23,144 results on '"Auerbach A"'
Search Results
2. Occupational post-exposure prophylaxis among healthcare workers: a scoping review of factors affecting optimal utilization.
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Auerbach, Judith, Malone, Siobhan, and Forsyth, Andrew
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HIV prevention ,LMIC ,PEP ,healthcare workers ,occupational exposure ,post‐exposure prophylaxis ,Humans ,Post-Exposure Prophylaxis ,Health Personnel ,HIV Infections ,Occupational Exposure ,Africa ,Anti-HIV Agents ,Asia - Abstract
INTRODUCTION: Post-exposure prophylaxis (PEP) is an efficacious prevention method when initiated promptly after an HIV exposure. Yet, PEP has been underutilized, even among healthcare workers (HCWs) with occupational exposure in sites with PEP policies and procedures and access to PEP medications. It is important to understand the dynamics of uneven PEP use in what appears to be an optimal context to better protect the health and wellbeing of HCWs. METHODS: We conducted a scoping review to elucidate factors influencing HCWs use of PEP after occupational exposure. We searched PubMed, PsychInfo and Google Scholar for peer-reviewed literature published in English from 2014 to 2022 using the terms HIV, postexposure/post-exposure prophylaxis, acceptability, healthcare workers, and values and preferences. An inductive narrative review of the resulting 53 studies identified core themes. RESULTS: Nearly all studies (96%) with various HCW types and settings occurred in low- and middle-income countries (LMICs) in Africa and Asia. Identified themes arrayed along a trajectory of PEP use experience: awareness/knowledge; acceptability; availability/access; uptake/use; adherence/completion. Across studies, awareness of PEP for HIV prevention was high, knowledge about drug regimens and healthcare facility policies was moderate to low; acceptability of PEP was moderate to high; PEPs perceived accessibility/availability was inconsistent and varied by geographic location and setting; HCWs uptake of PEP was low, affected by not knowing how to report an exposure and being unaware of PEP availability; and adherence/completion of PEP regimens was moderate to low, impeded by side effects and a belief that completing regimens was unnecessary to avert seroconversion. HCWs consistently expressed concern about HIV stigma. DISCUSSION: Findings are limited by the inconsistent use of constructs across studies and a lack of clarity about reporting exposure events. Multi-level approaches are needed to address the interplay of individual, social and structural barriers that diminish HCWs PEP use. Improved training, incident reporting, 24-hour access to non-stigmatizing PEP services and monitoring of adherence/completion are essential to optimizing HCWs PEP use. CONCLUSIONS: Lessons from HCWs experience in LMICs may inform understanding of PEP under-use among people in these settings with non-occupational exposures.
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- 2024
3. In Memoriam: Natale A. Zappia, 1974–2023
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Auerbach, Jeffrey and Madley, Benjamin
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Reprint. Originally appeared in Perspectives on History, vol. 61, no. 8(November 2023).
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- 2024
4. Quantum Transport Theory of Strongly Correlated Matter
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Auerbach, Assa and Bhattacharyya, Sauri
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
This report reviews recent progress in computing Kubo formulas for general interacting Hamiltonians. The aim is to calculate electric and thermal magneto-conductivities in strong scattering regimes where Boltzmann equation and Hall conductivity proxies exceed their validity. Three primary approaches are explained. 1. Degeneracy-projected polarization formulas for Hall-type conductivities, which substantially reduce the number of calculated current matrix elements. These expressions generalize the Berry curvature integral formulas to imperfect lattices. 2. Continued fraction representation of dynamical longitudinal conductivities. The calculations produce a set of thermodynamic averages, which can be controllably extrapolated using their mathematical relations to low and high frequency conductivity asymptotics. 3. Hall-type coefficients summation formulas, which are constructed from thermodynamic averages. The thermodynamic formulas are derived in the operator Hilbert space formalism, which avoids the opacity and high computational cost of the Hamiltonian eigenspectrum. The coefficients can be obtained by well established imaginary-time Monte Carlo sampling, high temperature expansion, traces of operator products, and variational wavefunctions at low temperatures. We demonstrate the power of approaches 1--3 by their application to well known models of lattice electrons and bosons. The calculations clarify the far-reaching influence of strong local interactions on the metallic transport near Mott insulators. Future directions for these approaches are discussed., Comment: 81 pages, 32 figures, 144 references
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- 2024
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5. Estimating the Number of Street Vendors in New York City
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Auerbach, Jonathan
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Statistics - Applications - Abstract
We estimate the number of street vendors in New York City. First, we summarize the process by which vendors receive licenses and permits to operate legally in New York City. Second, we describe a survey that was administered by the Street Vendor Project while distributing Coronavirus relief aid to vendors operating in New York City both with and without a license or permit. Third, we review ratio estimation and provide a theoretical justification based on the theory of point processes. Fourth, we use ratio estimation to calculate the total number of vendors, finding approximately 23,000 street vendors operate in New York City (20,500 mobile food vendors and 2,400 general merchandise vendors) with one third located in just six ZIP Codes (11368 (16%), 11372 (3%), and 11354 (3%) in North and West Queens and 10036 (5%), 10019 (4%), and 10001 (3%) in the Chelsea and Clinton neighborhoods of Manhattan). Finally, we evaluate the accuracy of the ratio estimator when the distribution of vendors is explained by a Poisson or Yule process, and we discuss several policy implications. In particular, our estimates suggest the American Community Survey misses the majority of New York City street vendors.
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- 2024
6. Testing the Fairness-Accuracy Improvability of Algorithms
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Auerbach, Eric, Liang, Annie, Okumura, Kyohei, and Tabord-Meehan, Max
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Economics - Econometrics ,Computer Science - Data Structures and Algorithms ,Statistics - Applications - Abstract
Many organizations use algorithms that have a disparate impact, i.e., the benefits or harms of the algorithm fall disproportionately on certain social groups. Addressing an algorithm's disparate impact can be challenging, however, because it is often unclear whether it is possible to reduce this impact without sacrificing other objectives of the organization, such as accuracy or profit. Establishing the improvability of algorithms with respect to multiple criteria is of both conceptual and practical interest: in many settings, disparate impact that would otherwise be prohibited under US federal law is permissible if it is necessary to achieve a legitimate business interest. The question is how a policy-maker can formally substantiate, or refute, this "necessity" defense. In this paper, we provide an econometric framework for testing the hypothesis that it is possible to improve on the fairness of an algorithm without compromising on other pre-specified objectives. Our proposed test is simple to implement and can be applied under any exogenous constraint on the algorithm space. We establish the large-sample validity and consistency of our test, and illustrate its practical application by evaluating a healthcare algorithm originally considered by Obermeyer et al. (2019). In this application, we reject the null hypothesis that it is not possible to reduce the algorithm's disparate impact without compromising the accuracy of its predictions.
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- 2024
7. Regression Discontinuity Design with Spillovers
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Auerbach, Eric, Cai, Yong, and Rafi, Ahnaf
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Economics - Econometrics - Abstract
Researchers who estimate treatment effects using a regression discontinuity design (RDD) typically assume that there are no spillovers between the treated and control units. This may be unrealistic. We characterize the estimand of RDD in a setting where spillovers occur between units that are close in their values of the running variable. Under the assumption that spillovers are linear-in-means, we show that the estimand depends on the ratio of two terms: (1) the radius over which spillovers occur and (2) the choice of bandwidth used for the local linear regression. Specifically, RDD estimates direct treatment effect when radius is of larger order than the bandwidth, and total treatment effect when radius is of smaller order than the bandwidth. In the more realistic regime where radius is of similar order as the bandwidth, the RDD estimand is a mix of the above effects. To recover direct and spillover effects, we propose incorporating estimated spillover terms into local linear regression -- the local analog of peer effects regression. We also clarify the settings under which the donut-hole RD is able to eliminate the effects of spillovers.
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- 2024
8. Autonomous Driving Small-Scale Cars: A Survey of Recent Development
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Li, Dianzhao, Auerbach, Paul, and Okhrin, Ostap
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Computer Science - Robotics ,Computer Science - Artificial Intelligence - Abstract
While engaging with the unfolding revolution in autonomous driving, a challenge presents itself, how can we effectively raise awareness within society about this transformative trend? While full-scale autonomous driving vehicles often come with a hefty price tag, the emergence of small-scale car platforms offers a compelling alternative. These platforms not only serve as valuable educational tools for the broader public and young generations but also function as robust research platforms, contributing significantly to the ongoing advancements in autonomous driving technology. This survey outlines various small-scale car platforms, categorizing them and detailing the research advancements accomplished through their usage. The conclusion provides proposals for promising future directions in the field.
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- 2024
9. Landscape of nuclear deformation softness with spherical quasi-particle random phase approximation
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Nguyen, Le-Anh, Bui, Minh-Loc, Papakonstantinou, Panagiota, and Auerbach, Naftali
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Nuclear Theory ,Nuclear Experiment - Abstract
We investigate the stability and softness of nuclei against quadrupole, octupole, and hexadecapole deformation. By applying the spherical Skyrme-force Hartree-Fock Bardeen-Cooper-Schrieffer quasi-particle random phase approximation, we diagnose ground-state deformation when imaginary solutions are obtained, i.e., the spherical ground state {\em collapses}. We also calculate the multipole polarizability in spherical nuclei with no collapse, as a measure of softness. This numerically light and theoretically sound method is found able to capture deformation patterns across the nuclide chart. The connection between the intrinsic shape of nuclei and the dynamics of their low-lying collective states is established and the role of shell structure is discussed., Comment: 8 pages, 8 figures, accepted for publication in Physical Review C
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- 2024
10. Analysis of Clinical Criteria for Discharge Among Patients Hospitalized for COVID-19: Development and Validation of a Risk Prediction Model.
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Schnipper, Jeffrey, Oreper, Sandra, Hubbard, Colin, Kurbegov, Dax, Egloff, Shanna, Najafi, Nader, Valdes, Gilmer, Siddiqui, Zishan, O Leary, Kevin, Horwitz, Leora, Lee, Tiffany, and Auerbach, Andrew
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COVID-19 ,hospital readmission ,risk assessment - Abstract
BACKGROUND: Patients hospitalized with COVID-19 can clinically deteriorate after a period of initial stability, making optimal timing of discharge a clinical and operational challenge. OBJECTIVE: To determine risks for post-discharge readmission and death among patients hospitalized with COVID-19. DESIGN: Multicenter retrospective observational cohort study, 2020-2021, with 30-day follow-up. PARTICIPANTS: Adults admitted for care of COVID-19 respiratory disease between March 2, 2020, and February 11, 2021, to one of 180 US hospitals affiliated with the HCA Healthcare system. MAIN MEASURES: Readmission to or death at an HCA hospital within 30 days of discharge was assessed. The area under the receiver operating characteristic curve (AUC) was calculated using an internal validation set (33% of the HCA cohort), and external validation was performed using similar data from six academic centers associated with a hospital medicine research network (HOMERuN). KEY RESULTS: The final HCA cohort included 62,195 patients (mean age 61.9 years, 51.9% male), of whom 4704 (7.6%) were readmitted or died within 30 days of discharge. Independent risk factors for death or readmission included fever within 72 h of discharge; tachypnea, tachycardia, or lack of improvement in oxygen requirement in the last 24 h; lymphopenia or thrombocytopenia at the time of discharge; being ≤ 7 days since first positive test for SARS-CoV-2; HOSPITAL readmission risk score ≥ 5; and several comorbidities. Inpatient treatment with remdesivir or anticoagulation were associated with lower odds. The models AUC for the internal validation set was 0.73 (95% CI 0.71-0.74) and 0.66 (95% CI 0.64 to 0.67) for the external validation set. CONCLUSIONS: This large retrospective study identified several factors associated with post-discharge readmission or death in models which performed with good discrimination. Patients 7 or fewer days since test positivity and who demonstrate potentially reversible risk factors may benefit from delaying discharge until those risk factors resolve.
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- 2024
11. Sex concordance between physicians and patients and discharge opioid prescribing
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Rambachan, Aksharananda, Joshi, Mihir, Auerbach, Andrew D, and Fang, Margaret C
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Health Services and Systems ,Nursing ,Health Sciences ,Clinical Research ,Substance Misuse ,Chronic Pain ,Prescription Drug Abuse ,Pain Research ,Management of diseases and conditions ,7.3 Management and decision making ,Clinical Sciences ,General & Internal Medicine ,Health services and systems - Abstract
Inpatient pain management is challenging for clinicians and inequities are prevalent. We examined sex concordance between physicians and patients to determine if discordance was associated with disparate opioid prescribing on hospital discharge. We examined 15,339 hospitalizations from 2013 to 2021. Adjusting for patient, clinical, and hospitalization-level characteristics, we calculated the odds of a patient receiving an opioid on discharge and the days of opioids prescribed across all hospitalizations and for patients admitted with a common pain diagnosis. We did not find an overall association between physician-patient sex concordance and discharge opioid prescriptions. Compared to concordant sex pairs, patients in discordant pairs were not significantly less likely to receive an opioid prescription (odds ratio: 1.04; 95% confidence interval [CI]: 0.95, 1.15) and did not receive significantly fewer days of opioids (2.1 fewer days of opioids; 95% CI: -4.4, 0.4). Better understanding relationships between physician and patient characteristics is essential to achieve more equitable prescribing.
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- 2024
12. Unlocking the Potential of Clustering and Classification Approaches: Navigating Supervised and Unsupervised Chemical Similarity
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Mansouri, Kamel, Taylor, Kyla, Auerbach, Scott, Ferguson, Stephen, Frawley, Rachel, Hsieh, Jui-Hua, Jahnke, Gloria, Kleinstreuer, Nicole, Mehta, Suril, Moreira-Filho, Jose T., Parham, Fred, Rider, Cynthia, Rooney, Andrew A., Wang, Amy, and Sutherland, Vicki
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Data warehousing/data mining ,Algorithm ,Chemical structure -- Research ,Chemical research ,Machine learning -- Usage ,Data mining -- Methods ,Algorithms -- Usage - Abstract
BACKGROUND: The field of toxicology has witnessed substantial advancements in recent years, particularly with the adoption of new approach methodologies (NAMs) to understand and predict chemical toxicity. Class-based methods such as clustering and classification are key to NAMs development and application, aiding the understanding of hazard and risk concerns associated with groups of chemicals without additional laboratory work. Advances in computational chemistry, data generation and availability, and machine learning algorithms represent important opportunities for continued improvement of these techniques to optimize their utility for specific regulatory and research purposes. However, due to their intricacy, deep understanding and careful selection are imperative to align the adequate methods with their intended applications. OBJECTIVES: This commentary aims to deepen the understanding of class-based approaches by elucidating the pivotal role of chemical similarity (structural and biological) in clustering and classification approaches (CCAs). It addresses the dichotomy between general end point-agnostic similarity, often entailing unsupervised analysis, and end point-specific similarity necessitating supervised learning. The goal is to highlight the nuances of these approaches, their applications, and common misuses. DISCUSSION: Understanding similarity is pivotal in toxicological research involving CCAs. The effectiveness of these approaches depends on the right definition and measure of similarity, which varies based on context and objectives of the study. This choice is influenced by how chemical structures are represented and the respective labels indicating biological activity, if applicable. The distinction between unsupervised clustering and supervised classification methods is vital, requiring the use of end point-agnostic vs. end point-specific similarity definition. Separate use or combination of these methods requires careful consideration to prevent bias and ensure relevance for the goal of the study. Unsupervised methods use end pointagnostic similarity measures to uncover general structural patterns and relationships, aiding hypothesis generation and facilitating exploration of datasets without the need for predefined labels or explicit guidance. Conversely, supervised techniques demand end point-specific similarity to group chemicals into predefined classes or to train classification models, allowing accurate predictions for new chemicals. Misuse can arise when unsupervised methods are applied to end point-specific contexts, like analog selection in read-across, leading to erroneous conclusions. This commentary provides insights into the significance of similarity and its role in supervised classification and unsupervised clustering approaches. https://doi.org/10.1289/EHP14001, Introduction Chemical hazard and risk assessments aim to estimate toxicological outcomes and evaluate the potential risks that chemicals may pose to human health and the environment. However, studying chemicals one-by-one [...]
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- 2024
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13. Imaging de Haas-van Alphen quantum oscillations and milli-Tesla pseudomagnetic fields
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Zhou, Haibiao, Auerbach, Nadav, Uzan, Matan, Zhou, Yaozhang, Banu, Nasrin, Zhi, Weifeng, Huber, Martin E., Watanabe, Kenji, Taniguchi, Takashi, Myasoedov, Yuri, Yan, Binghai, and Zeldov, Eli
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
A unique attribute of atomically thin quantum materials is the in-situ tunability of their electronic band structure by externally controllable parameters like electrostatic doping, electric field, strain, electron interactions, and displacement or twisting of atomic layers. This unparalleled control of the electronic bands has led to the discovery of a plethora of exotic emergent phenomena. But despite its key role, there is currently no versatile method for mapping the local band structure in advanced 2D materials devices in which the active layer is commonly embedded in various insulating layers and metallic gates. Utilizing a scanning superconducting quantum interference device, we image the de Haas-van Alphen quantum oscillations in a model system, the Bernal-stacked trilayer graphene with dual gates, which displays multiple highly-tunable bands. By resolving thermodynamic quantum oscillations spanning over 100 Landau levels in low magnetic fields, we reconstruct the band structure and its controllable evolution with the displacement field with unprecedented precision and spatial resolution of 150 nm. Moreover, by developing Landau level interferometry, we reveal shear-strain-induced pseudomagnetic fields and map their spatial dependence. In contrast to artificially-induced large strain, which leads to pseudomagnetic fields of hundreds of Tesla, we detect naturally occurring pseudomagnetic fields as low as 1 mT corresponding to graphene twisting by just 1 millidegree over one {\mu}m distance, two orders of magnitude lower than the typical angle disorder in high-quality twisted bilayer graphene devices. This ability to resolve the local band structure and strain on the nanoscale opens the door to the characterization and utilization of tunable band engineering in practical van der Waals devices., Comment: Nature (2023)
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- 2023
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14. A Comparison Between In-Person and Video Conference Lectures on Medical Student Ultrasound Education
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Mitina, Alina, Auerbach, Alyssa, Cirilli, Angela, Kurkowski, Ellen, Yu, Connie, Davenport, Conor, and Beckett, David
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- 2024
15. Achievement of Target Gain Larger than Unity in an Inertial Fusion Experiment
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Abu-Shawareb, H, Acree, R, Adams, P, Adams, J, Addis, B, Aden, R, Adrian, P, Afeyan, BB, Aggleton, M, Aghaian, L, Aguirre, A, Aikens, D, Akre, J, Albert, F, Albrecht, M, Albright, BJ, Albritton, J, Alcala, J, Alday, C, Alessi, DA, Alexander, N, Alfonso, J, Alfonso, N, Alger, E, Ali, SJ, Ali, ZA, Allen, A, Alley, WE, Amala, P, Amendt, PA, Amick, P, Ammula, S, Amorin, C, Ampleford, DJ, Anderson, RW, Anklam, T, Antipa, N, Appelbe, B, Aracne-Ruddle, C, Araya, E, Archuleta, TN, Arend, M, Arnold, P, Arnold, T, Arsenlis, A, Asay, J, Atherton, LJ, Atkinson, D, Atkinson, R, Auerbach, JM, Austin, B, Auyang, L, Awwal, AAS, Aybar, N, Ayers, J, Ayers, S, Ayers, T, Azevedo, S, Bachmann, B, Back, CA, Bae, J, Bailey, DS, Bailey, J, Baisden, T, Baker, KL, Baldis, H, Barber, D, Barberis, M, Barker, D, Barnes, A, Barnes, CW, Barrios, MA, Barty, C, Bass, I, Batha, SH, Baxamusa, SH, Bazan, G, Beagle, JK, Beale, R, Beck, BR, Beck, JB, Bedzyk, M, Beeler, RG, Behrendt, W, Belk, L, Bell, P, Belyaev, M, Benage, JF, Bennett, G, Benedetti, LR, Benedict, LX, Berger, RL, Bernat, T, Bernstein, LA, Berry, B, Bertolini, L, Besenbruch, G, Betcher, J, and Bettenhausen, R
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Nuclear and Plasma Physics ,Physical Sciences ,Indirect Drive ICF Collaboration ,Mathematical Sciences ,Engineering ,General Physics ,Mathematical sciences ,Physical sciences - Abstract
On December 5, 2022, an indirect drive fusion implosion on the National Ignition Facility (NIF) achieved a target gain G_{target} of 1.5. This is the first laboratory demonstration of exceeding "scientific breakeven" (or G_{target}>1) where 2.05 MJ of 351 nm laser light produced 3.1 MJ of total fusion yield, a result which significantly exceeds the Lawson criterion for fusion ignition as reported in a previous NIF implosion [H. Abu-Shawareb et al. (Indirect Drive ICF Collaboration), Phys. Rev. Lett. 129, 075001 (2022)PRLTAO0031-900710.1103/PhysRevLett.129.075001]. This achievement is the culmination of more than five decades of research and gives proof that laboratory fusion, based on fundamental physics principles, is possible. This Letter reports on the target, laser, design, and experimental advancements that led to this result.
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- 2024
16. Bone metastasis manifested 52 years after resection of an apparently benign paraganglioma: A case report.
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Yu, Run, Auerbach, Martin, and Honda, Nathan
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Paraganglioma ,avulsion fracture ,late metachronous metastasis ,lesser trochanter - Abstract
Paraganglioma is derived from the paraganglia tissue in the neck, along the sympathetic trunk, and in the pelvis. Paraganglioma has malignant potential and can metastasize to remote organs such as the liver, lungs, and bones. Most metachronous metastases occur within several years after the initial diagnosis of paraganglioma. Here, we report the case of a 71-year-old male patient who developed bony metastasis 52 years after the resection of a large paraganglioma at the aortic bifurcation. The biopsy-proven paraganglioma metastasis to the lesser trochanter of left femur presented as an avulsion fracture. His normetanephrine level was elevated. DOTATATE PET (positron emission tomography) did not find any other metastatic lesions. The bony metastasis was treated with radiation therapy. We believe that the patient had one of the longest gaps ever reported, 52 years, between the initial diagnosis and metastasis of paraganglioma. This case highlights the importance of long-term surveillance of patients with paraganglioma for metastasis.
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- 2024
17. Exploring the sugar-sweetened beverage tax (SSBT) pass-through rate in the Irish hospitality sector
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Houghton, Frank, Moran Stritch, J., Auerbach, J., Daly, M., and Houghton, D.
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- 2024
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18. The Human Connectome Project of adolescent anxiety and depression dataset
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Hubbard, N. A., Bauer, C. C. C., Siless, V., Auerbach, R. P., Elam, J. S., Frosch, I. R., Henin, A., Hofmann, S. G., Hodge, M. R., Jones, R., Lenzini, P., Lo, N., Park, A. T., Pizzagalli, D. A., Vaz-DeSouza, F., Gabrieli, J. D. E., Whitfield-Gabrieli, S., Yendiki, A., and Ghosh, S. S.
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- 2024
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19. Condyloma lata in an HIV patient with secondary syphilis masquerading as anal condyloma—a case report
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Anand Raman, Abhinandan, Auerbach, Jena, and Wang, Gary P.
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- 2024
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20. Why do adolescents attempt suicide? Insights from leading ideation-to-action suicide theories: a systematic review
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Kirshenbaum, Jaclyn S., Pagliaccio, David, Bitran, Alma, Xu, Elisa, and Auerbach, Randy P.
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- 2024
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21. Optimal rainfall threshold for monsoon rice production in India varies across space and time
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Maiti, Arabinda, Hasan, Md Kamrul, Sannigrahi, Srikanta, Bar, Somnath, Chakraborti, Suman, Mahto, Shanti Shwarup, Chatterjee, Sumanta, Pramanik, Suvamoy, Pilla, Francesco, Auerbach, Jeremy, Sonnentag, Oliver, Song, Conghe, and Zhang, Qi
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- 2024
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22. Probing the digital exposome: associations of social media use patterns with youth mental health
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Pagliaccio, David, Tran, Kate T., Visoki, Elina, DiDomenico, Grace E., Auerbach, Randy P., and Barzilay, Ran
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- 2024
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23. Neural sensitivity following stress predicts anhedonia symptoms: a 2-year multi-wave, longitudinal study
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Kirshenbaum, Jaclyn S., Pagliaccio, David, Pizzagalli, Diego A., and Auerbach, Randy P.
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- 2024
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24. Early Antenatal Support for Iron Deficiency Anemia (EASI-A)
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Auerbach Hematology and Oncology
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- 2024
25. Imaging doses for different CBCT protocols on the Halcyon 3.0 linear accelerator – TLD measurements in an anthropomorphic phantom
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Angelika Altergot, Michaela Schürmann, Tanja Jungert, Hendrik Auerbach, Frank Nüsken, Jan Palm, Christian Rübe, Claudia E. Rübe, and Yvonne Dzierma
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Halcyon ,Image guided radiotherapy ,kV-CBCT ,Imaging dose ,Anthropomorphic phantom ,Thermoluminescent dosimeters ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Introduction: Image guided radiotherapy allows for particularly conformal tumour irradiation through precise patient positioning. Becoming the standard for radiotherapy, this increases imaging doses to the patient. The Halcyon 3.0 linear accelerator (Varian Medical Systems, Palo Alto, CA) requires daily imaging due to its geometry. For this reason, the accelerator is equipped with on-line kV and MV imaging. However, daily CBCT images required for irradiation apply additional radiation, which increases the dose to normal tissue and therefore can affect the patient's secondary cancer risk. In this study, actual organ doses were measured for the kV system, and a comparison of normal tissue doses for all available kV CBCT protocols was presented to demonstrate differences in imaging doses across entities and protocols. In addition, effective dose and secondary cancer risk from imaging are evaluated. Material and methods: Measurements were performed with thermoluminescent dosimeters in an anthropomorphic phantom positioned according to each entity (brain, head and neck, breast, lung, pelvis). CBCT images were obtained, using all available pre-set protocols without further adjustment of the parameters. Measured doses for each position and each protocol were then compared and secondary cancer risk of relevant and specifically radiosensitive organs was calculated. Results: It was found that imaging doses for protocols such as Pelvis and Head could be reduced by up to half using the corresponding Fast and Low Dose modes, respectively. On the other hand, larger field sizes or the Large mode yielded higher doses than their initial protocols. Image Gently was found to spare normal tissue best, however it is not suitable for certain entities due to low image quality or insufficient projection data. Discussion: By using appropriate kV-CBCT protocols, it is possible to reduce imaging doses to a significant extent and therefore spare healthy tissue. Combined with studies of image quality, the results of this study could lead to adjustments in workflow regarding the choice of protocols used in daily routine. This could prevent unnecessary radiation exposure and reduce secondary cancer risk.
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- 2024
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26. Metallic transport of hard core bosons
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Bhattacharyya, Sauri, De, Ayush, Gazit, Snir, and Auerbach, Assa
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Quantum Gases ,Condensed Matter - Superconductivity - Abstract
Conductivities and Hall coefficients of two dimensional hard core bosons are calculated using the thermodynamic expansions of Kubo formulas. At temperatures above the superfluid transition, the resistivity rises linearly and is weakly dependent on boson filling. The zeroth order Hall coefficient diverges toward zero and unit fillings, and reverses its sign at half filling. The correction terms, which are calculated up to fourth (Krylov) orders, do not alter this behavior. The high temperature thermal Hall coefficient is reversed relative to the electric Hall coefficient. We discuss relevance of HCB transport to the metallic state of short coherence length superconductors., Comment: New version is a longer review paper
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- 2023
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27. The two critical temperatures conundrum in La$_{1.83}$Sr$_{0.17}$CuO$_4$
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Samanta, Abhisek, Mangel, Itay, Keren, Amit, Arovas, Daniel P., and Auerbach, Assa
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Condensed Matter - Superconductivity - Abstract
The in-plane and out-of-plane superconducting stiffness of LSCO rings appear to vanish at different transition temperatures, which contradicts thermodynamical expectation. In addition, we observe a surprisingly strong dependence of the out-of-plane stiffness transition on sample width. With evidence from Monte Carlo simulations, this effect is explained by very small ratio $\alpha$ of interplane over intraplane superconducting stiffnesses. For three dimensional rings of millimeter dimensions, a crossover from layered three dimensional to quasi one dimensional behavior occurs at temperatures near the thermodynamic transition temperature $T_{\rm c}$, and the out of-plane stiffness appears to vanish below $T_{\rm c}$ by a temperature shift of order $\alpha L_a/\xi^\parallel$, where $L_a/\xi^\parallel$ is the sample's width over coherence length. Including the effects of layer-correlated disorder, the measured temperature shifts can be fit by $\alpha=4.1\times 10^{-5}$ near $T_{\rm c}$, which is significantly lower than its previously measured value near zero temperature.
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- 2023
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28. Electronic health record intervention to increase use of NSAIDs as analgesia for hospitalised patients: a cluster randomised controlled study.
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Robinson, Andrew, Lancaster, Elizabeth, Wick, Elizabeth, Auerbach, Andrew, Pletcher, Mark, Bongiovanni, Tasce, Behrends, Matthias, and Zhang, Li
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Electronic Health Records ,Health Services Research ,Pain Management ,Adult ,Humans ,Anti-Inflammatory Agents ,Non-Steroidal ,Pain Management ,Analgesics ,Opioid ,Electronic Health Records ,Hospital Mortality ,Pain ,Analgesia - Abstract
BACKGROUND: Prescribing non-opioid pain medications, such as non-steroidal anti-inflammatory (NSAIDs) medications, has been shown to reduce pain and decrease opioid use, but it is unclear how to effectively encourage multimodal pain medication prescribing for hospitalised patients. Therefore, the aim of this study is to evaluate the effect of prechecking non-opioid pain medication orders on clinician prescribing of NSAIDs among hospitalised adults. METHODS: This was a cluster randomised controlled trial of adult (≥18 years) hospitalised patients admitted to three hospital sites under one quaternary hospital system in the USA from 2 March 2022 to 3 March 2023. A multimodal pain order panel was embedded in the admission order set, with NSAIDs prechecked in the intervention group. The intervention group could uncheck the NSAID order. The control group had access to the same NSAID order. The primary outcome was an increase in NSAID ordering. Secondary outcomes include NSAID administration, inpatient pain scores and opioid use and prescribing and relevant clinical harms including acute kidney injury, new gastrointestinal bleed and in-hospital death. RESULTS: Overall, 1049 clinicians were randomised. The study included 6239 patients for a total of 9595 encounters. Both NSAID ordering (36 vs 43%, p
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- 2023
29. Achieving diagnostic excellence through prevention and teamwork (ADEPT) study protocol: A multicenter, prospective quality and safety program to improve diagnostic processes in medical inpatients.
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Schnipper, Jeffrey, Raffel, Katie, Keniston, Angela, Burden, Marisha, Glasheen, Jeffrey, Ranji, Sumant, Hubbard, Colin, Kantor, Molly, Adler-Milstein, Julia, John Boscardin, W, Harrison, James, Dalal, Anuj, Lee, Tiffany, Auerbach, Andrew, and Barish, Peter
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Humans ,Inpatients ,Prospective Studies ,Hospitals ,Hospitalization ,Diagnostic Errors ,Multicenter Studies as Topic - Abstract
BACKGROUND: Few hospitals have built surveillance for diagnostic errors into usual care or used comparative quantitative and qualitative data to understand their diagnostic processes and implement interventions designed to reduce these errors. OBJECTIVES: To build surveillance for diagnostic errors into usual care, benchmark diagnostic performance across sites, pilot test interventions, and evaluate the programs impact on diagnostic error rates. METHODS AND ANALYSIS: Achieving diagnostic excellence through prevention and teamwork (ADEPT) is a multicenter, real-world quality and safety program utilizing interrupted time-series techniques to evaluate outcomes. Study subjects will be a randomly sampled population of medical patients hospitalized at 16 US hospitals who died, were transferred to intensive care, or had a rapid response during the hospitalization. Surveillance for diagnostic errors will occur on 10 events per month per site using a previously established two-person adjudication process. Concurrent reviews of patients who had a qualifying event in the previous week will allow for surveys of clinicians to better understand contributors to diagnostic error, or conversely, examples of diagnostic excellence, which cannot be gleaned from medical record review alone. With guidance from national experts in quality and safety, sites will report and benchmark diagnostic error rates, share lessons regarding underlying causes, and design, implement, and pilot test interventions using both Safety I and Safety II approaches aimed at patients, providers, and health systems. Safety II approaches will focus on cases where diagnostic error did not occur, applying theories of how people and systems are able to succeed under varying conditions. The primary outcome will be the number of diagnostic errors per patient, using segmented multivariable regression to evaluate change in y-intercept and change in slope after initiation of the program. ETHICS AND DISSEMINATION: The study has been approved by the University of California, San Francisco Institutional Review Board (IRB), which is serving as the single IRB. Intervention toolkits and study findings will be disseminated through partners including Vizient, The Joint Commission, and Press-Ganey, and through national meetings, scientific journals, and publications aimed at the general public.
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- 2023
30. Visual and whole-body quantitative analyses of 68 Ga-DOTATATE PET/CT for prognosis of outcome after PRRT with 177Lu-DOTATATE
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Hotta, Masatoshi, Sonni, Ida, Thin, Pan, Nguyen, Kathleen, Gardner, Linda, Ciuca, Liliana, Hayrapetian, Artineh, Lewis, Meredith, Lubin, David, and Allen-Auerbach, Martin
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- 2024
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31. Identifying Socially Disruptive Policies
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Auerbach, Eric and Cai, Yong
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Economics - Econometrics ,Statistics - Methodology - Abstract
Social disruption occurs when a policy creates or destroys many network connections between agents. It is a costly side effect of many interventions and so a growing empirical literature recommends measuring and accounting for social disruption when evaluating the welfare impact of a policy. However, there is currently little work characterizing what can actually be learned about social disruption from data in practice. In this paper, we consider the problem of identifying social disruption in a research design that is popular in the literature. We provide two sets of identification results. First, we show that social disruption is not generally point identified, but informative bounds can be constructed using the eigenvalues of the network adjacency matrices observed by the researcher. Second, we show that point identification follows from a theoretically motivated monotonicity condition, and we derive a closed form representation. We apply our methods in two empirical illustrations and find large policy effects that otherwise might be missed by alternatives in the literature., Comment: The online appendix can be found at https://www.dropbox.com/s/qd8ofi3iokneq69/onlineAppendix.pdf?dl=0. An R package for implementation can be found at https://github.com/yong-cai/MatrixHTE
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- 2023
32. Neural Mixed Effects for Nonlinear Personalized Predictions
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Wörtwein, Torsten, Allen, Nicholas, Sheeber, Lisa B., Auerbach, Randy P., Cohn, Jeffrey F., and Morency, Louis-Philippe
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Personalized prediction is a machine learning approach that predicts a person's future observations based on their past labeled observations and is typically used for sequential tasks, e.g., to predict daily mood ratings. When making personalized predictions, a model can combine two types of trends: (a) trends shared across people, i.e., person-generic trends, such as being happier on weekends, and (b) unique trends for each person, i.e., person-specific trends, such as a stressful weekly meeting. Mixed effect models are popular statistical models to study both trends by combining person-generic and person-specific parameters. Though linear mixed effect models are gaining popularity in machine learning by integrating them with neural networks, these integrations are currently limited to linear person-specific parameters: ruling out nonlinear person-specific trends. In this paper, we propose Neural Mixed Effect (NME) models to optimize nonlinear person-specific parameters anywhere in a neural network in a scalable manner. NME combines the efficiency of neural network optimization with nonlinear mixed effects modeling. Empirically, we observe that NME improves performance across six unimodal and multimodal datasets, including a smartphone dataset to predict daily mood and a mother-adolescent dataset to predict affective state sequences where half the mothers experience at least moderate symptoms of depression. Furthermore, we evaluate NME for two model architectures, including for neural conditional random fields (CRF) to predict affective state sequences where the CRF learns nonlinear person-specific temporal transitions between affective states. Analysis of these person-specific transitions on the mother-adolescent dataset shows interpretable trends related to the mother's depression symptoms., Comment: camera-ready version
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- 2023
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33. Scanning SQUID-on-tip microscope in a top-loading cryogen-free dilution refrigerator
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Zhou, Haibiao, Auerbach, Nadav, Roy, Indranil, Bocarsly, Matan, Huber, Martin E., Barick, Barun, Pariari, Arnab, Hücker, Markus, Lim, Zhi Shiuh, Ariando, A., Berdyugin, Alexey I., Xin, Na, Rappaport, Michael, Myasoedov, Yuri, and Zeldov, Eli
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Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
The scanning superconducting quantum interference device (SQUID) fabricated on the tip of a sharp quartz pipette (SQUID-on-tip) has emerged as a versatile tool for nanoscale imaging of magnetic, thermal, and transport properties of microscopic devices of quantum materials. We present the design and performance of a scanning SQUID-on-tip microscope in a top-loading probe of a cryogen-free dilution refrigerator. The microscope is enclosed in a custom-made vacuum-tight cell mounted at the bottom of the probe and is suspended by springs to suppress vibrations caused by the pulse tube cryocooler. Two capillaries allow in-situ control of helium exchange gas pressure in the cell that is required for thermal imaging. A nanoscale heater is used to create local temperature gradients in the sample, which enables quantitative characterization of the relative vibrations between the tip and the sample. The spectrum of the vibrations shows distinct resonant peaks with maximal power density of about 27 nm/Hz$^{1/2}$ in the in-plane direction. The performance of the SQUID-on-tip microscope is demonstrated by magnetic imaging of the MnBi$_2$Te$_4$ magnetic topological insulator, magnetization and current distribution imaging in a SrRuO$_3$ ferromagnetic oxide thin film, and by thermal imaging of dissipation in graphene., Comment: Submitted to Review of Scientific Instruments
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- 2023
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34. Exploring the sugar-sweetened beverage tax (SSBT) pass-through rate in the Irish hospitality sector
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Frank Houghton, J. Moran Stritch, J. Auerbach, M. Daly, and D. Houghton
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SSBT ,Sugar-sweetened beverage tax ,Sugar tax ,Ireland ,Pass-through rate ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The World Health Organization (WHO) supports the use of Sugar-Sweetened Beverage Taxes (SSBTs) as a fiscal lever to help reduce sugar consumption and tackle obesity. Obesity is associated with a range of adverse health outcomes. In response to increasing levels of obesity in Ireland, an SSBT was introduced in 2018. Previous research in Ireland has noted that the pass-through rate of the SSBT in retail (off-site consumption) settings was poor. However, to date, no research has examined the SSBT pass-through rate in hospitality (on-site consumption) venues in Ireland. Methods This research examines the SSBT pass-through rate on Coca-Cola versus diet versions of Coca-Cola in a convenience sample of 100 hospitality venues in two provincial Irish cities. Results Wilcoxon signed rank test analysis revealed that regular Coca-Cola was significantly more expensive compared to the price charged for diet versions of Coca-Cola. However, in 85.6% of cases the same price was charged for both full-sugar and sugar-free drinks. The mean pass-through rate of the SSBT was 33.8%. Conclusion The effective functioning of the SSBT is premised on persistent price differences between soft drink prices based on sugar content. However, this is barely evident in the hospitality sector in Ireland. A number of recommendations are suggested, including both increasing the SSBT, and increasing it annually in line with inflation.
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- 2024
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35. The Human Connectome Project of adolescent anxiety and depression dataset
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N. A. Hubbard, C. C. C. Bauer, V. Siless, R. P. Auerbach, J. S. Elam, I. R. Frosch, A. Henin, S. G. Hofmann, M. R. Hodge, R. Jones, P. Lenzini, N. Lo, A. T. Park, D. A. Pizzagalli, F. Vaz-DeSouza, J. D. E. Gabrieli, S. Whitfield-Gabrieli, A. Yendiki, and S. S. Ghosh
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Science - Abstract
Abstract This article describes primary data and resources available from the Boston Adolescent Neuroimaging of Depression and Anxiety (BANDA) study, a novel arm of the Human Connectome Project (HCP). Data were collected from 215 adolescents (14–17 years old), 152 of whom had current diagnoses of anxiety and/or depressive disorders at study intake. Data include cross-sectional structural (T1- and T2-weighted), functional (resting state and three tasks), and diffusion-weighted magnetic resonance images. Both unprocessed and HCP minimally-preprocessed imaging data are available within the data release packages. Adolescent and parent clinical interview data, as well as cognitive and neuropsychological data are also included within these packages. Release packages additionally provide data collected from self-report measures assessing key features of adolescent psychopathology, including: anxious and depressive symptom dimensions, behavioral inhibition/activation, exposure to stressful life events, and risk behaviors. Finally, the release packages include 6- and 12-month longitudinal data acquired from clinical measures. Data are publicly accessible through the National Institute of Mental Health Data Archive (ID: #2505).
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- 2024
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36. Emergency Department Pediatric Readiness Among US Trauma Centers: A Machine Learning Analysis of Components Associated With Survival.
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Newgard, Craig, Babcock, Sean, Song, Xubo, Remick, Katherine, Gausche-Hill, Marianne, Lin, Amber, Malveau, Susan, Mann, N, Nathens, Avery, Cook, Jennifer, Jenkins, Peter, Burd, Randall, Hewes, Hilary, Glass, Nina, Jensen, Aaron, Fallat, Mary, Ames, Stefanie, Salvi, Apoorva, McConnell, K, Ford, Rachel, Auerbach, Marc, Bailey, Jessica, Riddick, Tyne, Xin, Haichang, and Kuppermann, Nathan
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United States ,Child ,Humans ,Emergency Service ,Hospital ,Retrospective Studies ,Trauma Centers ,Surveys and Questionnaires ,Hospitals - Abstract
OBJECTIVE: We used machine learning to identify the highest impact components of emergency department (ED) pediatric readiness for predicting in-hospital survival among children cared for in US trauma centers. BACKGROUND: ED pediatric readiness is associated with improved short-term and long-term survival among injured children and part of the national verification criteria for US trauma centers. However, the components of ED pediatric readiness most predictive of survival are unknown. METHODS: This was a retrospective cohort study of injured children below 18 years treated in 458 trauma centers from January 1, 2012, through December 31, 2017, matched to the 2013 National ED Pediatric Readiness Assessment and the American Hospital Association survey. We used machine learning to analyze 265 potential predictors of survival, including 152 ED readiness variables, 29 patient variables, and 84 ED-level and hospital-level variables. The primary outcome was in-hospital survival. RESULTS: There were 274,756 injured children, including 4585 (1.7%) who died. Nine ED pediatric readiness components were associated with the greatest increase in survival: policy for mental health care (+8.8% change in survival), policy for patient assessment (+7.5%), specific respiratory equipment (+7.2%), policy for reduced-dose radiation imaging (+7.0%), physician competency evaluations (+4.9%), recording weight in kilograms (+3.2%), life support courses for nursing (+1.0%-2.5%), and policy on pediatric triage (+2.5%). There was a 268% improvement in survival when the 5 highest impact components were present. CONCLUSIONS: ED pediatric readiness components related to specific policies, personnel, and equipment were the strongest predictors of pediatric survival and worked synergistically when combined.
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- 2023
37. Increasing the meaningful involvement of women in HIV cure-related research: a qualitative interview study in the United States
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Dubé, Karine, Barr, Elizabeth, Philbin, Morgan, Perez-Brumer, Amaya, Minalga, Brian, Peterson, Beth, Averitt, Dawn, Picou, Bridgette, Martel, Krista, Chung, Cecilia, Mejía, María, Cameron, Martha, Graham, Gail, Dee, Lynda, Diallo, Dázon Dixon, Gordon, Ebony, Korolkova, Anastasia, Dyer, Typhanye, Auerbach, Judith D, Scully, Eileen, Dong, Krista L, and Gianella, Sara
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Biomedical and Clinical Sciences ,Clinical Sciences ,Sexually Transmitted Infections ,Women's Health ,Behavioral and Social Science ,HIV/AIDS ,Health Disparities ,Clinical Trials and Supportive Activities ,Clinical Research ,Infectious Diseases ,Prevention ,Minority Health ,Good Health and Well Being ,Gender Equality ,Female ,Humans ,Male ,United States ,Qualitative Research ,Empirical Research ,Academies and Institutes ,Biopsy ,HIV Infections ,Women ,HIV ,clinical trials ,participation ,meaningful involvement ,HIV cure research - Abstract
BackgroundCisgender women represent over half of people living with HIV globally. However, current research efforts toward a cure for HIV focus predominantly on cisgender men. The under-representation of women in HIV cure clinical studies is particularly problematic given data suggesting that sex-dependent phenotypes limit scientific discovery.ObjectiveWe aimed to generate considerations to increase the meaningful involvement of women in HIV cure-related research.Materials and methodsWe conducted in-depth interviews with biomedical researchers and community members to better understand factors that could increase the meaningful involvement of women in HIV cure clinical trials. Participants were affiliated with academia, industry, community advisory boards, and community-based organizations, and were identified using listings from the AIDS Clinical Trials Group and the Martin Delaney Collaboratories. We used conventional content analysis to analyze the qualitative data.ResultsWe recruited 27 participants, of whom 11 were biomedical researchers and 16 were community members. Participants included 25 cisgender women, 1 transgender woman, and 1 cisgender man. Key considerations emerged, including the need to ensure that HIV cure studies reflect HIV epidemiologic trends and having accurate representation by sex and gender in HIV cure research. To increase the meaningful involvement of women, recommendations included instituting intentional enrollment goals, frequent and mandatory reporting on enrollment, and incentives for sites to enroll women. Additional themes included the need for agency and self-determination, attention to lived experiences, trauma and healing, and adequate support for women (e.g. logistical, psychosocial, mental, emotional, and physical). Participants noted that women would be willing to participate in HIV cure trials, related procedures (e.g. biopsies), and analytical treatment interruptions. They also expressed a desired for women-centered and holistic clinical trial designs that account for intersectionality.ConclusionsOur empirical inquiry extends recent calls to action to increase diversity of people involved in HIV cure research. Redressing the under-inclusion of women in HIV cure research is an urgent imperative. The entire field must mobilize and reform to achieve this goal. Meaningfully involving women across the gender spectrum in HIV cure research is needed to ensure that interventions are safe, effective, scalable, and acceptable for all people with HIV.
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- 2023
38. A behavioral intervention to promote use of multimodal pain medication for hospitalized patients: A randomized controlled trial.
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Bongiovanni, Tasce, Pletcher, Mark, Lau, Catherine, Robinson, Andrew, Lancaster, Elizabeth, Zhang, Li, Behrends, Matthias, Wick, Elizabeth, and Auerbach, Andrew
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Adult ,Humans ,Female ,Middle Aged ,Male ,Analgesics ,Opioid ,Practice Patterns ,Physicians ,Anti-Inflammatory Agents ,Non-Steroidal ,Pain ,Patients - Abstract
BACKGROUND: The use of nonsteroidal anti-inflammatory drugs (NSAIDs) can reduce pain and has become a core strategy to decrease opioid use, but there is a lack of data to describe encouraging use when admitting patients using electronic health record systems. OBJECTIVE: Assess an electronic health record system to increase ordering of NSAIDs for hospitalized adults. DESIGNS, SETTINGS AND PARTICIPANTS: We performed a cluster randomized controlled trial of clinicians admitting adult patients to a health system over a 9-month period. Clinicians were randomized to use a standard admission order set. INTERVENTION: Clinicians in the intervention arm were required to actively order or decline NSAIDs; the control arm was shown the same order but without a required response. MAIN OUTCOME AND MEASURES: The primary outcome was NSAIDs ordered and administered by the first full hospital day. Secondary outcomes included pain scores and opioid prescribing. RESULTS: A total of 20,085 hospitalizations were included. Among these hospitalizations, patients had a mean age of 58 years, and a Charlson comorbidity score of 2.97, while 50% and 56% were female and White, respectively. Overall, 52% were admitted by a clinician randomized to the intervention arm. NSAIDs were ordered in 2267 (22%) interventions and 2093 (22%) control admissions (p = .10). Similarly, there were no statistical differences in NSAID administration, pain scores, or opioid prescribing. Average pain scores (0-5 scale) were 3.36 in the control group and 3.39 in the intervention group (p = .46). There were no differences in clinical harms. CONCLUSIONS AND RELEVANCE: Requiring an active decision to order an NSAID at admission had no demonstrable impact on NSAID ordering. Multicomponent interventions, perhaps with stronger decision support, may be necessary to encourage NSAID ordering.
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- 2023
39. “I Would Absolutely Need to Know That My Partner Is Still Going to be Protected”: Perceptions of HIV Cure-Related Research Among Diverse HIV Serodifferent Couples in the United States
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Dubé, Karine, Agarwal, Harsh, Stockman, Jamila K, Auerbach, Judith D, Sauceda, John A, Conroy, Amy A, and Johnson, Mallory O
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Biomedical and Clinical Sciences ,Immunology ,Infectious Diseases ,Minority Health ,Sexually Transmitted Infections ,Health Disparities ,Clinical Trials and Supportive Activities ,Clinical Research ,HIV/AIDS ,Women's Health ,Behavioral and Social Science ,Mental Health ,7.1 Individual care needs ,Infection ,Humans ,United States ,HIV Infections ,HIV Seropositivity ,Sexual Partners ,Anti-HIV Agents ,Sexual Behavior ,HIV cure-related research ,sociobehavioral sciences ,HIV serodifferent couples ,Clinical Sciences ,Virology ,Clinical sciences - Abstract
Most HIV cure studies remain in the early stage of investigation and may carry clinical risks to the participants and, in some cases, their partners. Surprisingly little sociobehavioral research has investigated the perceptions of couples-including HIV serodifferent couples-around HIV cure research, including factors that would influence recruitment and retention in trials. We conducted a qualitative study to explore perceptions of diverse HIV serodifferent partners in the United States. We recruited 10 diverse HIV serodifferent couples (20 participants). We found participants had learned to cope with the reality of HIV, including protections during sex, and ascribed both positive and negative meanings to an HIV cure. Partners expressed concern about each other's health and potentially caring for a sick partner and emphasized the importance of safety when participating in an HIV cure trial. They identified the need for partner protection measures during analytical treatment interruptions (ATIs) as an ethical imperative. Participants recounted experiences of HIV stigma due to being in HIV serodifferent relationships and viewed ATIs as leading to a detectable viral load, which could limit sexual expression, complicate disclosure decision making, and worsen HIV-related stigma. Our study's main contribution is to inform efforts to meaningfully engage diverse HIV serodifferent partners in HIV cure research in the United States. Our data suggest people with HIV make decisions to participate in research based on close ones in their life and underscore the critical importance of acknowledging relationship dynamics in decisions to participate in research.
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- 2023
40. Willingness of Racially Diverse Young Adults Living with HIV to Participate in HIV Cure Research: A Cross-Sectional Survey in the United States
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Dubé, Karine, Campbell, Chadwick K, Eskaf, Shadi, Sauceda, John A, Ndukwe, Samuel, Henley, Laney, Persaud, Deborah, Deeks, Steven G, Auerbach, Judith D, and Saberi, Parya
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Medical Microbiology ,Biomedical and Clinical Sciences ,Health Disparities ,HIV/AIDS ,Sexually Transmitted Infections ,Infectious Diseases ,Clinical Research ,Minority Health ,Behavioral and Social Science ,Pediatric ,Infection ,Male ,Adolescent ,Humans ,United States ,Young Adult ,Adult ,Cross-Sectional Studies ,HIV Infections ,Sexual Partners ,Surveys and Questionnaires ,young adults ,HIV ,HIV cure research ,sociobehavioral sciences ,racial and ethnic minorities ,Clinical Sciences ,Virology ,Clinical sciences - Abstract
Nearly half of new HIV cases in the United States are among youth. Little is known about the willingness of young adults living with HIV (YLWH) to participate in HIV cure-related research. In 2021, we recruited 271 YLWH aged 18-29 for an online survey. We asked questions about willingness to participate in HIV cure research, perceived risks and benefits, acceptable trade-offs, and perceptions on analytical treatment interruptions. We conducted descriptive analyses to summarize data and bivariate analyses to explore correlations by demographics. Most respondents (mean age = 26) identified as men (86%) and Black Americans (69%). YLWH expressed high willingness to consider participating in cell- and gene-based approaches (75%) and immune-based approaches (71%). Approximately 45% would be willing to let their viral load become detectable for a period of time during an HIV cure study, 27% would not be willing, and 28% did not know. The social risk most likely to deter participation was the possibility of transmitting HIV to sex partners while off HIV medications (65% of respondents would be deterred a great deal or a lot). Compared to the 25-29 age group (n = 192), the 18-24 age group (n = 79) was more likely to indicate that having to disclose HIV status would matter a great deal in considering participation in HIV cure research (38% vs. 21%, p = .003). Inclusion and engagement of YLWH are critical for advancing novel HIV curative agents. Our article concludes with possible considerations for engaging YLWH in HIV cure research. Physical, clinical, and social risks will need to be kept to a minimum, and research teams will need to proactively mitigate the possibility of transmitting HIV to sex partners while off HIV medications.
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- 2023
41. Origin of octupole deformation softness in atomic nuclei
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Bui, Minh-Loc, Nguyen, Le-Anh, Papakonstantinou, Panagiota, and Auerbach, Naftali
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Nuclear Theory - Abstract
Recent high-energy heavy ion collision experiments have revealed that some atomic nuclei exhibit unusual softness and significant shape fluctuations. In this work, we use the fully self-consistent mean-field theory to identify all even-even nuclei that are unstable or soft against octupole deformation. All exceptional cases of enhanced octupole transition strengths in stable even-even nuclei throughout the nuclide chart are resolved and the origin is found in basic shell structure. The presence of atomic nuclei exhibiting significant softness to quadrupole-octupole deformation is suggested. These results represent a significant advance in our understanding of the underlying mechanisms of nuclear octupole deformation and have implications for further experimental and theoretical studies., Comment: 7 pages, 2 figures, accepted for publication in Physical Review C
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- 2023
42. Quantifying & Modeling Multimodal Interactions: An Information Decomposition Framework
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Liang, Paul Pu, Cheng, Yun, Fan, Xiang, Ling, Chun Kai, Nie, Suzanne, Chen, Richard, Deng, Zihao, Allen, Nicholas, Auerbach, Randy, Mahmood, Faisal, Salakhutdinov, Ruslan, and Morency, Louis-Philippe
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computation and Language ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Information Theory - Abstract
The recent explosion of interest in multimodal applications has resulted in a wide selection of datasets and methods for representing and integrating information from different modalities. Despite these empirical advances, there remain fundamental research questions: How can we quantify the interactions that are necessary to solve a multimodal task? Subsequently, what are the most suitable multimodal models to capture these interactions? To answer these questions, we propose an information-theoretic approach to quantify the degree of redundancy, uniqueness, and synergy relating input modalities with an output task. We term these three measures as the PID statistics of a multimodal distribution (or PID for short), and introduce two new estimators for these PID statistics that scale to high-dimensional distributions. To validate PID estimation, we conduct extensive experiments on both synthetic datasets where the PID is known and on large-scale multimodal benchmarks where PID estimations are compared with human annotations. Finally, we demonstrate their usefulness in (1) quantifying interactions within multimodal datasets, (2) quantifying interactions captured by multimodal models, (3) principled approaches for model selection, and (4) three real-world case studies engaging with domain experts in pathology, mood prediction, and robotic perception where our framework helps to recommend strong multimodal models for each application., Comment: NeurIPS 2023. Code available at: https://github.com/pliang279/PID
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- 2023
43. Conformational dynamics of a nicotinic receptor neurotransmitter site
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Mrityunjay Singh, Dinesh C Indurthi, Lovika Mittal, Anthony Auerbach, and Shailendra Asthana
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nicotinic receptor ,ion channel ,allostery ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Agonists enhance receptor activity by providing net-favorable binding energy to active over resting conformations, with efficiency (η) linking binding energy to gating. Previously, we showed that in nicotinic receptors, η-values are grouped into five structural pairs, correlating efficacy and affinity within each class, uniting binding with allosteric activation (Indurthi and Auerbach, 2023). Here, we use molecular dynamics (MD) simulations to investigate the low-to-high affinity transition (L→H) at the Torpedo α−δ nicotinic acetylcholine receptor neurotransmitter site. Using four agonists spanning three η-classes, the simulations reveal the structural basis of the L→H transition where: the agonist pivots around its cationic center (‘flip’), loop C undergoes staged downward displacement (‘flop’), and a compact, stable high-affinity pocket forms (‘fix’). The η derived from binding energies calculated in silico matched exact values measured experimentally in vitro. Intermediate states of the orthosteric site during receptor activation are apparent only in simulations, but could potentially be observed experimentally via time-resolved structural studies.
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- 2024
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44. Numb-associated kinases regulate sandfly-borne Toscana virus entry
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Yarden Moalem, Rodolfo Katz, Anand G. Subramaniam, Yehonathan Malis, Yakey Yaffe, Nofit Borenstein-Auerbach, Keshet Tadmor, Roey Raved, Ben M. Maoz, Ji Seung Yoo, Yaniv Lustig, Chen Luxenburg, Eran Perlson, Shirit Einav, and Ella H. Sklan
- Subjects
Toscana virus ,Sandfly ,Phleboviruses ,Bunyaviruses ,viral entry ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Sandfly-borne Toscana virus (TOSV) is an enveloped tri-segmented negative single-strand RNA Phlebovirus. It is an emerging virus predominantly endemic in southwestern Europe and Northern Africa. Although TOSV infection is typically asymptomatic or results in mild febrile disease, it is neurovirulent and ranks among the three most common causes of summer meningitis in certain regions. Despite this clinical significance, our understanding of the molecular aspects and host factors regulating phlebovirus infection is limited. This study characterized the early steps of TOSV infection. Our findings reveal that two members of the Numb-associated kinases family of Ser/Thr kinases, namely adaptor-associated kinase 1 (AAK1) and cyclin G-associated kinase (GAK), play a role in regulating the early stages of TOSV entry. FDA-approved inhibitors targeting these kinases demonstrated significant inhibition of TOSV infection. This study suggests that AAK1 and GAK represent druggable targets for inhibiting TOSV infection and, potentially, related Phleboviruses.
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- 2024
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45. Hydroacoustic Evidence for Offshore Lava Emplacement During the 2018 Kīlauea Eruption
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C. Atkins, O. Costa, and J. Caplan‐Auerbach
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Kilauea ,lava‐water interaction ,hydrovolcanic ,hydrophone ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Abstract During the 2018 Kīlauea eruption, over half the erupted lava was deposited on the seafloor. Lava flows crossing the shoreline generated sounds that were recorded by a network of hydrophones. We show that short‐duration, broadband signals associated with lava‐water interactions occurred throughout the eruption but increased in number when the Ahalanui ocean entry initiated on July 11. These terminated in early August coincident with the eruption's end. We compare hydroacoustic data with transmission loss models and eruption photographs to show that coastal explosive activity was poorly recorded by the hydrophone network. Similarly, strong hydroacoustic signals did not correlate with observed activity. These results suggest that acoustic signals were generated by lava flowing up to 100 s of meters offshore. Offshore lava flows can be hazardous to boaters, but hydrophones provide a means by which these hazards can be detected.
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- 2024
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46. Evaluating the feasibility of prehospital point‐of‐care EEG: The prehospital implementation of rapid EEG (PHIRE) study
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Elan L. Guterman, Mary P. Mercer, Andrew J. Wood, Edilberto Amorim, Jonathan K. Kleen, Daniel Gerard, Colleen Kellison, Scott Yamashita, Benjamin Auerbach, Nikita Joshi, and Karl A. Sporer
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Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Point‐of‐care electroencephalography (EEG) devices can be rapidly applied and do not require specialized technologists, creating new opportunities to use EEG during prehospital care. We evaluated the feasibility of point‐of‐care EEG during ambulance transport for 911 calls. Methods This mixed‐methods study was conducted between May 28, 2022 and October 28, 2023. Emergency Medical Services (EMS) clinicians identified eligible individuals, provided emergent treatment, applied EEG, and obtained an EEG recording during ambulance transport. Eligible patients were aged 6 years or older and evaluated for seizure, stroke, or altered mental status. EMS clinicians completed a survey and a brief phone interview following every enrollment. Two epileptologists reviewed EEG recordings for interpretability and artifact. Results There were 34 prehospital encounters in which EEG was applied. Patients had a mean age of 69 years, and 15 (44%) were female. EEG recordings had a median duration of 10 min 30 s. It took EMS clinicians an average of 2.5 min to apply the device and begin EEG recording. There were 14 (47%) recordings where clinicians achieved a high‐quality connection for all 10 electrodes and 32 (94%) recordings that were sufficient in quality to interpret. There were 24 (71%) recordings with six or more channels free of artifact for 5 min or more. All clinicians agreed or strongly agreed that the device was easy to use. Conclusion Among real‐world prehospital encounters for patients with neurologic symptoms, point‐of‐care EEG was rapidly applied and yielded EEG recordings that could be used for clinical interpretation, demonstrating the feasibility of point‐of‐care EEG in future prehospital care.
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- 2024
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47. A new approach methodology to identify tumorigenic chemicals using short-term exposures and transcript profiling
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Victoria Ledbetter, Scott Auerbach, Logan J. Everett, Beena Vallanat, Anna Lowit, Gregory Akerman, William Gwinn, Leah C. Wehmas, Michael F. Hughes, Michael Devito, and J. Christopher Corton
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new approach methodologies ,biomarkers ,liver cancer ,transcript profiling ,adverse outcome pathway ,2-year cancer bioassay ,Toxicology. Poisons ,RA1190-1270 - Abstract
Current methods for cancer risk assessment are resource-intensive and not feasible for most of the thousands of untested chemicals. In earlier studies, we developed a new approach methodology (NAM) to identify liver tumorigens using gene expression biomarkers and associated tumorigenic activation levels (TALs) after short-term exposures in rats. The biomarkers are used to predict the six most common rodent liver cancer molecular initiating events. In the present study, we wished to confirm that our approach could be used to identify liver tumorigens at only one time point/dose and if the approach could be applied to (targeted) RNA-Seq analyses. Male rats were exposed for 4 days by daily gavage to 15 chemicals at doses with known chronic outcomes and liver transcript profiles were generated using Affymetrix arrays. Our approach had 75% or 85% predictive accuracy using TALs derived from the TG-GATES or DrugMatrix studies, respectively. In a dataset generated from the livers of male rats exposed to 16 chemicals at up to 10 doses for 5 days, we found that our NAM coupled with targeted RNA-Seq (TempO-Seq) could be used to identify tumorigenic chemicals with predictive accuracies of up to 91%. Overall, these results demonstrate that our NAM can be applied to both microarray and (targeted) RNA-Seq data generated from short-term rat exposures to identify chemicals, their doses, and mode of action that would induce liver tumors, one of the most common endpoints in rodent bioassays.
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- 2024
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48. Iron Deficiency in Pregnancy and Postpartum: It Is Time for a Change.
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Auerbach, Michael and Munro, Malcolm G
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Humans ,Anemia ,Iron-Deficiency ,Hemoglobins ,Postpartum Period ,Pregnancy ,Female ,Iron Deficiencies ,Paediatrics and Reproductive Medicine ,Obstetrics & Reproductive Medicine - Published
- 2023
49. Guns versus Climate: How Militarization Amplifies the Effect of Economic Growth on Carbon Emissions
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Jorgenson, Andrew K, Clark, Brett, Thombs, Ryan P, Kentor, Jeffrey, Givens, Jennifer E, Huang, Xiaorui, Tinay, Hassan El, Auerbach, Daniel, and Mahutga, Matthew C
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Climate-Related Exposures and Conditions ,Climate Action ,climate change ,environmental sociology ,political-economic sociology ,development sociology ,militarization ,Sociology - Abstract
Building on cornerstone traditions in historical sociology, as well as work in environmental sociology and political-economic sociology, we theorize and investigate with moderation analysis how and why national militaries shape the effect of economic growth on carbon pollution. Militaries exert a substantial influence on the production and consumption patterns of economies, and the environmental demands required to support their evolving infrastructure. As far-reaching and distinct characteristics of contemporary militarization, we suggest that both the size and capital intensiveness of the world’s militaries enlarge the effect of economic growth on nations’ carbon emissions. In particular, we posit that each increases the extent to which the other amplifies the effect of economic growth on carbon pollution. To test our arguments, we estimate longitudinal models of emissions for 106 nations from 1990 to 2016. Across various model specifications, robustness checks, a range of sensitivity analyses, and counterfactual analysis, the findings consistently support our propositions. Beyond advancing the environment and economic growth literature in sociology, this study makes significant contributions to sociological research on climate change and the climate crisis, and it underscores the importance of considering the military in scholarship across the discipline.
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- 2023
50. Prevalence and Causes of Diagnostic Errors in Hospitalized Patients Under Investigation for COVID-19
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Auerbach, Andrew D, Astik, Gopi J, O’Leary, Kevin J, Barish, Peter N, Kantor, Molly A, Raffel, Katie R, Ranji, Sumant R, Mueller, Stephanie K, Burney, Sharran N, Galinsky, Janice, Gershanik, Esteban F, Goyal, Abhishek, Chitneni, Pooja R, Rastegar, Sarah, Esmaili, Armond M, Fenton, Cynthia, Virapongse, Anunta, Ngov, Li-Kheng, Burden, Marisha, Keniston, Angela, Patel, Hemali, Gupta, Ashwin B, Rohde, Jeff, Marr, Ruby, Greysen, S Ryan, Fang, Michele, Shah, Pranav, Mao, Frances, Kaiksow, Farah, Sterken, David, Choi, Justin J, Contractor, Jigar, Karwa, Abhishek, Chia, David, Lee, Tiffany, Hubbard, Colin C, Maselli, Judith, Dalal, Anuj K, and Schnipper, Jeffrey L
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Health Services and Systems ,Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Clinical Research ,Prevention ,Patient Safety ,Adult ,Humans ,COVID-19 ,Retrospective Studies ,Pandemics ,Prevalence ,Diagnostic Errors ,COVID-19 Testing ,General & Internal Medicine ,Clinical sciences ,Health services and systems ,Public health - Abstract
BackgroundThe COVID-19 pandemic required clinicians to care for a disease with evolving characteristics while also adhering to care changes (e.g., physical distancing practices) that might lead to diagnostic errors (DEs).ObjectiveTo determine the frequency of DEs and their causes among patients hospitalized under investigation (PUI) for COVID-19.DesignRetrospective cohort.SettingEight medical centers affiliated with the Hospital Medicine ReEngineering Network (HOMERuN).Target populationAdults hospitalized under investigation (PUI) for COVID-19 infection between February and July 2020.MeasurementsWe randomly selected up to 8 cases per site per month for review, with each case reviewed by two clinicians to determine whether a DE (defined as a missed or delayed diagnosis) occurred, and whether any diagnostic process faults took place. We used bivariable statistics to compare patients with and without DE and multivariable models to determine which process faults or patient factors were associated with DEs.ResultsTwo hundred and fifty-seven patient charts underwent review, of which 36 (14%) had a diagnostic error. Patients with and without DE were statistically similar in terms of socioeconomic factors, comorbidities, risk factors for COVID-19, and COVID-19 test turnaround time and eventual positivity. Most common diagnostic process faults contributing to DE were problems with clinical assessment, testing choices, history taking, and physical examination (all p
- Published
- 2023
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