects
chemistry.chemical_classification ,Antioxidant ,Traditional medicine ,medicine.medical_treatment ,Cytotoxic effect ,Flavonoid ,Cancer cell lines ,[No Keywords] ,food and beverages ,Pharmaceutical Science ,Polyphenols ,Propolis ,Propolis, Polyphenols, Cytotoxic effect, Cancer cell lines, Antioxidant activity ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Antioxidant activity ,Polyphenol ,medicine ,Pharmacology (medical) ,Trolox ,Gallic acid ,Quercetin ,IC50 - Abstract
WOS: 000355931400005, Purpose: To investigate the total polyphenolic and flavonoid contents, antioxidant power and cytotoxic activity of ethanol extracts of Turkish propolis (EEP). Methods: The total polyphenolic and flavonoid contents of EEP were determined by spectrometric methods. Antioxidant power and cytotoxic activity of EEP were evaluated using ferric reducing antioxidant power (FRAP) and MTT assays, respectively. Results: The total polyphenolic and flavonoid contents, and FRAP value of EEP were 124.6 +/- 1.5 mg gallic acid/g sample dry weight, 42.0 +/- 0.8 mg quercetin/g sample dry weight and 311.0 +/- 2.5 mg trolox/g sample dry weight, respectively. EEP exhibited powerful cytotoxic effects against the five human cancer cell lines. The highest cytotoxic activity of Turkish EEP was demonstrated on PC-3 cell line (IC50 = 20.7 +/- 3.4 mu g/mL). Conclusion: The results demonstrate that EEP is a good source of antioxidant and a natural antitumor agent capable of reducing cancer cell proliferation., Foundation of Scientific Research of Karadeniz Technical University, Trabzon, Turkey [2007.114.001.3, 2008.114.001.5], This work was supported by Foundation of Scientific Research of Karadeniz Technical University (Project numbers: 2007.114.001.3 and 2008.114.001.5), Trabzon, Turkey.
- Published
- 2015
26. Identification of a Novel hsa_circ_0058058/miR-324-5p Axis and Prognostic/Predictive Molecules for Acute Myeloid Leukemia Outcome by Bioinformatics-Based Analysis.
- Author
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Misir S, Ozer Yaman S, Petrović N, Šami A, Akidan O, Hepokur C, and Aliyazicioglu Y
- Abstract
Acute myeloid leukemia (LAML) is one of the most prevalent hematological malignancies. In recent years, while targeted approaches have shown promise in the fight against cancer, the treatability and prognosis of patients remain inadequate due to the shortage of drugs. Noncoding RNAs, especially circular RNA (circRNA) and microRNA (miRNA), have been shown to play a unique role in tumor development. This study aims to identify the disease-associated circRNA-miRNA-mRNA network by bioinformatic analysis and investigate the mechanisms in the development and progression of LAML. Additionally, it reveals the promising roles of these molecules as a diagnostic biomarker and therapeutic target for LAML treatment. Using various bioinformatics approaches, we identified the hsa_circ_0058058/miR-324-5p axis in LAML and its possible functions in LAML development. According to our results, hsa circ-0058058 can regulate the expression of AP1G1 and SP1 through miR-324-5p to support angiogenesis, the cell cycle, and DNA replication processes. Downregulation of hsa circ-0058058 may contribute to the anticancer functions of miR-324-5p on LAML tumorigenesis, and upregulation of miR-324-5p can abolish the oncogenic effects of AP1G1 and SP1 on LAML tumorigenesis. Additionally, highly enriched pathways indicated possible interactions between molecules underlying LAML pathology. Targeted molecules within this network may be able to function as therapeutic and diagnostic biomarkers for disease, while more research and clinical confirmation are needed.
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- 2024
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27. circRNAs in drug resistance of breast cancer.
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Misir S, Yaman SO, Petrović N, Sumer C, Hepokur C, and Aliyazicioglu Y
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- Female, Humans, RNA, Circular genetics, Doxorubicin, Tamoxifen, Drug Resistance, Neoplasm genetics, Breast Neoplasms drug therapy, Breast Neoplasms genetics
- Abstract
Breast cancer (BC) is the most common heterogeneous disease in women and one of the leading causes of cancer-related death. Surgery, chemotherapy, radiotherapy, hormone, and targeted therapy are the gold standards for BC treatment. One of the significant challenges during the treatment of BC represents resistance to chemotherapeutics, resistance that severely limits the use and effectiveness of the drugs used for BC treatment. Therefore, it is essential to develop new strategies to improve therapeutic efficacy. Circular RNAs (circRNAs) are a large group of non-coding RNAs that covalently form closed circular loops by joining their 5', and 3'; ends. Accumulating evidence suggests that circRNAs have a vital role in cancer development, progression, and BC resistance to chemotherapy. The purpose of this review is to discuss the biological properties of circRNAs, and how circRNAs induce resistance to conventional therapeutic anti-cancer drugs used in BC treatment, by emphasizing and summarizing the potential roles of circRNAs in mechanisms of drug resistance, such as drug efflux, apoptosis dysfunction, autophagy, and DNA damage repair. CircRNAs are associated with drug resistance via ATP-binding cassette (ABC) efflux transporters, while some others by inhibition of cell apoptosis, thus leading to resistance to tamoxifen in BC cells. In contrast, others are involved in the promotion of BC cells chemoresistance by doxorubicin-induced autophagy. CircRNAs may have clinical significance in regulating or overcoming BC drug resistance and may give directions towards a novel approach to personalized BC treatment. CircRNAs may significantly contribute to the identification of new therapeutic targets for the prevention of BC chemoresistance., Competing Interests: The authors declare that they have no conflicts of interest to report regarding the present study., (© 2022 Misir et al.)
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- 2023
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28. Selective cytotoxic effect of Rhododendron luteum extract on human colon and liver cancer cells.
- Author
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Demir S, Turan I, and Aliyazicioglu Y
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- Antioxidants metabolism, Cell Line, Tumor, Colonic Neoplasms metabolism, Flavonoids pharmacology, Flowers chemistry, Hep G2 Cells, Humans, Liver Neoplasms metabolism, MCF-7 Cells, Phenols pharmacology, Colonic Neoplasms drug therapy, Liver Neoplasms drug therapy, Plant Extracts pharmacology, Rhododendron chemistry
- Abstract
Purpose: The genus Rhododendron is distributed entirely in the world with the exception of South and Central America and Africa, growing in a large diversity of climatic conditions. This genus is a rich source of phenolic compounds, especially flavonoids, essential oils, chromones, terpenoids, and steroids. It has many biological properties such as antioxidant, anti-inflammatory, antiviral, antibacterial, anticancer, antidiabetic, immunomodulatory, cardioprotective and hepatoprotective among others due to their polyphenolic constituents. The objective of the current study was to evaluate the antioxidant properties and cytotoxic activity of dimethyl sulfoxide extract of flowers of Rhododendron luteum (DEFR) for the first time., Methods: The total polyphenolic contents (TPC), total flavonoid contents (TFC) and ferric reducing antioxidant power (FRAP) of the extract were evaluated using spectrophotometric procedures. The cytotoxic activity of the extract on three cancers (human breast, colon and liver carcinoma) and human foreskin fibroblast cells was determined using the MTT assay., Results: TPC and FRAP values were found 54.2±0.38 mg gallic acid equivalents and 164.2±1.77 mg trolox equivalents per to g sample, respectively. R.luteum extract exhibited selective cytotoxicity against colon and liver cancer cells compared to normal fibroblast cells, while this selective cytotoxicity was not observed in breast cancer cells., Conclusion: Our results demonstrate that the Rhododendron luteum may be a great source of antioxidant and antitumor natural agents due to their capability of decreasing cancer cells proliferation.
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- 2016
29. Hepatoid adenocarcinoma of the stomach: report of five cases and review of the literature.
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Bakir T, Aliyazicioglu Y, Bektas A, Siviloglu C, and Ozgur O
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- Adenocarcinoma blood, Adenocarcinoma surgery, Adult, Aged, Biomarkers, Tumor blood, Fatal Outcome, Female, Gastrectomy, Humans, Liver Neoplasms blood, Liver Neoplasms secondary, Lymphatic Metastasis, Male, Neoplasm Staging, Pyloric Antrum metabolism, Pyloric Antrum pathology, Stomach Neoplasms blood, Stomach Neoplasms surgery, alpha-Fetoproteins metabolism, Adenocarcinoma secondary, Stomach Neoplasms pathology
- Abstract
We report on a rare hepatoid adenocarcinoma of the stomach producing alpha-fetoprotein (AFP) in five cases. Definitive features included an aggressive, invasive, and rapidly progressing neoplasm showing areas morphologically comparable to those of hepatocellular carcinomas. All patients had multiple metastases to lymph nodes and/or liver. The serum AFP level of the patients was between 83-87.900 ng/ml. Two subtotal and one palliative gastrectomy was performed. A short duration of chemotherapy was administered only in two patients. The length of survival averaged 4.7 months. Our experience together with what has been reported in literature suggest that the course of hepatoid adenocarcinoma of the stomach is more aggressive than an ordinary adenocarcinoma and that from a diagnostic point of view distinction from an adenocarcinoma may be accomplished histochemically and by measuring serum AFP levels.
- Published
- 2006
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