84 results on '"Bassler, Niels"'
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2. A general algorithm for calculation of recombination losses in ionization chambers exposed to ion beams
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Christensen, Jeppe brage, Tölli, Heiki, and Bassler, Niels
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Physics - Medical Physics ,Physics - Instrumentation and Detectors - Abstract
Dosimetry with ionization chambers in clinical ion beams for radiation therapy requires correction for recombination effects. However, common radiation protocols discriminate between initial and general recombination and provide no universal correction method for the presence of both recombination types in ion beams of charged particles heavier than protons. Here, we present the open source code IonTracks, where the combined initial and general recombination effects in principle can be predicted for any ion beam with arbitrary particle-energy spectrum and temporal structure. IonTracks uses track structure theory to distribute the charge carriers in ion tracks. The charge carrier movements are governed by a pair of coupled differential equations, based on fundamental physical properties as charge carrier drift, diffusion, and recombination, which are solved numerically while the initial and general charge carrier recombination is computed. The algorithm is numerically stable and in accordance with experimentally validated theories for initial recombination in heavy ion tracks and general recombination in a proton beam. IonTracks is validated against the Jaff\'e's and Boag's theory of recombination in pulsed beams of multiple ion species. IonTracks is able to calculate the correction factor for initial and general recombination losses in parallel-plate ionization chambers. Even if only few experimental data on recombination effects in ionization chambers are available today, the universal concept of IonTracks is not limited to the ions investigated here. Future experimental investigations of recombination in pulsed and possibly also continuous ion beams may be conducted with IonTracks, which ultimately may lead to a more precise prediction of recombination factors in complex radiation fields., Comment: 10 pages, 4 figures
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- 2016
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3. Novel radiation quality metrics accounting for proton energy spectra for RBE proton models
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Kalholm, Fredrik, Toma-Dasu, Iuliana, Traneus, Erik, Bassler, Niels, Kalholm, Fredrik, Toma-Dasu, Iuliana, Traneus, Erik, and Bassler, Niels
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Background: For proton therapy, a relative biological effectiveness (RBE) of 1.1 is widely applied clinically. However, due to abundant evidence of variable RBE in vitro, and as suggested in studies of patient outcomes, RBE might increase by the end of the proton tracks, as described by several proposed variable RBE models. Typically, the dose averaged linear energy transfer (LETd) has been used as a radiation quality metric (RQM) for these models. However, the optimal choice of RQM has not been fully explored. Purpose: This study aims to propose novel RQMs that effectively weight protons of different energies, and assess their predictive power for variable RBE in proton therapy. The overall objective is to identify an RQM that better describes the contribution of individual particles to the RBE of proton beams. Methods: High-throughput experimental set-ups of in vitro cell survival studies for proton RBE determination are simulated utilizing the SHIELD-HIT12A Monte Carlo particle transport code. For every data point, the proton energy spectra are simulated, allowing the calculation of novel RQMs by applying different power levels to the spectra of LET or effective Q (Qeff) values. A phenomenological linear-quadratic-based RBE model is then applied to the in vitro data, using various RQMs as input variables, and the model performance is evaluated by root-mean-square-error (RMSE) for the logarithm of cell surviving fractions of each data point. Results: Increasing the power level, that is, putting an even higher weight on higher LET particles when constructing the RQM is generally associated with an increased model performance, with dose averaged LET3 (i.e., dose averaged cubed LET, cLETd) resulting in a RMSE value 0.31, compared to 0.45 for a model based on (linearly weighted) LETd, with similar trends also observed for track averaged and Qeff-based RQMs. Conclusions: The results indicate that improved proton variable RBE models can be constructed assuming a non-lin
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- 2024
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4. Evaluation of in vitro irradiation setup: Designed for the horizontal beamline at the Danish Centre for Particle Therapy
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Frederiksen, Anders Tobias, primary, Jensen, Morten Bjørn, additional, Poulsen, Per Rugaard, additional, Bassler, Niels, additional, Sørensen, Brita Singers, additional, and Sitarz, Mateusz, additional
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- 2024
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5. Analytical expressions for stopping-power ratios relevant for accurate dosimetry in particle therapy
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Lühr, Armin, Hansen, David C., Jäkel, Oliver, Sobolevsky, Nikolai, and Bassler, Niels
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Physics - Medical Physics ,Physics - Instrumentation and Detectors - Abstract
In particle therapy, knowledge of the stopping-power ratios (STPRs) of the ion beam for air and water is necessary for accurate ionization chamber dosimetry. Earlier work has investigated the STPRs for pristine carbon ion beams, but here we expand the calculations to a range of ions (1 <= z <= 18) as well as spread out Bragg peaks (SOBPs) and provide a theoretical in-depth study with a special focus on the parameter regime relevant for particle therapy. The Monte Carlo transport code SHIELD-HIT is used to calculate complete particle-fluence spectra which are required for determining STPRs according to the recommendations of the International Atomic Energy Agency (IAEA). We confirm that the STPR depends primarily on the current energy of the ions rather than on their charge z or absolute position in the medium. However, STPRs for different sets of stopping-power data for water and air recommended by the International Commission on Radiation Units & Measurements (ICRU) are compared, including also the recently revised data for water, yielding deviations up to 2% in the plateau region. In comparison, the influence of the secondary particle spectra on the STPR is about two orders of magnitude smaller in the whole region up till the practical range. The gained insights enable us to propose an analytic approximation for the STPR for both pristine and SOBPs as a function of penetration depth, which parametrically depend only on the initial energy and the residual range of the ion, respectively., Comment: 21 pages, 5 figures, fixed bug with figures in v2
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- 2010
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6. O198 / #132 - FIRST MEASUREMENT OF SECONDARY ELECTRON BREMSSTRAHLUNG TOWARDS IN-VIVO RANGE VERIFICATION IN PRECLINICAL SMALL ANIMAL PROTON THERAPY RESEARCH
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Nitta, Munetaka, Yamaguchi, Mitsutaka, Bortfeldt, Jonathan, Huang, Ze, Pinto, Marco, Bassler, Niels, Yamaya, Taiga, Parodi, Katia, and Kawachi, Naoki
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- 2024
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7. P159 / #895 - EXPLORING NEUTRON CAPTURE ENHANCED PROTON THERAPY (NCEPT): A IN-VITRO AND MICRODOSIMETRIC INVESTIGATION OF TAINTED PROTON BEAMS
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Pan, Vladimir, Tran, Linh, Vohradsky, James, Sørensen, Brita Singers, Rosenfeld, Anatoly, Johansen, Jacob, Sauerwein, Wolfgang, Busk, Morten, and Bassler, Niels
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- 2024
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8. O018 / #533 - IMPLEMENTATION OF THE MICROPLUS SOI MICRODOSIMETRY SYSTEM FOR PATIENT SPECIFIC PLAN EVALUATION IN TERMS OF LETD MAPPING
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Jacobsen, Villads, Tran, Linh, Vestergaard, Anne, Vohradsky, James, Bassler, Niels, and Rosenfeld, Anatoly
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- 2024
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9. Formation of radical anions of radiosensitizers and related model compounds via electrospray ionization
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Feketeová, Linda, Albright, Abigail L., Sørensen, Brita S., Horsman, Michael R., White, Jonathan, O’Hair, Richard A.J., and Bassler, Niels
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- 2014
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10. Optimal reference genes for normalization of qPCR gene expression data from proton and photon irradiated dermal fibroblasts
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Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Swakon, Jan, Olko, Pawel, Andreassen, Christian Nicolaj, Alsner, Jan, and Sørensen, Brita Singers
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- 2018
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11. A systematic review on the usage of averaged LET in radiation biology for particle therapy
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Kalholm, Fredrik, Grzanka, Leszek, Traneus, Erik, Bassler, Niels, Kalholm, Fredrik, Grzanka, Leszek, Traneus, Erik, and Bassler, Niels
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Linear Energy Transfer (LET) is widely used to express the radiation quality of ion beams, when characterizing the biological effectiveness. However, averaged LET may be defined in multiple ways, and the chosen definition may impact the resulting reported value. We review averaged LET definitions found in the literature, and quantify which impact using these various definitions have for different reference setups. We recorded the averaged LET definitions used in 354 publications quantifying the relative biological effectiveness (RBE) of hadronic beams, and investigated how these various definitions impact the reported averaged LET using a Monte Carlo particle transport code. We find that the kind of averaged LET being applied is, generally, poorly defined. Some definitions of averaged LET may influence the reported averaged LET values up to an order of magnitude. For publications involving protons, most applied dose averaged LET when reporting RBE. The absence of what target medium is used and what secondary particles are included further contributes to an ill-defined averaged LET. We also found evidence of inconsistent usage of averaged LET definitions when deriving LET-based RBE models. To conclude, due to commonly ill-defined averaged LET and to the inherent problems of LET-based RBE models, averaged LET may only be used as a coarse indicator of radiation quality. We propose a more rigorous way of reporting LET values, and suggest that ideally the entire particle fluence spectra should be recorded and provided for future RBE studies, from which any type of averaged LET (or other quantities) may be inferred.
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- 2021
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12. Calculation of the Beam-Modulation Effect of the Lung in Carbon Ion and Proton Therapy With Deterministic Pencil Beam Algorithms
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Printz Ringbaek, Toke, Santiago, Alina, Grzanka, Leszek, Baumann, Kilian, Flatten, Veronika, Engenhart-Cabillic, Rita, Bassler, Niels, Zink, Klemens, Weber, Uli, Printz Ringbaek, Toke, Santiago, Alina, Grzanka, Leszek, Baumann, Kilian, Flatten, Veronika, Engenhart-Cabillic, Rita, Bassler, Niels, Zink, Klemens, and Weber, Uli
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Ion beams passing through lung tissue show more pronounced energy straggling than expected for solid materials of the same thickness. Energy straggling in active scanning particle therapy can enlarge the pencil beam Bragg peaks in-depth as well as displace them, deteriorating the dose coverage of a target within the lung. While this is not yet considered in any known treatment planning system, we implement a mathematical model to be used for treatment planning, using TRiP98, which relies on a deterministic pencil beam algorithm. Through a randomization process based on a continuous Poisson probability distribution, the HU values of lung voxels are replaced with a modified value in successive iterations. The beam-modulation effect of the lung can thus be taken into account in treatment planning by recalculating the dose n times for n randomized CTs using the raster scan file of a plan that was optimized on the nonmodulated CT. The evaluation follows by averaging the resulting n dose distributions and comparing to the corresponding nonmodulated dose distribution, attending at dosimetric indices and dose-volume histograms. In this work, the functionality of these routines was tested for proton and carbon ion plans for two selected lung cancer patient cases with deep-seated tumors, showing that, with existing standard tools, it is possible to calculate the beam-modulation effect of the lung in TRiP98 in a transparent way. Variable model parameters, such as modulation power, voxel size and density voxel selection range, were evaluated. Furthermore, a systematic study for spherical geometries in a lung tissue CT cube is presented to investigate general trends.
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- 2020
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13. Proton scanning and X-ray beam irradiation induce distinct regulation of inflammatory cytokines in a preclinical mouse model
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Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Swakon, Jan, Olko, Pawel, Horsman, Michael R., Sørensen, Brita Singers, Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Swakon, Jan, Olko, Pawel, Horsman, Michael R., and Sørensen, Brita Singers
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Purpose: Conventional X-ray radiotherapy induces a pro-inflammatory response mediated by altered expression of inflammation-regulating cytokines. Proton scanning and X-ray irradiation produce distinct changes to cytokine gene expression in vitro suggesting that proton beam therapy may induce an inflammatory response dissimilar to that of X-ray radiation. The purpose of the present study was to determine whether proton scanning beam radiation and conventional X-ray photon radiation would induce differential regulation of circulating cytokines in vivo. Materials and methods: Female CDF1 mice were irradiated locally at the right hind leg using proton pencil beam scanning or X-ray photons. Blood samples were obtained from two separate mice groups. Samples from one group were drawn by retro-orbital puncture 16 months post irradiation, while samples from the other group were drawn 5 and 30 days post irradiation. Concentration of the cytokines IL-6, IL-1 beta, IL-10, IL-17A, IFN-gamma, and TNF alpha was measured in plasma using bead-based immunoassays. Results: The cytokines IL-6, IL-1 beta, IL-10, IFN-gamma, and TNF alpha were expressed at lower levels in plasma samples from proton-irradiated mice compared with X-ray-irradiated mice 16 months post irradiation. The same cytokines were downregulated in proton-irradiated mice 5 days post irradiation when compared to controls, while at day 30 expression had increased to the same level or higher. X-ray radiation did not markedly change expression levels at days 5 and 30. Conclusions: The inflammatory response to proton and X-ray irradiation seem to be distinct as the principal pro-inflammatory cytokines are differentially regulated short- and long-term following irradiation. Both the development of normal tissue damage and efficacy of immunotherapy could be influenced by an altered inflammatory response to irradiation.
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- 2020
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14. Dose-rather than fluence-averaged LET should be used as a single-parameter descriptor of proton beam quality for radiochromic film dosimetry
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Resch, Andreas Franz, Heyes, Paul David, Fuchs, Hermann, Bassler, Niels, Georg, Dietmar, Palmans, Hugo, Resch, Andreas Franz, Heyes, Paul David, Fuchs, Hermann, Bassler, Niels, Georg, Dietmar, and Palmans, Hugo
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Purpose: The dose response of Gafchromic EBT3 films exposed to proton beams depends on the dose, and additionally on the beam quality, which is often quantified with the linear energy transfer (LET) and, hence, also referred to as LET quenching. Fundamentally different methods to determine correction factors for this LET quenching effect have been reported in literature and a new method using the local proton fluence distribution differential in LET is presented. This method was exploited to investigate whether a more practical correction based on the dose- or fluence-averaged LET is feasible in a variety of clinically possible beam arrangements. Methods: The relative effectiveness (RE) was characterized within a high LET spread-out Bragg peak (SOBP) in water made up by the six lowest available energies (62.4-67.5 MeV, configuration b(1)) resulting in one of the highest clinically feasible dose-averaged LET distributions. Additionally, two beams were measured where a low LET proton beam (252.7 MeV) was superimposed on b1, which contributed either 50% of the initial particle fluence or 50% of the dose in the SOBP, referred to as configuration b(2) and b(3), respectively. The proton LET spectrum was simulated with GATE/Geant4 at all measurement positions. The net optical density change differential in LET was integrated over the local proton spectrum to calculate the net optical density and therefrom the beam quality correction factor. The LET dependence of the film response was accounted for by an LET dependence of one of the three parameters in the calibration function and was determined from inverse optimization using measurement b(1). This method was then validated on the measurements of b(2) and b(3) and subsequently used to calculate the RE at 900 positions in nine clinically relevant beams. The extrapolated RE set was used to derive a simple linear correction function based on dose-averaged LET (L-d) and verify the validity in all points of the comprehensive RE
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- 2020
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15. Mapping initial and general recombination in scanning proton pencil beams
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Christensen, J. B., Almhagen, E., Stolarczyk, L., Liszka, M., Hernandez, G. G., Bassler, Niels, Nørrevang, O., Vestergaard, A., Christensen, J. B., Almhagen, E., Stolarczyk, L., Liszka, M., Hernandez, G. G., Bassler, Niels, Nørrevang, O., and Vestergaard, A.
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The ion recombination is examined in parallel-plate ionization chambers in scanning proton beams at the Danish Centre for Particle Therapy and the Skandion Clinic. The recombination correction factor k(s) is investigated for clinically relevant energies between 70 MeV and 244 MeV for dose rates below 400 Gy min(-1) in air. The Boutillon formalism is used to separate the initial and general recombination. The general recombination is compared to predictions from the numerical recombination code IonTracks and the initial recombination to the Jaffe theory. k(s) is furthermore calculated with the two-voltage method (TVM) and extrapolation approaches, in particular the recently proposed three-voltage (3VL) method. The TVM is in agreement with the Boutillon method and IonTracks for dose rates above 100 Gy min(-1). However, the TVM calculated k(s) is closer related to the Jaffe theory for initial recombination for lower dose rate, indicating a limited application in scanning light ion beams. The 3VL is in turn found to generally be in agreement with Boutillon's method. The recombination is mapped as a function of the dose rate and proton energy at the two centres using the Boutillon formalism: the initial recombination parameter was found to be A = (0.10 +/- 0.01) V at DCPT and A = (0.22 +/- 0.13) V at Skandion, which is in better agreement with the Jaffe theory for initial recombination than previously reported values. The general recombination parameter was estimated to m2=(4.7 +/- 0.1).103V2nA-1cm-1m2=(7.2 +/- 0.1).103V2nA-1cm-1
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- 2020
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16. Mapping initial and general recombination in scanning proton pencil beams
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Christensen, Jeppe Brage, Almhagen, Erik, Stolarczyk, Liliana, Liszka, Małgorzata, Hernandez, Guillermo Garrido, Bassler, Niels, Nørrevang, Ole, Vestergaard, Anne, Christensen, Jeppe Brage, Almhagen, Erik, Stolarczyk, Liliana, Liszka, Małgorzata, Hernandez, Guillermo Garrido, Bassler, Niels, Nørrevang, Ole, and Vestergaard, Anne
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The ion recombination is examined in parallel-plate ionization chambers in scanning proton beams at the Danish Centre for Particle Therapy and the Skandion Clinic. The recombination correction factorksis investigated for clinically relevant energies between 70 MeV and 224 MeV for dose rates below 400 Gy/min in air. The Boutillon formalism is used to separate the initial and general recombination. The general recombination is compared to predictions from the numerical recombination code IonTracks and the initial recombination to the Jaffé theory.ksis furthermore calculated with the two-voltage method (TVM) and extrapolation approaches, in particular the recently proposed three-voltage (3VL) method.. The TVM is in agreement with the Boutillon method and IonTracks for dose rates above 100 Gy/min. However, the TVM calculatedksis closer related to the Jaffé theory for initial recombination for lower dose rate, indicating a limited application in scanning light ion beams. The 3VL is in turn found to generally be in agreement with Boutillon's method. The recombination is mapped as a function of the dose rate and proton energy at the two centres using the Boutillon formalism: the initial recombination parameter was found to beA=(0.10±0.01) V at DCPT andA=(0.22±0.13) V at Skandion, which is in better agreement with the Jaffé theory for initial recombination than previously reported values. The general recombination parameter was estimated tom2= (4.7±0.1)×103V2nA-1cm-1andm2= (7.2±0.1)×103V2nA-1cm-1. Furthermore, the numerical algorithm IonTracks is demonstrated to correctly predict the initial recombination at low dose rates and general recombination at high dose rates.
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- 2020
17. Calculation of the Beam-Modulation Effect of the Lung in Carbon Ion and Proton Therapy With Deterministic Pencil Beam Algorithms
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Ringbæk, Toke Printz, primary, Santiago, Alina, additional, Grzanka, Leszek, additional, Baumann, Kilian, additional, Flatten, Veronika, additional, Engenhart-Cabillic, Rita, additional, Bassler, Niels, additional, Zink, Klemens, additional, and Weber, Uli, additional
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- 2020
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18. Ionization quenching in scintillators used for dosimetry of mixed particle fields
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Christensen, Jeppe Brage, Almhagen, Erik, Stolarczyk, Liliana, Vestergaard, Anne, Bassler, Niels, Andersen, Claus E., Christensen, Jeppe Brage, Almhagen, Erik, Stolarczyk, Liliana, Vestergaard, Anne, Bassler, Niels, and Andersen, Claus E.
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Ionization quenching in ion beam dosimetry is often related to the fluence- or dose-averaged linear energy transfer (LET). Both quantities are however averaged over a wide LET range and a mixed field of primary and secondary ions. We propose a novel method to correct the quenched luminescence in scintillators exposed to ion beams. The method uses the energy spectrum of the primaries and accounts for the varying quenched luminescence in heavy, secondary ion tracks through amorphous track structure theory. The new method is assessed against more traditional approaches by correcting the quenched luminescence response from the BCF-12, BCF-60, and 81-0084 plastic scintillators exposed to a 100 MeV pristine proton beam in order to compare the effects of the averaged LET quantities and the secondary ions. Calculations and measurements show that primary protons constitute more than 92% of the energy deposition but account for more than 95% of the luminescence signal in the scintillators. The quenching corrected luminescence signal is in better agreement with the dose measurement when the secondary particles are taken into account. The Birks model provided the overall best quenching corrections, when the quenching corrected signal is adjusted for the number of free model parameters. The quenching parameter kB for the BCF-12 and BCF-60 scintillators is in agreement with literature values and was found to be kB = (10.6 +/- 0.1) x 10(-2) mu m keV(-1) for the 81-0084 scintillator. Finally, a fluence threshold for the 100 MeV proton beam was calculated to be of the order of 10(10) cm(-2), corresponding to 110 Gy, above which the quenching increases non-linearly and the Birks model no longer is applicable.
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- 2019
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19. Comparison of Coding Transcriptomes in Fibroblasts Irradiated With Low and High LET Proton Beams and Cobalt-60 Photons
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Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Laursen, Louise, Swakon, Jan, Olko, Pawel, Andreassen, Christian Nicolaj, Alsner, Jan, Sørensen, Brita Singers, Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Laursen, Louise, Swakon, Jan, Olko, Pawel, Andreassen, Christian Nicolaj, Alsner, Jan, and Sørensen, Brita Singers
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Purpose: To identify differential cellular responses after proton and photon irradiation by comparing transcriptomes of primary fibroblasts irradiated with either radiation type. Methods and Materials: A panel of primary dermal fibroblast cultures was irradiated with low and higher linear energy transfer (LET) proton beams. Cobalt-60 photon irradiation was used as reference. Dose was delivered in 3 fractions of 3.5 Gy (relative biological effectiveness) using a relative biological effectiveness of 1.1 for proton doses. Cells were harvested 2 hours after the final fraction was delivered, and RNA was purified. RNA sequencing was performed using Illumina NextSeq 500 with high-output kit. The edgeR package in R was used for differential gene expression analysis. Results: Pairwise comparisons of the transcriptomes in the 3 treatment groups showed that there were 84 and 56 differentially expressed genes in the low LET group compared with the Cobalt-60 group and the higher LET group, respectively. The higher LET proton group and the Cobalt-60 group had the most distinct transcriptome profiles, with 725 differentially regulated genes. Differentially regulated canonical pathways and various regulatory factors involved in regulation of biological mechanisms such as inflammation, carcinogenesis, and cell cycle control were identified. Conclusions: Inflammatory regulators associated with the development of normal tissue complications and malignant transformation factors seem to be differentially regulated by higher LET proton and Cobalt-60 photon irradiation. The reported transcriptome differences could therefore influence the progression of adverse effects and the risk of developing secondary cancers.
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- 2019
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20. THE ROLE OF PARTICLE SPECTRA IN MODELING THE RELATIVE BIOLOGICAL EFFECTIVENESS OF PROTON RADIOTHERAPY BEAMS
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Grzanka, Leszek, Waligórski, Michael P. R., Bassler, Niels, Grzanka, Leszek, Waligórski, Michael P. R., and Bassler, Niels
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Radiotherapy beams of protons or heavier ions generate secondary particles through nuclear interactions over different patient tissues. The resulting particle spectra depend on the tissue composition and on charge and energy of the primary beam ions. In proton radiotherapy, predictive radiobiological models usually apply dose-averaged linear energy transfer (LET). Microdosimetry-based models for proton or heavier ion primary beams also rely on dose-averaged quantities, the values of which depend on whether the produced secondaries are included or excluded in the calculation. In turn, this will affect the results of calculations of the relative biological effectiveness (RBE) of these beams. In this brief note, we study quantitatively the influence of the secondary radiation spectra on the averaged expectation values of LET and their impact on predictions of RBE. It is noted that for microdosimetry-based quantities and for corresponding LET-based parameters the trends are similar and that fluence-averaged quantities should be studied more closely.
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- 2019
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21. Quantitative evaluation of potential irradiation geometries for carbon-ion beam grid therapy
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Tsubouchi, Toshiro, Henry, Thomas, Ureba, Ana, Valdman, Alexander, Bassler, Niels, Siegbahn, Albert, Tsubouchi, Toshiro, Henry, Thomas, Ureba, Ana, Valdman, Alexander, Bassler, Niels, and Siegbahn, Albert
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Purpose: Radiotherapy using grids containing cm-wide beam elements has been carried out sporadically for more than a century. During the past two decades, preclinical research on radiotherapy with grids containing small beam elements, 25 m-0.7 mm wide, has been performed. Grid therapy with larger beam elements is technically easier to implement, but the normal tissue tolerance to the treatment is decreasing. In this work, a new approach in grid therapy, based on irradiations with grids containing narrow carbon-ion beam elements was evaluated dosimetrically. The aim formulated for the suggested treatment was to obtain a uniform target dose combined with well-defined grids in the irradiated normal tissue. The gain, obtained by crossfiring the carbon-ion beam grids over a simulated target volume, was quantitatively evaluated. Methods: The dose distributions produced by narrow rectangular carbon-ion beams in a water phantom were simulated with the PHITS Monte Carlo code. The beam-element height was set to 2.0 cm in the simulations, while the widths varied from 0.5 to 10.0 mm. A spread-out Bragg peak (SOBP) was then created for each beam element in the grid, to cover the target volume with dose in the depth direction. The dose distributions produced by the beam-grid irradiations were thereafter constructed by adding the dose profiles simulated for single beam elements. The variation of the valley-to-peak dose ratio (VPDR) with depth in water was thereafter evaluated. The separation of the beam elements inside the grids were determined for different irradiation geometries with a selection criterion. Results: The simulated carbon-ion beams remained narrow down to the depths of the Bragg peaks. With the formulated selection criterion, a beam-element separation which was close to the beam-element width was found optimal for grids containing 3.0-mm-wide beam elements, while a separation which was considerably larger than the beam-element width was found advantageous for grids
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- 2018
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22. Computational models and tools
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Schuemann, Jan, Bassler, Niels, Inaniwa, Taku, Schuemann, Jan, Bassler, Niels, and Inaniwa, Taku
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In this chapter, we describe two different methods, analytical (pencil beam) algorithms and Monte Carlo simulations, used to obtain the intended dose distributions in patients and evaluate their strengths and shortcomings. We discuss the difference between the prescribed physical dose and the biologically effective dose, the relative biological effectiveness (RBE) between ions and photons and the dependence of RBE on the linear energy transfer (LET). Lastly, we show how LET- or RBE-based optimization can be used to improve treatment plans and explore how the availability of multimodality ion beam facilities can be used to design a tumor-specific optimal treatment.
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- 2018
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23. CALIBRATION OF GAFCHROMIC EBT3 FILM FOR DOSIMETRY OF SCANNING PROTON PENCIL BEAM (PBS)
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Krzempek, D., Mianowska, G., Bassler, Niels, Stolarczyk, L., Kopeć, R., Sas-Korczyńska, B., Olko, P., Krzempek, D., Mianowska, G., Bassler, Niels, Stolarczyk, L., Kopeć, R., Sas-Korczyńska, B., and Olko, P.
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Gafchromic EBT3 films are applied in proton radiotherapy for 2D dose mapping because they demonstrate spatial resolution well below 1mm. However, the film response must be corrected in order to reach the accuracy of dose measurements required for the clinical use. The in-house developed AnalyseGafchromic software allows to analyze and correct the measured response using triple channel dose calibration, statistical scan-to-scan fluctuations as well as experimentally determined dose and LET dependence. Finally, the optimized protocol for evaluation of response of Gafchromic EBT3 films was applied to determine 30 x 40 cm(2) dose profiles of the scanning therapy unit at the Cyclotron Centre Bronowice, CCB in Krakow, Poland.
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- 2018
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24. MONTE CARLO SIMULATIONS OF SPATIAL LET DISTRIBUTIONS IN CLINICAL PROTON BEAMS
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Grzanka, Leszek, Ardenfors, Oscar, Bassler, Niels, Grzanka, Leszek, Ardenfors, Oscar, and Bassler, Niels
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The linear energy transfer (LET) is commonly used as a parameter which describes the quality of the radiation applied in radiation therapy with fast ions. In particular in proton therapy, most models which predict the radiobiological properties of the applied beam, are fitted to the dose-averaged LET, LETd. The related parameter called the fluence-or track-averaged LET, LETt, is less frequently used. Both LETt and in particular LETd depends profoundly on the encountered secondary particle spectrum. For proton beams including all secondary particles, LETd may reach more than 3 keV/um in the entry channel of the proton field. However, typically the charged particle spectrum is only averaged over the primary and secondary protons, which is in the order of 0.5 keV/um for the same region. This is equal to assuming that the secondary particle spectrum from heavier ions is irrelevant for the resulting radiobiology, which is an assertion in the need of closer investigation. Models which rely on LETd should also be clear on what type of LETd is used, which is not always the case. Within this work, we have extended the Monte Carlo particle transport code SHIELD-HIT12A to provide dose-and track-average LET-maps for ion radiation therapy treatment plans.
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- 2018
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25. Validation of new 2D ripple filters in proton treatments of spherical geometries and non-small cell lung carcinoma cases
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Ringbaek, Toke Printz, Weber, Uli, Santiago, Alina, Iancu, Gheorghe, Wittig, Andrea, Grzanka, Leszek, Bassler, Niels, Engenhart-Cabillic, Rita, Zink, Klemens, Ringbaek, Toke Printz, Weber, Uli, Santiago, Alina, Iancu, Gheorghe, Wittig, Andrea, Grzanka, Leszek, Bassler, Niels, Engenhart-Cabillic, Rita, and Zink, Klemens
- Abstract
A ripple filter (RiFi) is a passive energy modulator used in scanned particle therapy to broaden the Bragg peak, thus lowering the number of accelerator energies required for homogeneous target coverage, which significantly reduces the irradiation time. As we have previously shown, a new 6 mm thick RiFi with 2D groove shapes produced with 3D printing can be used in carbon ion treatments with a similar target coverage and only a marginally worse planning conformity compared to treatments with in-use 3 mm thick RiFis of an older 1D design. Where RiFis are normally not used with protons due to larger scattering and straggling effects, this new design would be beneficial in proton therapy too. Measurements of proton Bragg curves and lateral beam profiles were carried out for different RiFi designs and thicknesses as well as for no RiFi at the Heidelberg lonenstrahl-Therapiezentrum. Base data for proton treatment planning were generated with the Monte Carlo code SHIELD-HIT12A with and without the 2D 6 mm RiFi. Plans on spherical targets in water were calculated with TRiP98 for a systematic RiFi performance analysis and for comparisons with carbon ion plans for the same respective energy depth step sizes. Plans for 9 stage I static non small cell lung cancer patients were calculated with Eclipse 13.7.15. Dose-volume-histograms, spatial dose distributions and dosimetric indexes were used for plan evaluation. Measurements confirm the functionality of the new 2D RiFi design, which reduces the beam spot size compared to 1D RiFis of the same thickness. Planning studies show that a 6 mm thick 2D RiFi could be used in proton therapy to lower the irradiation time. Although slightly worse planning conformity and dose homogeneity were found for plans with the RiFi compared to plans without, satisfactory results within the planning objective were obtained for all cases.
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- 2018
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26. Development of an interlaced-crossfiring geometry for proton grid therapy
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Thomas, Henry, Bassler, Niels, Ureba, Ana, Tsubouchi, Toshiro, Valdman, Alexander, Siegbahn, Albert, Thomas, Henry, Bassler, Niels, Ureba, Ana, Tsubouchi, Toshiro, Valdman, Alexander, and Siegbahn, Albert
- Abstract
Background: Grid therapy has in the past normally been performed with single field photon-beamgrids. In this work, we evaluated a method to deliver grid therapy based on interlacing and crossfiringgrids of mm-wide proton beamlets over a target volume, by Monte Carlo simulations. Material and methods: Dose profiles for single mm-wide proton beamlets (1, 2 and 3 mm FWHM) inwater were simulated with the Monte Carlo code TOPAS. Thereafter, grids of proton beamlets weredirected toward a cubic target volume, located at the center of a water tank. The aim was to deliver anearly homogeneous dose to the target, while creating high dose heterogeneity in the normal tissue,i.e., high gradients between valley and peak doses in the grids, down to the close vicinity of thetarget. Results: The relative increase of the beam width with depth was largest for the smallest beams(þ6.9mm for 1 mm wide and 150MeV proton beamlets). Satisfying dose coverage of the cubic targetvolume (r< ±5%) was obtained with the interlaced-crossfiring setup, while keeping the grid pattern ofthe dose distribution down to the target (valley-to-peak dose ratio<0.5 less than 1 cm before the tar-get). Center-to-center distances around 7–8 mm between the beams were found to give the best com-promise between target dose homogeneity and low peak doses outside of the target. Conclusions: A nearly homogeneous dose distribution can be obtained in a target volume by crossfir-ing grids of mm-wide proton-beamlets, while maintaining the grid pattern of the dose distribution atlarge depths in the normal tissue, close to the target volume. We expect that the use of this methodwill increase the tumor control probability and improve the normal tissue sparing in grid therapy.
- Published
- 2017
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27. Chemically tuned linear energy transfer dependent quenching in a deformable, radiochromic 3D dosimeter
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Høye, Ellen Marie, Skyt, Peter S., Balling, Peter, Muren, Ludvig P., Taasti, Vicki T., Swakoń, Jan, Mierzwińska, Gabriela, Rydygier, Marzena, Bassler, Niels, Petersen, Jørgen B. B., Høye, Ellen Marie, Skyt, Peter S., Balling, Peter, Muren, Ludvig P., Taasti, Vicki T., Swakoń, Jan, Mierzwińska, Gabriela, Rydygier, Marzena, Bassler, Niels, and Petersen, Jørgen B. B.
- Abstract
Most solid-state detectors, including 3D dosimeters, show lower signal in the Bragg peak than expected, a process termed quenching. The purpose of this study was to investigate how variation in chemical composition of a recently developed radiochromic, silicone-based 3D dosimeter influences the observed quenching in proton beams. The dependency of dose response on linear energy transfer, as calculated through Monte Carlo simulations of the dosimeter, was investigated in 60 MeV proton beams. We found that the amount of quenching varied with the chemical composition: peak-to-plateau ratios (1 cm into the plateau) ranged from 2.2 to 3.4, compared to 4.3 using an ionization chamber. The dose response, and thereby the quenching, was predominantly influenced by the curing agent concentration, which determined the dosimeter's deformation properties. The dose response was found to be linear at all depths. All chemical compositions of the dosimeter showed dose-rate dependency; however this was not dependent on the linear energy transfer. Track-structure theory was used to explain the observed quenching effects. In conclusion, this study shows that the silicone-based dosimeter has potential for use in measuring 3D-dose-distributions from proton beams.
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- 2017
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28. Differential gene expression in primary fibroblasts induced by proton and cobalt-60 beam irradiation
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Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Swakon, Jan, Olko, Pawel, Andreassen, Christian Nicolaj, Overgaard, Jens, Alsner, Jan, Singers Sørensen, Brita, Nielsen, Steffen, Bassler, Niels, Grzanka, Leszek, Swakon, Jan, Olko, Pawel, Andreassen, Christian Nicolaj, Overgaard, Jens, Alsner, Jan, and Singers Sørensen, Brita
- Abstract
Introduction: Proton beam therapy delivers a more conformal dose distribution than conventional radiotherapy, thus improving normal tissue sparring. Increasing linear energy transfer (LET) along the proton track increases the relative biological effectiveness (RBE) near the distal edge of the Spread-out Bragg peak (SOBP). The severity of normal tissue side effects following photon beam radiotherapy vary considerably between patients. Aim: The dual study aim was to identify gene expression patterns specific to radiation type and proton beam position, and to assess whether individual radiation sensitivity influences gene expression levels in fibroblast cultures irradiated in vitro. Methods: The study includes 30 primary fibroblast cell cultures from patients previously classified as either radiosensitive or radioresistant. Cells were irradiated at three different positions in the proton beam profile: entrance, mid-SOBP and at the SOBP distal edge. Dose was delivered in three fractions × 3.5 Gy(RBE) (RBE 1.1). Cobalt-60 (Co-60) irradiation was used as reference. Real-time qPCR was performed to determine gene expression levels for 17 genes associated with inflammation response, fibrosis and angiogenesis. Results: Differences in median gene expression levels were observed for multiple genes such as IL6, IL8 and CXCL12. Median IL6 expression was 30%, 24% and 47% lower in entrance, mid-SOBP and SOBP distal edge groups than in Co-60 irradiated cells. No genes were found to be oppositely regulated by different radiation qualities. Radiosensitive patient samples had the strongest regulation of gene expression; irrespective of radiation type. Conclusions: Our findings indicate that the increased LET at the SOBP distal edge position did not generally lead to increased transcriptive response in primary fibroblast cultures. Inflammatory factors were generally less extensively upregulated by proton irradiation compared with Co-60 photon irradiation. These effects may possibly infl
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- 2017
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29. PyTRiP - a toolbox and GUI for the proton/ion therapy planning system TRiP
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Toftegaard, Jakob, Petersen, Jørgen B.B., and Bassler, Niels
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treatment planning ,particle therapy - Published
- 2014
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30. Improvements in the stopping power library libdEdx and release of the web GUI dedx.au.dk
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Toftegaard, Jakob, Lühr, Armin, Sobolevsky, Nikolai, and Bassler, Niels
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stopping power - Abstract
Purpose: In ion beam therapy electronic stopping power data enter in differentdisciplines, e.g., dose planning, dosimetry, and radiobiology. However, relevant stopping power data are only known within an accuracy of 2%-10%. We started the software library project libdEdx to unify data from several well-known stopping power sources into one ready-to-use package being 1) freely available and 2) easy accessible via a web-based front end.Methods: Currently, stopping power data from PSTAR, ASTAR, MSTAR and ICRU49+73are implemented along with a version of the Bethe formula. The library is programmed in the language C to provide broad portability and high performance. A clean API provides full access to the underlying functions and thread safety in multi-threaded applications. The possibility to define arbitrary materials complements the list of predefined ICRU materials. Furthermore, we introduced a collection of tools, e.g., inverse stopping power look-up as well as CSDA range calculation and its inverse.Results: On a standard desktop PC libdEdx calculates 22 million look-ups/sec. A web GUI (available at http://dedx.au.dk) provides easy access to libdEdx and download of stopping data and graphs. For compounds, we observe that stopping power data are robust for variations in the mean excitation potential of the constituents as long as the total mean excitation potential is fixated.Conclusion: We released libdEdx (version number 1.2.1: http://sf.net/projects/libdedx/) with a web-based GUI. Future development will focus on implementing furtherstopping powers sources (e.g., for electrons and nuclear stopping) and relativistic effects.
- Published
- 2014
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31. Ion Stopping Powers and Ranges Whenever You Need Them
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Bassler, Niels, Christensen, Casper, and Tørresø, Jesper Rosholm
- Abstract
A new app "Electronic Stopping Power" for Android mobile phones and tablets, looks up stopping powers using the ICRU 49 (protons and alphas) and the revised ICRU 73 (lithium and heavier ions) tables. In addition, also MSTAR and an implementation of the Bethe equation expanded to low energies are available. The app knows all ICRU materials, and automatically expands the ICRU table and MSTAR data using Bragg's additivity rule when possible.Ion ranges are calculated using the continuous slowing down approximation (CSDA), including inverse lookups, i.e. one can determine what projectile energy is needed for a given ion range in a given material.The app is available on Google Play for free, and does only require SD-card storage access for saving the stopping power tables. No network connection is needed, making the app usable even when in WiFi free zones.The app is based on the stopping power library libdEdx, which is hosted on http://sourceforge.net/projects/libdedx/. Both the app and the libdEdx library are open source (GPL) and developed by the Aarhus Particle Therapy Group.Free download:https://play.google.com/store/apps/details?id=dk.au.aptg.dEdx
- Published
- 2014
32. Monte Carlo simulations of new 2D ripple filters for particle therapy facilities
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Ringbæk, Toke Printz, Weber, Uli, Petersen, Jørgen B., Thomsen, Bjarne, and Bassler, Niels
- Abstract
At particle therapy facilities with pencil beam scanning, the implementation of a ripple filter (RiFi) broadens the Bragg peak (BP), which leads to fewer energy steps from the accelerator required to obtain an homogeneous dose coverage of the planned target volume (PTV). At the Universitätsklinikum Gießen und Marburg, Germany, a new second generation RiFi has been developed with two-dimensional groove structures. In this work we evaluate this new RiFi design. Methods: The Monte Carlo (MC) code SHIELD-HIT12A is used to determine the RiFi-induced inhomogeneities in the dose distribution for various ion types, initial particle energies and distances from the RiFi to the phantom surface as well as in the depth of the phantom. The beam delivery and monitor system (BAMS) used at Marburg, the Heidelberg Ionentherapiezentrum (HIT), Universitätsklinikum Heidelberg, Germany and the GSI Helmholtzzentrum für Schwerionenforschung, Darmstadt, Germany is modeled and simulated. To evaluate the PTV dose coverage performance of the new RiFi design, the heavy ion treatment planning system TRiP98 is used for dose optimization. SHIELD-HIT12A is used to prepare the facility-specific physical dose kernels needed by TRiP, and for recalculating the physical dose distribution after TRiP optimization. Results: At short distances from the RiFi to the phantom surface fine structures in the dose distribution are observed. For various RiFis, ion types and initial particle energies the distance dmax at which maximum dose inhomogeneity occurs is found and an expression for dmax is deduced. The distance d0.01 at which the dose inhomogeneity is less than 1% is estimated and used as a threshold distance at which dose distributions are considered homogeneous. The MC data are found to agree with analytical expressions for dmax and d0.01; both are inversely related to the angular distribution. Increasing scatter from the beam delivery and monitoring system results in reduced dmax and d0.01. Furthermore, dmax and d0.01 are found to be proportional to the RiFi period λ. Conclusion: Our findings clearly indicate that the dose inhomogeneity induced by RiFis does not add uncertainties to the dose distribution in the clinical setting. The new RiFi design can be used in treatments to obtain homogeneous PTV dose coverage with fewer energy steps while improving lateral penumbra, thereby reducing the required treatment time.
- Published
- 2014
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33. A study of V79 cell survival after for proton and carbon ion beams as represented by the parameters of Katz' track structure model
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Grzanka, Leszek, Waligórski, M. P. R., and Bassler, Niels
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particle therapy ,radiobiology - Abstract
Katz’s theory of cellular track structure (1) is an amorphous analytical model which applies a set of four cellular parameters representing survival of a given cell line after ion irradiation. Usually the values of these parameters are best fitted to a full set of experimentally measured survival curves available for a variety of ions. Once fitted, using these parameter values and the analytical formulae of the model calculations, cellular survival curves and RBE may be predicted for that cell line after irradiation by any ion, including mixed ion fields. While it is known that the Katz model parameters fitted to heavier ion data may yield unsatisfactory predictions of proton response, to our knowledge, no comprehensive data set which includes proton and heavier ion irradiations, measured in one laboratory, has been published. To study the consistency of evaluating parameters of this model from different sets of data obtained for the same cell line and different ions, measured at different laboratories, we have fitted model parameters to a set of carbon-irradiated V79 cells, published by Furusawa et al. (2), and to a set of proton-irradiated V79 cells, published by Wouters et al. (3), separately. We found that values of model parameters best fitted to the carbon data of Furusawa et al. yielded predictions of V79 survival after proton irradiation which did not match the V79 proton data of Wouters et al. Fitting parameters to both sets combined did not improve the accuracy of model predictions of the proton response. This suggests that for increased accuracy of a therapy planning system based on Katz’s model, different sets of parameters may need to be used to represent cell survival after proton irradiation from those representing survival of this cell line after heavier ions, up to and including carbon irradiation.1. Katz, R., Track structure in radiobiology and in radiation detection. Nuclear Track Detection 2: 1-28 (1978).2. Furusawa Y. et al. Inactivation of aerobic and hypoxic cells from three different cell lines by accelerated 3He-, 12C- and 20Ne beams. Radiat Res. 2012 Jan; 177(1):129-31.3. Wouters BG et al. Measurements of relative biological effectiveness of the 70 MeV proton beam at TRIUMF using Chinese hamster V79 cells and the high precision cell sorter assay. Radiat Res.1996 Aug. 146(2): 159-170.
- Published
- 2014
34. SHIELD-HIT12A - a Monte Carlo particle transport program for ion therapy research
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Bassler, Niels, Hansen, David Christoffer, Lühr, Armin, Thomsen, Bjarne, Petersen, Jørgen B.B., and Sobolevsky, Nikolai
- Subjects
particle therapy ,Monte Carlo simulation - Abstract
Purpose: The Monte Carlo (MC) code SHIELD-HIT simulates the transport of ions through matter. Since SHIELD-HIT08 we added numerous features that improves speed, usability and underlying physics and thereby the user experience. The “-A” fork of SHIELD-HIT also aims to attach SHIELD-HIT to a heavy ion dose optimization algorithm to provide MC-optimized treatment plans that include radiobiology.Methods: SHIELD-HIT12A is written in FORTRAN and carefully retains platform independence. A powerful scoring engine is implemented scoring relevant quantities such as dose and track-average LET. It supports native formats compatible with the heavy ion treatment planning system TRiP. Stopping power files follow ICRU standard and are generated using the libdEdx library, which allows the user to choose from a multitude of stopping power tables.Results: SHIELD-HIT12A runs on Linux and Windows platforms. We experienced that new users quickly learn to use SHIELD-HIT12A and setup new geometries. Contrary to previous versions of SHIELD-HIT, the 12A distribution comes along with easy-to-use example files and an English manual. A new implementation of Vavilov straggling resulted in a massive reduction of computation time. Scheduled for later release are CT import and photon-electron transport.Conclusions: SHIELD-HIT12A is an interesting alternative ion transport engine. Apart from being a flexible particle therapy research tool, it can also serve as a back end for a MC ion treatment planning system. More information about SHIELD-HIT12A and a demo version can be found on http://www.shieldhit.org .
- Published
- 2014
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35. An Update on the Depth-Dose Curve of Antiprotons
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Taasti, Vicki Trier, Holzscheiter, Michael H., Knudsen, Helge, and Bassler, Niels
- Abstract
Purpose:The CERN AD-4/ACE project aims to measure the relative biological effectiveness of antiprotons. We have revisited previously published data for the antiproton depth-dose curve [1], where the relative dose deposition normalized to a point in the plateau region was plotted. In this revision we refine the experimental set-up to obtain absolute dose per primary particle, and compare these with simulations.Materials and Methods:Scrutinizing the geometrical setup, we could calculate beam scattering along the antiproton beam, which enables replotting the depth-dose curve as absolute dose in water. The experimental results are compared with the Monte Carlo particle transport code SHIELD-HIT12A.Contrary to [1], here the full ionization chamber is simulated and the dose is scored in the ionization chamber air gap. Stopping power ratios are determined as well in order to translate the simulated dose to dose-to-water formalism.Results: Generally, the experimental data are in good agreement with the simulated dose on an absolute scale in the plateau region. However some deviations are found near the annihilation peak. A full geometric description of the ionization chamber simulation improves the situation, in particular on the upstream side of the Bragg-peak. This is attributed to a different spectrum of annihilation products created in the entrance window of the ionization chamber in comparison to the case of simply simulating annihilation taking place on water.Yet, a large portion of dose still is missing in the Bragg-peak. This effect is also visible in the tail where the dose is underestimated in both types of simulations because of the missing annihilation energy/products. Conclusions:The shape of the Bragg-peak has some dependence on what material the antiprotons is annihilating on. Precise modelling of the detector is therefore inevitable. The missing energy in the annihilation peak remains to be explained, but may be related to an overestimation of inelastic cross sections of the antiprotons.[1] Bassler, N., et al., The antiproton depth-dose curve in water, Phys. Med. Biol. 53 (2008), 793.
- Published
- 2014
36. Improvements in the stopping power library libdEdx and release of the web GUI dedx.au.dk
- Author
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Toftegaard, Jakob, Lühr, Armin, and Bassler, Niels
- Published
- 2012
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37. Monte Carlo particle transport with SHIELD-HIT12A: What is new?
- Author
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Bassler, Niels, Lühr, Armin, Hansen, David Christoffer, Petersen, Jørgen B.B., and Sobolevsky, Nikolai
- Published
- 2012
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38. Hypoxia, Radiosensitizers and high-LET radiation - Nimorazole fragmentation using mass spectrometry
- Author
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Feketeova, Linda and Bassler, Niels
- Abstract
Purpose(s):Radiosensitizers are commonly used in radiotherapy in Denmark (following the DAHANCA 5 clinical trail) to enhance tumour control of radioresistant hypoxic tumours. Radiosensitizers implemented particularly in the treatment of hypoxic cells are called ‘electron-affinic’ radiosensitizers. A number of nitroimidazoles and related compounds were studied in vitro as well as in vivo, partially also with high-LET beams with encouraging results. However, the detailed mechanism of the actual radiosensitization is still unknown. The work presented here investigates the fragmentation of nimorazole using mass spectrometry. Understanding the fragmentation of radiosensitizers is crucial in evaluating the radiosensitization potential and developing new and more effective drugs, which may improve TCP in hypoxic tumours when using ion beams such as carbon-12 along with LET-painting techniques.Method(s):Fragmentation experiments have been performed using a Finnigan- LTQ-FT mass spectrometer equipped with an electrospray ionisation source. Collision-induced dissociation (CID) and electron-induced dissociation (EID) have been carried out by mass selecting the desired ions and subjecting them to activation energy in the linear trap and to free electrons of 25.8 eV in the FT-ICR cell. We have examined CID and EID of protonated nimorazole and CID of nimorazole radical anion.Result(s):Electrospray ionisation of a nimorazole in positive mode readily forms the protonated nimorazole [M+H]+. CID spectrum of [M+H]+ (Figure 1a) shows the major fragment to be an ion of m/z 114, which corresponds to the loss of the nitroimidazole ring. Although this fragment is also observed in the EID spectrum (Figure 1b), the dominant fragment here is m/z 110, due to the loss of nitroimidazole ring and CH2 group. In both spectra, a minor loss of NO2 is present. In the case of negative ion electrospray, a radical anion of nimorazole M.- can be formed. CID of M.- generates amongst others the negatively charged nitroimidazole ring and a peak corresponding to a minor loss of NO.Conclusion(s):The fragmentation of nimorazole seems to depend on its charge state. This detailed gas-phase study will unlock its fragmentation mechanism and thus allow future potential for structural improvement.
- Published
- 2012
39. Nuclear Fragmentation in Clinical Heavy Ion Beams, Should We Worry?
- Author
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Bassler, Niels, Hansen, David Christoffer, Toftegaard, Jakob, Teiwes, Ricky, Sobolevsky, Nikolai, Jäkel, Oliver, and Lühr, Armin
- Abstract
Particle therapy with fast ions is increasingly applied as a treatment option for localized inoperable tumour sites. One of the reasons for the increased complications of understanding heavy ion dosimetry and radiobiology stems from the mixed particle spectrum which occurs due to nuclear fragmentation of the primary ions. Even if patient treatment with heavy ions has been established, the influence of nuclear fragmentation is yet to be fully quantified. The fragmentation spectrum of ions is relevant for particle therapy in numerous ways:1. Dose distribution: A distinct tail of secondary particles is formed beyond the Bragg-peak. This tail may deliver unwanted dose to normal tissue, however the magnitude of the tail is directly depending on the inelastic nuclear reaction cross sections.2. Dosimetrya. Stopping power ratios: Routine dosimetry is performed with air-filled ionization chambers. However, the dose is by convention expressed in dose relative to water. The link between these different ways of calculating dose is primarily provided by stopping power ratios, i.e. atomic physics, however since the average stopping powers are weighted by fluence, one might expect a weak dependence on the secondary particle spectrum from fragmentation. b. In addition hereto, fluence correction factors can be calculated which take this effect into account, which are directly a result of nuclear fragmentation in the medium.3. Radiobiology: Physical dose is not sufficient to describe the outcome of a treatment. The concept of relative biological effectiveness (RBE) translates the physical dose to a biological effective dose which is iso-effective to photon radiation. Radiobiological models based on amorphous track structure such as the Local Effect Model, but also microdosimetry based models both rely on a full description of the mixed particle spectrum found in a point. To date only little has been published about how much the secondary particle spectrum influences the radiobiology.Other effects which have not been investigated by us include the impact on the occurrence of secondary cancer arising from the secondary neutron spectrum in surrounding tissue, and the production of secondary radiation for retrospective (or online) treatment plan verification. We change essential parameters in the underlying nuclear models of the Monte Carlo particle transport code SHIELD-HIT10A, in order to quantify the sensitivity on the three fields mentioned above, including: turning off nuclear fragmentation entirely, changing all ineleastic cross sections +/- 20%, changing key parameters in the Fermi-Breakup (FB) model. Results show nuclear effects have their largest impact on the dose distribution. Stopping power ratios are entirely unaffected, fluence correction factors are merely in the order of 5% or less. Impact on the RBE is next to negligible, and is rather associated with the dependency of dose.
- Published
- 2012
40. Biological Effects of Antiprotons Are Antiprotons a Candidate for Cancer Therapy?
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Holzscheiter, M H, Holzscheiter, Michael, Alsner, Jan, Angelopoulos, Angelo, Bassler, Niels, Beyer, Gerd, Boll, Rebecca, Currell, Fred, DeMarco, John, Doser, Michael, Hajdukovic, Dragan, Hartley, Oliver, Iwamoto, Kei, Jäkel, Oliver, Kantemiris, Ioannis, Joachim Kaiser, Franz, Kavanagh, Joy, Knudsen, Helge, Keyes, Roy, Kovacevic, Sandra, Pape Møller, Søren, Overgaard, Jens, Petersen, Jørgen, Ratib, Osman, Rochus, Hermann, Schettino, Giuseppe, Sellner, Stefan, Tegami, Sara, Timson, David, Tölli, Heikki, Singers-Sørensen, Brita, Solberg, Timothy, Vranjes, Sanja, Welsch, Carsten, Weber, Patrick, and Wouters, Brad
- Subjects
Detectors and Experimental Techniques - Abstract
2009 Status Report of AD-4 Experiment
- Published
- 2010
41. Clinical oxygen enhancement ratio of tumors in carbon ion radiotherapy: the influence of local oxygenation changes
- Author
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Antonovic, Laura, Lindblom, Emely, Dasu, Alexandru, Bassler, Niels, Furusawa, Yoshiya, Toma-Dasu, Iuliana, Antonovic, Laura, Lindblom, Emely, Dasu, Alexandru, Bassler, Niels, Furusawa, Yoshiya, and Toma-Dasu, Iuliana
- Abstract
The effect of carbon ion radiotherapy on hypoxic tumors has recently been questioned because of low linear energy transfer (LET) values in the spread-out Bragg peak (SOBP). The aim of this study was to investigate the role of hypoxia and local oxygenation changes (LOCs) in fractionated carbon ion radiotherapy. Three-dimensional tumors with hypoxic subvolumes were simulated assuming interfraction LOCs. Different fractionations were applied using a clinically relevant treatment plan with a known LET distribution. The surviving fraction was calculated, taking oxygen tension, dose and LET into account, using the repairable–conditionally repairable (RCR) damage model with parameters for human salivary gland tumor cells. The clinical oxygen enhancement ratio (OER) was defined as the ratio of doses required for a tumor control probability of 50% for hypoxic and well-oxygenated tumors. The resulting OER was well above unity for all fractionations. For the hypoxic tumor, the tumor control probability was considerably higher if LOCs were assumed, rather than static oxygenation. The beneficial effect of LOCs increased with the number of fractions. However, for very low fraction doses, the improvement related to LOCs did not compensate for the increase in total dose required for tumor control. In conclusion, our results suggest that hypoxia can influence the outcome of carbon ion radiotherapy because of the non-negligible oxygen effect at the low LETs in the SOBP. However, if LOCs occur, a relatively high level of tumor control probability is achievable with a large range of fractionation schedules for tumors with hypoxic subvolumes, but both hyperfractionation and hypofractionation should be pursued with caution.
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- 2014
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42. Air filled ionization chambers and their response to high LET radiation
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Kaiser, Franz-Joachim, Bassler, Niels, Tölli, Heikki, and Jäkel, Oliver
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Computer Science::Hardware Architecture ,ddc: 610 ,610 Medical sciences ,Medicine - Abstract
Background: Air filled ionization chambers (ICs) are widely used for absolute dosimetry, not only in photon beams but also in beams of heavy charged particles. Within the IC, electron hole pairs are generated by the energy deposition originating from incoming radiation. High-LET particles create a high[for full text, please go to the a.m. URL], PTCOG 48; Meeting of the Particle Therapy Co-Operative Group
- Published
- 2009
43. Status Report for Experiment AD-4/ACE Biological Effectiveness of Antiproton Annihilation
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Holzscheiter, M H, Alsner, Jan, Angelopoulos, Angelo, Bassler, Niels, Beyer, Gerd, Currell, Fred, De Marco, John, Doser, Michael, Hajdukovic, Dragan, Hartley, Oliver, Kavanagh, Joy, Iwamoto, Kei, Jäkel, Oliver, Kantemiris, Ioannis, Knudsen, Helge, Kovacevic, Sandra, McBride, Bill, Møller, Søren Pape, Overgaard, Jens, Petersen, Jørgen, Ratib, Osman, Schettino, Giuseppe, Timson, David, Singers-Sørensen, Brita, Solberg, Timothy, Vranjes, Sanja, and Wouters, Brad
- Subjects
Detectors and Experimental Techniques - Abstract
Status report for experiment AD-4/ACE showing recent progress in RBE measurements for V79 Chinese Hamster cells irradiated with antiprotons. Also discussed are initial test experiments using the H2AX assay to study DNA damage to cells and initial experiments using liquid ionization chambers.
- Published
- 2009
44. Carbon beam dosimetry using VIP polymer gel and MRI
- Author
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Kantemiris, I, Petrokokkinos, L, Angelopoulos, A, Bassler, Niels, Seimenis, I, and Karaiskos, P
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carbon ions ,dosimetry ,particle therapy ,3D dosimetry - Abstract
VIP polymer gel dosimeter was used for Carbon ion beam dosimetry using a 150 MeV/n beam with 10 Gy plateau dose and a SOBP irradiation scheme with 5 Gy Bragg peak dose. The results show a decrease by 8 mm in the expected from Monte Carlo simulation range in water, suggesting that the dosimeter is non water equivalent. However VIP shows efficiency close to 1 in the plateau region and significantly reduced efficiency in the peak. On the otherhand the SOBP results yield an efficiency close to 1 in the SOBP implying that the dose response of the VIP dosimeter may not be solely related to LET.
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- 2009
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45. Amorphous track modelling of luminescence detector efficiency in proton and carbon beams
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Greilich, Steffen, Grzanka, Leszek, Bassler, Niels, Andersen, Claus E., and Jäkel, Oliver
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ddc: 610 ,fungi ,food and beverages ,partikelterapi ,610 Medical sciences ,Medicine - Abstract
Introduction: The radioluminescence (RL) and optically stimulated luminescence (OSL) response of Al2O3:C crystals attached to optical fibres can be used for active and passive in-vivo dosimetry in radiotherapy treatments and clinical imaging techniques. Their use in particle beams, however, can be seriously[for full text, please go to the a.m. URL], PTCOG 48; Meeting of the Particle Therapy Co-Operative Group
- Published
- 2009
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46. Status Report and Beam Time Request for Experiment AD-4
- Author
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Holzscheiter, M, Knudsen, Helge, Pape-Møller, Søren, Uggerhøj, U, Alsner, Jan, Bassler, Niels, Overgaard, Jens, Petersen, Jørgen, Doser, Michael, De Marco, John J, Iwamoto, Keisuke S, McBride, William H, Jäkel, Olivier, Beyer, Gerd-Jürgen, Hartley, Olivier, Ratib, Osman, Wouters, Bradly G, Hajdukovic, Dragan, Kovacevic, Sandra, Scepanovic, Danijela, Solberg, Timothy, and Vranjes, Sanja
- Subjects
Detectors and Experimental Techniques - Abstract
Summary of current status and plans for October 2007
- Published
- 2007
47. Status Report AD-4/ACE
- Author
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Holzscheiter, M H and Bassler, Niels
- Subjects
Detectors and Experimental Techniques - Published
- 2006
48. Initial recombination in the track of heavy charged particles : numerical solution for air filled ionization chambers
- Author
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Kaiser, Franz-Joachim, Bassler, Niels, Tölli, Heikki, Jäkel, Oliver, Kaiser, Franz-Joachim, Bassler, Niels, Tölli, Heikki, and Jäkel, Oliver
- Abstract
Introduction. Modern particle therapy facilities enable sub-millimeter precision in dose deposition. Here, also ionization chambers (ICs) are used, which requires knowledge of the recombination effects. Up to now, recombination is corrected using phenomenological approaches for practical reasons. In this study the effect of the underlying dose distribution on columnar recombination, a quantitative model for initial recombination, is investigated. Material and methods. Jaffé's theory, formulated in 1913 quantifies initial recombination by elemental processes, providing an analytical (closed) solution. Here, we investigate the effect of the underlying charged carrier distribution around a carbon ion track. The fundamental partial differential equation, formulated by Jaffé, is solved numerically taking into account more realistic charge carrier distributions by the use of a computer program (Gascoigne 3D). The investigated charge carrier distributions are based on track structure models, which follow a 1∕r(2) behavior at larger radii and show a constant value at small radii. The results of the calculations are compared to the initial formulation and to data obtained in experiments using carbon ion beams. Results. The comparison between the experimental data and the calculations shows that the initial approach made by Jaffé is able to reproduce the effects of initial recombination. The amorphous track structure based charge carrier distribution does not reproduce the experimental data well. A small additional correction in the assessment of the saturation current or charge is suggested by the data. Conclusion. The established model of columnar recombination reproduces the experimental data well, whereas the extensions using track structure models do not show such an agreement. Additionally, the effect of initial recombination on the saturation curve (i.e. Jaffé plot) does not follow a linear behavior as suggested by current dosimetry protocols, therefore higher order co
- Published
- 2012
- Full Text
- View/download PDF
49. Liquid ionization chambers for LET determination
- Author
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Kaiser, Franz-Joachim, Bassler, Niels, Tölli, Heikki, Jäkel, Oliver, Kaiser, Franz-Joachim, Bassler, Niels, Tölli, Heikki, and Jäkel, Oliver
- Abstract
Modern radiotherapy facilities for cancer treatment such as the Heavy Ion Therapy Centre (HIT) in Heidelberg (Germany) enable sub millimetre precision in dose deposition. For the measurement of such dose distributions and characterization of teh particle beams, detectors with high spatial resolution and high sensitivity are necessary. For exact dosimetry which is done using ionization chambers (ICs), the recombination taking place in the IC has to be known. Up to now, recombination is corrected phenomenologically and more practical approaches are currently used. Nevertheless, Jaffés theory of columnar recombination was designed to model the detector efficiency of an ionization chamber. Here, we have shown that despite the approximations and simplification made, the theory is correct for the LETs typically found in clinical radiotherapy employing particles from protons to carbon ions. As no exact closed solution is available, a numerical solver was programmed.
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- 2010
- Full Text
- View/download PDF
50. V-79 Chinese Hamster cells irradiated with antiprotons, a study of peripheral damage due to medium and long range components of the annihilation radiation
- Author
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Kovacevic, Sandra, Bassler, Niels, Hartley, Oliver, Knudsen, Helge V., Vranješ, Sanja, Garaj-Vrhovac, Vera, Holzscheiter, Michael H., Kovacevic, Sandra, Bassler, Niels, Hartley, Oliver, Knudsen, Helge V., Vranješ, Sanja, Garaj-Vrhovac, Vera, and Holzscheiter, Michael H.
- Abstract
Purpose: Radiotherapy of cancer carries a perceived risk of inducing secondary cancer and other damage due to dose delivered to normal tissue. While expectedly small, this risk must be carefully analysed for all modalities. Especially in the use of exotic particles like pions and antiprotons, which annihilate and produce a mixed radiation field when interacting with normal matter nuclei, the biological effective dose far out of field needs to be considered in evaluating this approach. We describe first biological measurements to address the concern that medium and long range annihilation products may produce a significant background dose and reverse any benefits of higher biological dose in the target area. Materials and methods: Using the Antiproton Decelerator (AD) at CERN (Conseil Europeen pour la Recherche Nucleaire) we irradiated V-79 Chinese Hamster cells embedded in gelatine using an antiproton beam with fluence ranging from 4.5 x 10(8) to 4.5 x 10(9) particles, and evaluated the biological effect on cells located distal to the Bragg peak using clonogenic survival and the COMET assay. Results: Both methods show a substantial biological effect on the cells in the entrance channel and the Bragg Peak area, but any damage is reduced to levels well below the effect in the entrance channel 15 mm distal to the Bragg peak for even the highest particle fluence used. Conclusions: The annihilation radiation generated by antiprotons stopping in biological targets causes an increase of the penumbra of the beam but the effect rapidly decreases with distance from the target volume. No major increase in the biological effect is found in the far field outside of the primary beam.
- Published
- 2009
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