97 results on '"Handley S"'
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2. Inhaled nitric oxide use in preterm infants in California neonatal intensive care units
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Handley, S C, Steinhorn, R H, Hopper, A O, Govindaswami, B, Bhatt, D R, Van Meurs, K P, Ariagno, R L, Gould, J B, and Lee, H C
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- 2016
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3. Outcomes of extremely preterm infants after delivery room cardiopulmonary resuscitation in a population-based cohort
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Handley, S C, Sun, Y, Wyckoff, M H, and Lee, H C
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- 2015
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4. Expansion of shellfish aquaculture has no impact on settlement rates
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Toone, TA, primary, Benjamin, ED, additional, Handley, S, additional, Jeffs, A, additional, and Hillman, JR, additional
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- 2022
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5. Visual outcomes and predictors in optic pathway glioma: a single centre study
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Bowman, R., primary, Walters, B., additional, Smith, V., additional, Prise, K. L., additional, Handley, S. E., additional, Green, K., additional, Mankad, K., additional, O’Hare, P., additional, Dahl, C., additional, Jorgensen, M., additional, Opocher, E., additional, Hargrave, D., additional, and Thompson, D. A., additional
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- 2022
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6. Clozapine-induced gastrointestinal hypomotility: presenting features and outcomes, UK pharmacovigilance reports, 1992–2017
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Handley, S. A., primary, Every-Palmer, S., additional, Ismail, A., additional, and Flanagan, R. J., additional
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- 2022
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7. Reporting guidelines for human microbiome research: the STORMS checklist
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Mirzayi, C, Renson, A, Furlanello, C, Sansone, SA, Zohra, F, Elsafoury, S, Geistlinger, L, Kasselman, LJ, Eckenrode, K, van de Wijgert, J, Loughman, Amy, Marques, FZ, MacIntyre, DA, Arumugam, M, Azhar, R, Beghini, F, Bergstrom, K, Bhatt, A, Bisanz, JE, Braun, J, Bravo, HC, Buck, GA, Bushman, F, Casero, D, Clarke, G, Collado, MC, Cotter, PD, Cryan, JF, Demmer, RT, Devkota, S, Elinav, E, Escobar, JS, Fettweis, J, Finn, RD, Fodor, AA, Forslund, S, Franke, A, Gilbert, J, Grice, E, Haibe-Kains, B, Handley, S, Herd, P, Holmes, S, Jacobs, JP, Karstens, L, Knight, R, Knights, D, Koren, O, Kwon, DS, Langille, M, Lindsay, B, McGovern, D, McHardy, AC, McWeeney, S, Mueller, NT, Nezi, L, Olm, M, Palm, N, Pasolli, E, Raes, J, Redinbo, MR, Rühlemann, M, Balfour Sartor, R, Schloss, PD, Schriml, L, Segal, E, Shardell, M, Sharpton, T, Smirnova, E, Sokol, H, Sonnenburg, JL, Srinivasan, S, Thingholm, LB, Turnbaugh, PJ, Upadhyay, V, Walls, RL, Wilmes, P, Yamada, T, Zeller, G, Zhang, M, Zhao, N, Zhao, L, Bao, W, Culhane, A, Devanarayan, V, Dopazo, J, Fan, X, Fischer, M, Jones, W, Kusko, R, Mason, CE, Mercer, TR, Scherer, A, Shi, L, Thakkar, S, Tong, W, Wolfinger, R, Hunter, C, Mirzayi, C, Renson, A, Furlanello, C, Sansone, SA, Zohra, F, Elsafoury, S, Geistlinger, L, Kasselman, LJ, Eckenrode, K, van de Wijgert, J, Loughman, Amy, Marques, FZ, MacIntyre, DA, Arumugam, M, Azhar, R, Beghini, F, Bergstrom, K, Bhatt, A, Bisanz, JE, Braun, J, Bravo, HC, Buck, GA, Bushman, F, Casero, D, Clarke, G, Collado, MC, Cotter, PD, Cryan, JF, Demmer, RT, Devkota, S, Elinav, E, Escobar, JS, Fettweis, J, Finn, RD, Fodor, AA, Forslund, S, Franke, A, Gilbert, J, Grice, E, Haibe-Kains, B, Handley, S, Herd, P, Holmes, S, Jacobs, JP, Karstens, L, Knight, R, Knights, D, Koren, O, Kwon, DS, Langille, M, Lindsay, B, McGovern, D, McHardy, AC, McWeeney, S, Mueller, NT, Nezi, L, Olm, M, Palm, N, Pasolli, E, Raes, J, Redinbo, MR, Rühlemann, M, Balfour Sartor, R, Schloss, PD, Schriml, L, Segal, E, Shardell, M, Sharpton, T, Smirnova, E, Sokol, H, Sonnenburg, JL, Srinivasan, S, Thingholm, LB, Turnbaugh, PJ, Upadhyay, V, Walls, RL, Wilmes, P, Yamada, T, Zeller, G, Zhang, M, Zhao, N, Zhao, L, Bao, W, Culhane, A, Devanarayan, V, Dopazo, J, Fan, X, Fischer, M, Jones, W, Kusko, R, Mason, CE, Mercer, TR, Scherer, A, Shi, L, Thakkar, S, Tong, W, Wolfinger, R, and Hunter, C
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- 2021
8. Transcriptional analysis of cervical cell populations reveals inflammatory signatures and differential epithelial keratinization associated with Depo-Provera use
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Byrne, E.H., Farcasanu, M., Bloom, S., Xulu, N., Xu, J., Handley, S., Bramante, J., Mitchell, C., Villani, A.-C., and Kwon, D.S.
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Prevention ,Medical examination ,Genetic aspects ,Health aspects ,HIV infections -- Prevention -- Genetic aspects ,Cytokines -- Health aspects ,Transcription (Genetics) -- Health aspects ,Cervix uteri -- Genetic aspects -- Medical examination ,Immune response -- Genetic aspects ,Genetic transcription -- Health aspects ,HIV infection -- Prevention -- Genetic aspects - Abstract
OA19.03 E.H. Byrne (1); M. Farcasanu (2); S. Bloom (3); N. Xulu (4); J. Xu (2); S. Handley (5); J. Bramante (2); C. Mitchell (6); A.-C. Villani (7) and D.S. [...], Background: Injectable progestin-only contraceptives (IPCs), including Depo-Provera (DMPA), have been associated with HIV acquisition risk in some epidemiological studies and in animal models. This risk has not been consistently observed and the risk of IPCs must be weighed against the known benefits of effective contraception. Regardless, understanding how IPCs shape the mucosal environment of the female genital tract can help elucidate biological mechanisms underlying their potential impact on HIV acquisition risk and may lead to new HIV prevention strategies. Methods: Cervical cytobrushes were collected from HIV-uninfected women aged 18 to 23 years through the FRESH (Females Rising through Education, Support, and Health) study in Umlazi, South Africa, and cervical epithelial and CD4+ T cells were FACS-sorted. RNAseq was performed on the sorted cells and data was analyzed using STAR, HTSeq, DESeq2, and GSEA. Results: Cervical epithelial cells were compared between women who reported using DMPA (n = 6) and women in the follicular phase of the menstrual cycle by reported last menstrual period (n = 6). tSNE clustering showed clear segregation between groups, and 369 genes were significantly differentially expressed. Of these genes, two of the most highly expressed in DMPA users were CCL3 and CCL3L3, mediators of T cell homing. GSEA analysis demonstrated that the epithelial gene sets most significantly over-expressed in DMPA-using women were keratinization, cellular response to IFNg, and keratinocyte differentiation (FDR q < 0.05). Parallel analysis of cervical CD4+ T cells identified 5 significantly differentially expressed genes (fold change >90) and a significantly enriched gene set in DMPA users, "positive regulation of T cell mediated immunity" (FDR q-val 0.087). Conclusions: In DMPA users, cervical epithelial cells express higher levels of the T cell homing cytokines CCL3 and CCL3L3, while cervical CD4+ T cells exhibit inflammatory gene set enrichment. At the same time, keratinization pathways may be altered in DMPA users, as suggested in previous literature. Together, these results suggest possible mechanisms by which progestins may contribute to genital inflammation and/or differential barrier function in the genital mucosa. These findings may point towards potential biological approaches to reduce HIV acquisition risk in women.
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- 2021
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9. Study of some of the pharmacological actions of noradrenaline and related compounds injected into the brains of mice
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Handley, S. L.
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615.3 - Published
- 1970
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10. Plasma and Urine Levamisole in Clinical Samples Containing Benzoylecgonine: Absence of Aminorex
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Handley, S A, primary, Belsey, S L, additional, Couchman, L, additional, and Flanagan, R J, additional
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- 2018
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11. Mood Changes In Puerperium, And Plasma Tryptophan And Cortisol Concentrations
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Handley, S. L., Dunn, T. L., Baker, J. M., Cockshott, C., and Gould, S.
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- 1977
12. Languages in Context in the UK: broadening the range and changing the brief
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Handley, S
- Abstract
The sharp decline in language take-up in schools and universities in the UK over the last two decades has become a matter for concern for a variety of reasons and from a range of perspectives. There have been a number of initiatives and interventions to foster language learning in schools, including the creation of a nation-wide portfolio of outreach activities by Routes into Languages.12 Although the work of Routes into Languages has demonstrated that activities and events can have a positive impact on student attitudes towards languages,13 the UK is still witnessing an unprecedented decline in languages uptake in schools, particularly at ‘A’ level. The purpose of this paper is to explore some of the reasons for this decline and evaluate how the introduction of a wider range of languages, including some community languages, could form part of the solution.
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- 2016
13. Plasma and Urine Levamisole in Clinical Samples Containing Benzoylecgonine: Absence of Aminorex.
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Handley, S A, Belsey, S L, Couchman, L, and Flanagan, R J
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- *
LEVAMISOLE , *BENZOYLECGONINE , *LIQUID chromatography-mass spectrometry , *DRUG residues in the body , *METABOLITES - Abstract
Aminorex has been reported as a metabolite of levamisole in man, but data on the aminorex concentrations in clinical samples are scant. We thus measured levamisole, aminorex and benzoylecgonine in urine, and levamisole and aminorex in plasma using achiral liquid chromatography-high resolution mass spectrometry. Centrifuged urine (50 μL) was diluted with LC eluent containing internal standard (benzoylecgonine-D3, 25 μg/L) (450 μL). For plasma, sample (200 μL) and Tris solution (2 mol/L, pH 10.6, 100 μL) were added to a 60.5 × 7.5 mm i.d. glass test tube. Internal standard solution (ketamine-D4, 200 μg/L) (10 μL) was added and the tube contents vortex-mixed (5 s). Butyl acetate:butanol (9 + 1, v/v ; 200 μL) was added and after vortex-mixing (30 s) and centrifugation (13,680 × g, 4 min), the extract was evaporated to dryness and reconstituted in 10 mmol/L aqueous ammonium formate containing 0.1% (v/v) formic acid (150 μL). Prepared samples and extracts (100 μL) were analyzed using an AccucoreTM Phenyl-Hexyl column (2.6 mm a.p.s. 100 × 2.1 mm i.d.) maintained at 40°C. MS detection was in positive mode using heated electrospray ionization (ThermoFisher Q-ExactiveTM). Intra- and inter-assay accuracy and precision were ±20%, and ≤11%, respectively, for all analytes in both matrices. Lower limits of quantitation were 0.1 and 1 μg/L (all analytes) in plasma and urine, respectively. Of 100 consecutive urine samples submitted for drugs of abuse screening containing benzoylecgonine, levamisole was detected in 72 (median 565, range 4–72,970 μg/L). Levamisole was also measured in eight plasma samples (median 10.6, range 0.9–64.1 μg/L). A number of metabolites of levamisole (4-hydroxylevamisole, levamisole sulfoxide, levamisole glucuronide, and hydroxylevamisole glucuronide) were tentatively identified in urine. Neither aminorex, nor any of its reported metabolites were detected in any sample. [ABSTRACT FROM AUTHOR]
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- 2019
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14. Trididemnum shawi Page & Willis & Handley 2014, sp. nov
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Page, M. J., Willis, T. J., and Handley, S. J.
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Trididemnum ,Trididemnum shawi ,Didemnidae ,Aplousobranchia ,Animalia ,Biodiversity ,Chordata ,Taxonomy ,Ascidiacea - Abstract
Trididemnum shawi sp. nov. (Figures 12, 11D) Type material Holotype: NIWA 10872. Type locality: Fiordland, Crayfish Heights, Thompson Sound (45° 14.279’S, 166° 59.566’E, 10 m, 31 February 2006). Paratypes: Fiordland, Crayfish Heights, Thompson Sound (45° 14.279’S, 166° 59.566’E, 10 m, 31 February 2006, NIWA 87166); The Narrows, Long Sound (46° 03.829’S, 166° 44.16’E, 13 m, 28 February 2009 NIWA 49945, one colony); Nine Fathom Passage, Dusky Sound (45° 44.237’S, 166° 53.199’E, 16 m, 1 February 2009, NIWA 49960, one colony); Sunday Cove, Breaksea Sound (45° 35.89S, 166° 44.58’E, 10 m, 18 April 2012, NIWA 68138, 68139, 68140, 68141 and 68142). Etymology Named after Lance Shaw in recognition of his lifetime passion for conservation in Fiordland. Description The colonies of Trididemnum shawi sp. nov. are irregular shaped cushions reaching 150 mm long and 50 mm high. They have large terminal common cloacal apertures (5 mm diameter) located at the proximal end of upright lobes in the colony. The colony is supported by positive hydrostatic pressure and basal test core expanded into the centre of large common cloacal cavities that collapse on removal from water. Colonies are peach coloured (YR 7/8) with characteristic clusters of red pigment cells scattered randomly throughout the test (Figure 11D). The texture is gelatinous with zooids regularly packed around the outside edge and sparse spicules concentrated in a layer around zooid branchial apertures. The inner test below the zooid thoraces has no spicules. Developing larvae are present in the test surrounding posterior abdominal cavities in colonies from Breaksea Sound. The zooids are small, the thoraces measuring 0.45 mm and abdomen 0.8 mm long in contracted specimens. There are reticulated posterior abdominal canals running below a single layer of zooids. The canals connect to a central common cloacal cavity in the anterior half of the colony, the centre supported by an extension of the basal test. The zooid branchial aperture has six sharply pointed lobes, and the atrial aperture is a sessile opening in the centre of the thorax. The branchial sac has three rows of stigmata and a small lateral thoracic organ each side adjacent to the third row of stigmata (Figure 12A). The number and shape of stigmata are difficult to determine due to contraction of the thorax. There is a long retractor muscle originating from the base of the thorax. The gut has a smooth globular stomach and the intestine is wide with constrictions occurring between duodenum, posterior stomach and rectum (Figure 12A). There is a single large dome-shaped testis follicle with a vas deferens tightly coiled 10–11 times anticlockwise (Figure 12B); a large ovum lies on the anterior dorsal side of the testis. Developed larvae in colonies collected in April 2012 from Breaksea Sound (NIWA68138) are large (trunk length 1.1 mm) and have four stout lateral ampullae crowded each side of three slender adhesive papillae (Figure 12C). Zooids in these colonies have no testis, suggesting that the reproductive season has ended, but the brooded larvae are still maturing. Stellate spicules are present in a layer around the zooid thoraces and range in size from Remarks Of nine species of Trididemnum described with sessile atrial openings similar to Trididemnum shawi sp. nov., Trididemnum cyclops Michaelsen, 1921 and T. miniatum Kott, 1977 have only six, and T. nubilum Kott, 1980 seven coils of the vas deferens, compared with 10–11 for T. shawi sp. nov.. Trididemnum paracyclops Kott, 1980 from Australia and the Western Pacific has 10 coils of the vas deferens, but differs markedly in colony (forming thin encrusting colonies), zooid and spicule morphology, a zooid with a long oesophageal neck and larvae with only two adhesive papillae. Trididemnum poma Monniot and Monniot, 2001 from Saipan has a larva with a similar arrangement of adhesive papillae and lateral ampullae, but the larvae are significantly smaller (0.25 mm compared with 1.1 mm) than those of T. shawi sp. nov.. Furthermore, the colonies of T. poma are thin, brittle and encrusting compared with those of T. shawi. Both Trididemnum species recorded from New Zealand, T. sluiteri Brewin, 1958 and T. cerebriforme Hartmeyer, 1913, differ from T. shawi in possessing atrial siphons. Trididemnum shawi sp. nov. is distinguished from the majority of species in this genus by the presence of a sessile transverse atrial opening, a large number of coils of the vas deferens, cushion-shaped colonies with terminal common cloacal apertures and scattered red pigment granules in the tunic., Published as part of Page, M. J., Willis, T. J. & Handley, S. J., 2014, The colonial ascidian fauna of Fiordland, New Zealand, with a description of two new species, pp. 1653-1688 in Journal of Natural History (J. Nat. Hist.) (J. Nat. Hist.) 48 (27 - 28) on pages 1676-1678, DOI: 10.1080/00222933.2014.896487, http://zenodo.org/record/5193878, {"references":["Michaelsen, W. 1921. Ascidien vom westlichen Indeschen Ozean aus dem Reichmuseum zu Stockholm. Arkiv foer Zoologi. 13: 1 - 25.","Kott, P. 1977 Algal-supporting didemnid ascidians for the Great Barrier Reef. In: Proceedings of the Second International Coral Reef Symposium; Maiami: University of Maiami.","Kott, P. 1980. Algal-bearing didemnid ascidians in the Indo-west Pacific. Memoirs of the Queensland Museum. 20: 1 - 47.","Hartmeyer, R. 1913. Tunicata. In: L Schaltze (ed), Zoologische und Antropologische Ergebnisse einer For schungsreise im Westlichen und Zentrelen Sudafrica ausgefuhrt in den Jaren 1903 - 1905. Bd. 5. Denkschriften der Medizinisch-naturwissenschaftlichen Gesellschaft zu Jena 17: p. 124 - 144."]}
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- 2014
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15. Ritterella sigillinoides
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Page, M. J., Willis, T. J., and Handley, S. J.
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Ritterella sigillinoides ,Ritterellidae ,Ritterella ,Aplousobranchia ,Animalia ,Biodiversity ,Chordata ,Taxonomy ,Ascidiacea - Abstract
Ritterella sigillinoides (Brewin, 1958) Pesudodistoma sigillinoides Brewin, 1958a: p. 455, fig. 2A 1, A 2, A 3, A 4 Pesudodistoma sigillinoides: Millar 1982: p. 47 Material examined New Records: Edwardson Sound (45° 56.52’S, 166° 37.56’E, 14 m, 29 February 2009, NIWA 49948, three colonies); Caswell Sound (45° 01.01’S, 167° 08.40’E, 18 m, 3 February 2009, NIWA 49989, two colonies). Previously recorded: New Zealand, Stewart Island (Brewin 1958a); east coast Stewart Island, 101 m (Millar 1982). Description The colonies have numerous, small light-yellow capitate heads to 10 mm diameter on slender tapering, almost woody, sometimes branching stalks up to 40 mm high. As many as 20–30 zooids are embedded in a soft gelatinous test and open separately to the surface. The zooids are up to 14 mm long with atrial and branchial siphons that have six low indistinct lobes and a stomach with 11 broken folds. No larvae were present in specimens collected from Fiordland. Remarks This species is relatively uncommon in Fiordland and easily distinguished from other species by soft gelatinous colony heads. The branching character in the specimens collected in Fiordland agrees with the description by Millar (1982) collected from 135 m off Port Pegasus, Stewart Island. Deep emergent species are common in shallow water in Fiordland. The branching character seen in colonies here may be common to individuals in deeper environments., Published as part of Page, M. J., Willis, T. J. & Handley, S. J., 2014, The colonial ascidian fauna of Fiordland, New Zealand, with a description of two new species, pp. 1653-1688 in Journal of Natural History (J. Nat. Hist.) (J. Nat. Hist.) 48 (27 - 28) on page 1676, DOI: 10.1080/00222933.2014.896487, http://zenodo.org/record/5193878, {"references":["Brewin, BI. 1958 a. Ascidians of New Zealand. Part XI. Ascidians of the Stewart Island region. Trans Royal Soc NZ. 85: 439 - 453.","Millar, RH. 1982. The marine fauna of New Zealand: Ascidiacea. New Zealand Oceanogr Mem. 85: 114 pp."]}
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- 2014
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16. Aplidium benhami
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Page, M. J., Willis, T. J., and Handley, S. J.
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Aplidium benhami ,Aplousobranchia ,Polyclinidae ,Animalia ,Biodiversity ,Aplidium ,Chordata ,Taxonomy ,Ascidiacea - Abstract
Aplidium benhami (Brewin, 1946) (Figures 9, 7C) Aplidium (Amaroucium) benhami Brewin, 1946: p. 95 –97, fig. 4, pl. 2, figs 1, 4, pl. 3, fig. 3, pl. 5, fig. 1. Amaroucium benhami Brewin, 1956a: p. 122; 1958a: p. 439; 1960: p119. Material examined New records: Thompson Sound, Crayfish heights (45° 13.182’S, 166° 58.656’E, 3–10 m, 30 January.2006, NIWA 49993). Previously recorded: New Zealand, South Island; Portobello Peninsula (Brewin 1946), Chatham Islands (Brewin 1956a), Stewart Island (Brewin 1958a) and Cook Strait (Brewin 1960). Description Aplidium benhami has characteristic small orange vase-shaped colonies arising from a short narrow stalk. The colony heads, approximately 30 mm high, can be joined at their base to form diffuse aggregations in a larger colony (Figure 7C). The hemispherical tops of the colony heads contain up to 60 zooids in a soft, sand-free gelatinous test. The orange zooids form stellate systems around indistinct common cloacal apertures. The rim of zooid branchial apertures is pigmented white and the atrial aperture surmounted by three lappets, the central one being the longest of the three. Zooids measure approximately 9 mm long, and the post-abdomen encompasses half of the total length (Figure 9A). The branchial sac has 11 rows of 12–13 stigmata per half row. The stomach is barrel-shaped with 23–29 discontinuous folds. Testis follicles occur in paired rows in the posterior threequarters of the post-abdomen and the ovary lies above at the anterior end. Bright orange embryos are crowded in the atrial cavity, which is bulged into a brood pouch to accommodate the large larvae, 0.85 mm in trunk length (Figure 9B). The larvae have three slender median ampullae alternating between three adhesive papillae arranged along the median line and four short lateral ampullae each side (Figure 9C). Remarks Fiordland species closely resemble the type specimen from Otago (Brewin 1946) in colour, colony and zooid morphology. However, Brewin did not note the presence of a brood pouch, or show detail of the arrangement of ampullae on lateral and median sides of the tadpole. The 3.4 mm long tadpole measured by Brewin is significantly greater than the trunk length of larvae from our material (0.85 mm). Brewin’ s measurement probably referred to the total larval length. Aplidium larvae are generally less than 1.0 mm trunk length with few exceptions; e.g. Kott (1992) named Aplidium magnilarvum Kott, 1992 after the large 2 mm long larva (trunk length)., Published as part of Page, M. J., Willis, T. J. & Handley, S. J., 2014, The colonial ascidian fauna of Fiordland, New Zealand, with a description of two new species, pp. 1653-1688 in Journal of Natural History (J. Nat. Hist.) (J. Nat. Hist.) 48 (27 - 28) on pages 1668-1669, DOI: 10.1080/00222933.2014.896487, http://zenodo.org/record/5193878, {"references":["Brewin, BI. 1946. Ascidians in the vicinity of the Portobello Marine Biological Station, Otago Harbour. Trans Proc Royal Soc New Zealand. 76: 87 - 131.","Brewin, BI. 1956 a. Ascidians from the Chatham Islands and the Chatham Rise. Trans Proc Royal Soc New Zealand. 84: 121 - 137.","Brewin, BI. 1958 a. Ascidians of New Zealand. Part XI. Ascidians of the Stewart Island region. Trans Royal Soc NZ. 85: 439 - 453.","Brewin, BI. 1960. Ascidians of New Zealand. Part XIII. Ascidians of the Cook Strait region. Trans Proc Royal Soc New Zealand. 88: 119 - 120.","Kott, P. 1992. The Australian ascidiacea III. Aplousobranchia (2). Memoirs of the Queensland Museum. 32: 375 - 620."]}
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- 2014
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17. Botryllus stewartensis Brewin 1958
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Page, M. J., Willis, T. J., and Handley, S. J.
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Botryllus ,Animalia ,Biodiversity ,Chordata ,Botryllus stewartensis ,Stolidobranchia ,Taxonomy ,Ascidiacea ,Styelidae - Abstract
Botryllus stewartensis Brewin, 1958 (Figures 2, 3A) Botryllus stewartensis Brewin, 1958a: p. 447, fig. 3 A 1 –A 5. Parabotryllus nemorus Kott, 1975: p. 11. Botryllus stewartensis: Millar, 1982: p. 61. Botryllus stewartensis: Kott, 1985: p. 269; Kott, 1990: p. 286; Kott, 2006: p. 221, fig. 10H. Material examined New records: Breaksea Sound, First Cove (45° 34.74’S, 166° 44.43’E, 15 m, 1 February 2009, NIWA 49968, NIWA 49974); Caswell Sound, Paua Bay (45° 01.01’S, 166° 08.40’E, 25 m, NIWA 49983). Previously recorded: New Zealand, Stewart Island and Foveaux Strait (Brewin 1958a); Stewart Island, 47° 15’S, 167° 55’E, 101 m (Millar 1982): p. 61, fig. 32; Queensland, Western and South Australia (see Kott 1990). Description The colonies are approximately 120 mm in diameter, comprising a transparent gelatinous test that can vary widely in colour from mauve (RP 5/4, NIWA 49968) to light tan (YR 7/4, NIWA 49974). The colonies have a basal mat with tightly packed flat-topped lobes approximately 10 mm high and 10 mm in diameter (Figure 3A). Sand adheres to the sides of the lobes, but the heads and test internally have no incorporated sand (Figure 2A). Up to 10 zooids are arranged in circular systems around a common cloacal aperture. Several systems may occur on a single head. The zooids have a narrow branchial aperture with 12 long oral tentacles. There are three longitudinal vessels on each side of the branchial sac with 10–12 rows of 13 stigmata per half row. The atrial aperture is produced into a short siphon (Figure 2B). There is a single fan-shaped testis follicle with numerous, sometimes divided lobes on each side of the branchial sac (Figure 2C). Up to four embryos can be found developing anterior to the testis follicles on each side of the branchial sac. The stomach is oblong with nine continuous folds excluding the typhlosole, which extends into the pyloric region of the stomach (Figure 2D). A pyloric caecum approximately half the length of the stomach arises from the pyloric end of the typhlosole, curving in towards the pole of the gut loop. There is a distinctive ‘bulb-like’ protuberance at the distal end of the caecum that varies in size among zooids. A pyloric gland is evident on the distal part of the intestine adjacent to the bulbous end of the caecum. Remarks The specimens examined from Fiordland closely resemble colony morphology of the Stewart Island holotype described by Brewin (1958a). The characters that distinguish New Zealand and Australian Botryllus stewartensis (Kott 1985) are the arrangement of zooids in circular systems at the terminal end of sandy flattopped lobes, an atrial siphon with a short languet, fan-shaped testis follicles and an inwardly curved lobed caecum on the left side of the stomach. Detailed examination of the stomach morphology shows nine folds excluding the typhlosole, which may have been included as the 10 th fold in descriptions by Brewin (1958a) and Kott (1985). Neither of these authors noted the presence of a pyloric gland, distinctive in specimens described in this study., Published as part of Page, M. J., Willis, T. J. & Handley, S. J., 2014, The colonial ascidian fauna of Fiordland, New Zealand, with a description of two new species, pp. 1653-1688 in Journal of Natural History (J. Nat. Hist.) (J. Nat. Hist.) 48 (27 - 28) on pages 1654-1658, DOI: 10.1080/00222933.2014.896487, http://zenodo.org/record/5193878, {"references":["Brewin, BI. 1958 a. Ascidians of New Zealand. Part XI. Ascidians of the Stewart Island region. Trans Royal Soc NZ. 85: 439 - 453.","Kott, P. 1975. The ascidians of South Australia III. Northern sector of the Great Australian Bight and additional records. Trans Royal Soc South Australia. 99: 1 - 20.","Millar, RH. 1982. The marine fauna of New Zealand: Ascidiacea. New Zealand Oceanogr Mem. 85: 114 pp.","Kott, P. 1985. The Australian Ascidiacea I. Phlebobranchia and Stolidobranchia. Memoirs of the Queensland Museum. 23: 440.","Kott, P. 1990. The Australian Ascidiacea, Phlebobrancia and Stolidobranchia, supplement. Memoirs of the Queensland Museum. 29: 267 - 298.","Kott, P. 2006. Observations on non- didemnid ascidians from Australian waters (1). J Nat Hist. 40: 169 - 234."]}
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- 2014
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18. Didemnum lithostrotum Brewin 1956
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Page, M. J., Willis, T. J., and Handley, S. J.
- Subjects
Didemnum lithostrotum ,Didemnidae ,Aplousobranchia ,Animalia ,Biodiversity ,Chordata ,Didemnum ,Taxonomy ,Ascidiacea - Abstract
Didemnum lithostrotum Brewin, 1956 (Figure 11F) Didemnum lithostrotum Brewin, 1956a: p. 127 –129, figs 3A 1, A 2, A 3. Didemnum lithostrotum: Millar 1982: 49, 51. Material examined New record: Caswell Sound, Paua Bay (45° 01.01’S, 167° 08.40’E, 20 m, 3 February 2009, NIWA 49980, one colony). Previously recorded: New Zealand: Chatham Islands (Brewin 1956a); Chatham Rise (Brewin 1956a); Stewart Island (Brewin 1958a). Description The pink/orange (YR 7/6) colony from Caswell Sound is 1 mm thick, encrusting on the brachiopod Liothyrella neozealandica. The test is divided into irregular polygonal areas, each with a central common cloacal aperture (Figure 11F). Spicules occur throughout the colony, although more are concentrated in a layer near the surface and at the substratum. They have eight rounded rays in optical cross-section and measure 40–70 µm in diameter. The zooids are 1 mm long in fixed material, the branchial aperture is relatively tall with six low pointed lobes, and the atrial aperture is smooth rimmed with a short simple lappet. The stomach is small and globular. There are two testis follicles with six to seven coils of the vas deferens. Remarks Possible synonymy of this species to Didemnum densum (Nott 1892) was mentioned by Millar (1982). We have placed the Fiordland colony in the species Didemnum lithostrotum based on the southern distribution of the holotype, and different morphology of the tunic (not in polygonal pattern in D. densum) and the branchial aperture lobes. The zooids in the current species are smaller than given by Brewin (1956a), but this is because they were contracted on collection and preservation. Didemnum densum in relaxed colonies has a branchial siphon with needle-like lobes whereas D. lithostrotum does not. An in-situ photograph by Stocker (1985) identified as D. densum shows polygonal pattern in the tunic; it could be a misidentification because this is an important character., Published as part of Page, M. J., Willis, T. J. & Handley, S. J., 2014, The colonial ascidian fauna of Fiordland, New Zealand, with a description of two new species, pp. 1653-1688 in Journal of Natural History (J. Nat. Hist.) (J. Nat. Hist.) 48 (27 - 28) on page 1680, DOI: 10.1080/00222933.2014.896487, http://zenodo.org/record/5193878, {"references":["Brewin, BI. 1956 a. Ascidians from the Chatham Islands and the Chatham Rise. Trans Proc Royal Soc New Zealand. 84: 121 - 137.","Millar, RH. 1982. The marine fauna of New Zealand: Ascidiacea. New Zealand Oceanogr Mem. 85: 114 pp.","Brewin, BI. 1958 a. Ascidians of New Zealand. Part XI. Ascidians of the Stewart Island region. Trans Royal Soc NZ. 85: 439 - 453.","Nott, JT. 1892. On the composite ascidians of the North Shore reef. Trans Proc New Zealand Inst. 24: 305 - 334.","Stocker, LJ. 1985. An identification guide to some common New Zealand ascidians. University of Auckland Leigh Marine Laboratory, Auckland, New Zealand. 74 p."]}
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- 2014
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19. Curating Magic at the John Rylands Library: The 2016 Exhibition 'Magic, Witches and Devils in the Early Modern World'
- Author
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Spinks, J, Handley, S, Gordon, S, Spinks, J, Handley, S, and Gordon, S
- Published
- 2016
20. Magic, Witches and Devils in the Early Modern World
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SPINKS, J, Handley, S, Gordon, S, Spinks, J, SPINKS, J, Handley, S, Gordon, S, and Spinks, J
- Published
- 2016
21. Catalogue entries: ‘Introduction: A brief history of the supernatural in Europe, 1400-1800’; ‘The Stereotypical Witch?’; ‘Magic, Nature and the Body’; ‘Supernatural Spaces and Vulnerability’; ‘Diabolical Fears and Battles’; ‘Mechanical Magic and Sceptical Approaches’; ‘Supernatural Encounters’
- Author
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SPINKS, J, Handley, S, Gordon, S, SPINKS, J, Handley, S, and Gordon, S
- Published
- 2016
22. Languages in Context in the UK: broadening the range and changing the brief
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Hann, Naeema, Handley, S, Hann, Naeema, and Handley, S
- Published
- 2016
23. Outcomes of extremely preterm infants after delivery room cardiopulmonary resuscitation in a population-based cohort
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Handley, S C, primary, Sun, Y, additional, Wyckoff, M H, additional, and Lee, H C, additional
- Published
- 2014
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24. Trans Tasman paediatric CT dose audit.
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Phillips M., Goergen S., Bettenay F., Rajan A., Handley S., Jackson D., Ditchfield M., Grimm J., Clark J., Wilson F., Onikul E., Pereira J., Linke R., Long G., Phillips M., Goergen S., Bettenay F., Rajan A., Handley S., Jackson D., Ditchfield M., Grimm J., Clark J., Wilson F., Onikul E., Pereira J., Linke R., and Long G.
- Abstract
Purpose: To assess radiation doses delivered during paediatric CT scanning in Australia and New Zealand. Methods and Materials: Eight paediatric specialist hospitals and one private practice with paediatric radiologist staff contributed data. Individual scan data including dose metrics (CTDIvol, DLP) and patient girth for the following protocols were audited: brain (trauma), brain (shunt study), petrous temporal bone for hearing loss, paranasal sinuses, chest (mass), HRCT chest (airways disease), abdomen portal venous phase (tumour evaluation). Scanning platforms audited were: GE Discovery 750HD and VCT XT; Philips Brilliance 64 and Ingenuity 128; Siemens Somatom Definition Flash 128, Somatom Emotion 16 and Sensation 64; Toshiba Aquilion 1, Aquilion 64 and Prime. Size specific dose estimates (SSDE) were calculated for each examination. Patient age in completed months was recorded and data aggregated into four age cohorts for comparative purposes: 0-1 year, 1-5, 5-10 and 10-16. Result(s): Data from 1106 examinations was collected. A 5-10-fold variation in dose (DLP) from the lowest to highest dose was identified with the largest variation being for chest CT. A 7-25-fold variation in SSDE (which takes into account patient girth and phantom used by the scanner to generate CTDIvol) was observed. Conclusion(s): Although large variations in dose and SSDE were recorded, median doses for brain, chest and abdominal scans were below limits recommended following a Swiss national audit of paediatric CT practice,1 with the exception of brain CT for trauma in the youngest age groups in whom median DLPs were 319 (0-1) and 459 (1-5), respectively. This represents the first published study of paediatric CT dose incorporating the calculation of SSDEs.
- Published
- 2012
25. A case of arrested primary congenital glaucoma
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Shaw, M, primary, Handley, S, additional, Porooshani, H, additional, and Papadopoulos, M, additional
- Published
- 2012
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26. Bartonella grahamii infecting rodents display high genetic diversity overshort geographic distances.
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Ehrenborg, C, Handley, S, Ellis, B, Mills, J, Holmberg, M, Ehrenborg, C, Handley, S, Ellis, B, Mills, J, and Holmberg, M
- Published
- 2003
27. Annual pattern of brooding and settlement in a population of the flat oysterOstrea chilensisfrom central New Zealand
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Brown, S, primary, Handley, S, additional, Michael, K, additional, and Schiel, D, additional
- Published
- 2010
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28. Effects of bleeder cloth impressions on the use of polar backscatter to detect porosity
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Handley, S. M, Miller, J. G, and Madaras, Eric I
- Subjects
Quality Assurance And Reliability - Abstract
The influence of the nature of the composite's surface on ultrasonic polar backscatter measurements for detecting and characterizing porosity in composite laminates is studied, focusing on the effects of bleeder cloth impressions noted by Bar-Cohen (1987). The results indicate that the presence of the bleeder cloth impressions substantially influences the degree of anisotropy. It is found that, for relatively thin samples in which selective time gating is not feasible, the state of the insonified surface and the state of the back surface both influence the received signal.
- Published
- 1988
29. 8 Effect of Dexamethasone on Neuronal Nuclear Calcium Influx in the Developing Fetal Guinea Pig
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Anday, E K, primary, Handley, S J, additional, Ashraf, Q M, additional, and Mishra, O P, additional
- Published
- 2005
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30. Experimental determination of phase velocity of perfluorocarbons: applications to targeted contrast agents
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Hall, C, Lanza, G, Rose, J, Kaufmann, R, Fuhrhop, R, Handley, S, Waters, K, Miller, J, and Wickline, S
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Perfluorocarbons -- Research ,Ultrasonics -- Research ,Business ,Electronics ,Electronics and electrical industries - Published
- 2000
31. A programmable DSP solution to a solid state audio player
- Author
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Hayes, J., primary, Handley, S., additional, Kridner, J., additional, and Nadeski, M., additional
- Published
- 1999
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32. Spionid polychaetes in Pacific oysters,Crassostrea gigas(Thunberg) from Admiralty Bay, Marlborough Sounds, New Zealand
- Author
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Handley, S. J., primary
- Published
- 1995
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33. Annual pattern of brooding and settlement in a population of the flat oyster Ostrea chilensis from central New Zealand.
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Brown, S., Handley, S., Michael, K., and Schiel, D.
- Subjects
- *
OSTREA chilensis , *EGG incubation , *EFFECT of temperature on larvae , *LIMITING factors (Ecology) - Abstract
The article reports on a study conducted on the larval brooding and settlement patterns of a flat oyster, Ostrea chilensis, in Tasman Bay, New Zealand. It was found that the peak breeding season occurs from late spring to through summer while winters follow very low brooding activity. Also, settlement was maximum from November to January and low in winter. A comprehensive analysis of the study is presented.
- Published
- 2010
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34. Spionid polychaetes in Pacific oysters, Crassostrea gigas (Thunberg) from Admiralty Bay, Marlborough Sounds, New Zealand.
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Handley, S. J.
- Published
- 1995
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35. Temperature changes produced by the injection of catecholamines and 5‐hydroxytryptamine into the cerebral ventricles of the conscious mouse
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Brittain, R. T. and Handley, S. L.
- Abstract
1. Changes in temperature were determined following injection of noradrenaline, adrenaline, isoprenaline, dopamine and 5‐hydroxytryptamine (5‐HT) into the cerebral ventricles of the conscious mouse.
- Published
- 1967
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36. Effects of long-term treatment with contraceptive steroids on plasma and brain tryptophan, brain 5-hydroxytryptamine, and locomotor activity in female mice [proceedings]
- Author
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Baker, J M, Bond, S W, and Handley, S L
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Brain Chemistry ,Mice ,Serotonin ,Time Factors ,Contraceptive Agents, Female ,Tryptophan ,Animals ,Female ,Motor Activity ,Research Article - Abstract
The effects of prolonged daily injections of norethistrone acetate (200 mcg/kg) alone and in combination with ethinyl estradiol (100 mcg/kg) were compared with daily vehicle injection. Locomotor activity was determined continuously for 2 estrus cycles prior to injection, the every 7th day throughout 42 days of treatment. Free and total plasma tryptophan and brain tryptophan and 5-HT (serotonin) were determined on the 43rd day and compared with diestrous values. Locomotor activity declined after both treatments. The norethistrone group had 47% of activity. The combination group was 54% of initial diestrus values. Vehicle controls resumed cyclic changes in locomotor activity within 8 days, while the hormone treatments abolished these cyclic changes. Norethistrone was ineffective in changing brain tryptophan values. The combined treatment caused the reduction of plasma total and free tryptophan, probably due to acceleration of protein synthesis.
- Published
- 1977
37. The effects of agents acting at pre- and postsynaptic alpha-adrenoceptors on haloperidol catalepsy [proceedings]
- Author
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Brown, J. and Handley, S. L.
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Male ,Catalepsy ,Mice ,Synapses ,Animals ,Haloperidol ,Humans ,Drug Interactions ,Receptors, Adrenergic, alpha ,Research Article ,Receptors, Adrenergic - Published
- 1979
38. Differential Localization and Regulation of Central 5-HT(1A) and 5-HT(3) Receptors
- Author
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Bradley, P. B., Handley, S. L., Kidd, Emma Jane, Laporte, A. M., Langlois, X., Lombard, M. C., Gozlan, H., Hamon, M., Bradley, P. B., Handley, S. L., Kidd, Emma Jane, Laporte, A. M., Langlois, X., Lombard, M. C., Gozlan, H., and Hamon, M.
39. A case of arrested primary congenital glaucoma.
- Author
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Shaw, M, Handley, S, Porooshani, H, and Papadopoulos, M
- Subjects
- *
LETTERS to the editor , *CONGENITAL glaucoma , *GENETIC disorders in children , *DIAGNOSIS - Abstract
A letter to the editor is presented regarding the case study of a 14-month-old boy with a primary congenital glaucoma.
- Published
- 2013
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40. EFFECT OF DEXAMETHASONE ON NEURONAL NUCLEAR CALCIUM INFLUX IN THE DEVELOPING FETAL GUINEA PIG
- Author
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ANDAY, E K., HANDLEY, S J., ASHRAF, Q M., and MISHRA, O P.
- Published
- 2005
41. History of pine forestry in the Pelorus/Te Hoiere catchment and the Marlborough Sounds
- Author
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Urlich, Stephen and Handley, S. J.
42. The Consequences of Anthropomorphic and Teleological Beliefs in a Global Pandemic.
- Author
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Roberts AJ, Handley S, and Polito V
- Abstract
To describe something in terms of its purpose or function is to describe its teleology. Previous studies have found that teleological beliefs are positively related to anthropomorphism, and that anthropomorphism decreases the perceived unpredictability of non-human agents. In the current study, we explore these relationships using the highly salient example of beliefs about the coronavirus pandemic. Results showed that both anthropomorphism and teleology were negatively associated with perceived uncertainty and threat, and positively associated with self-reported behavioural change in response to the pandemic. These findings suggest that highly anthropomorphic and teleological individuals may view coronavirus as agentive and goal-directed. While anthropomorphic and teleological beliefs may facilitate behavioural change in response to the pandemic, we also found that the associated reduction in uncertainty and threat may be detrimental to behavioural change. We discuss the implications of these findings for messaging about global events more broadly.
- Published
- 2024
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43. Pancreatic Islet Viability Assessment Using Hyperspectral Imaging of Autofluorescence.
- Author
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Campbell JM, Walters SN, Habibalahi A, Mahbub SB, Anwer AG, Handley S, Grey ST, and Goldys EM
- Subjects
- Humans, Animals, Mice, Hyperspectral Imaging, Cytokines, Hypoxia, Islets of Langerhans diagnostic imaging, Insulin-Secreting Cells
- Abstract
Islets prepared for transplantation into type 1 diabetes patients are exposed to compromising intrinsic and extrinsic factors that contribute to early graft failure, necessitating repeated islet infusions for clinical insulin independence. A lack of reliable pre-transplant measures to determine islet viability severely limits the success of islet transplantation and will limit future beta cell replacement strategies. We applied hyperspectral fluorescent microscopy to determine whether we could non-invasively detect islet damage induced by oxidative stress, hypoxia, cytokine injury, and warm ischaemia, and so predict transplant outcomes in a mouse model. In assessing islet spectral signals for NAD(P)H, flavins, collagen-I, and cytochrome-C in intact islets, we distinguished islets compromised by oxidative stress (ROS) (AUC = 1.00), hypoxia (AUC = 0.69), cytokine exposure (AUC = 0.94), and warm ischaemia (AUC = 0.94) compared to islets harvested from pristine anaesthetised heart-beating mouse donors. Significantly, with unsupervised assessment we defined an autofluorescent score for ischaemic islets that accurately predicted the restoration of glucose control in diabetic recipients following transplantation. Similar results were obtained for islet single cell suspensions, suggesting translational utility in the context of emerging beta cell replacement strategies. These data show that the pre-transplant hyperspectral imaging of islet autofluorescence has promise for predicting islet viability and transplant success.
- Published
- 2023
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- View/download PDF
44. Verification of the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site Optilite benchtop analyser.
- Author
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Handley SA, Dote NP, Wanandy T, and Prentice L
- Abstract
Objectives: Inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS) are increasingly prevalent disorders. Faecal calprotectin is useful in the differential diagnosis of IBD from IBS and monitoring IBD activity. We verified the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site, Optilite benchtop analyser., Design: Accuracy, precision, lower limit of quantitation (LLoQ), and linearity of the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site, Optilite benchtop analyser were ascertained. Comparison with the Bühlmann Quantum Blue fCAL extended and DiaSorin, Liaison calprotectin assays were also undertaken. Difference between assays was evaluated using the Wilcoxon signed-rank test and method comparison was undertaken using Spearman's rank correlation (rs), difference plots and Passing-Bablok regression analyses., Results: The fCAL turbo assay was linear between 25 and 10,000 μg/g, and the LLoQ was 25 μg/g. Intra-, and inter-assay imprecision was <5%. There was a good agreement (rs = 0.96) and no significant bias (3%, p = 0.10) present between the fCAL turbo and Quantum Blue extended assays. Between the fCAL turbo and DiaSorin, liaison assays there was a good agreement (rs = 0.97), but a significant bias (53%, p = <0.01) was present., Conclusions: The fCAL turbo assay performs well on the Binding Site, Optilite benchtop analyser. Calprotectin results are commutable between with Bühlmann fCAL turbo and Quantum Blue fCAL extended assays, but not between Bühlmann and DiaSorin calprotectin assays., Competing Interests: All authors have no financial or personal conflicts of interests to declare., (© 2023 The Authors.)
- Published
- 2023
- Full Text
- View/download PDF
45. Reporting guidelines for human microbiome research: the STORMS checklist.
- Author
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Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, and Waldron L
- Subjects
- Humans, Translational Science, Biomedical, Computational Biology methods, Dysbiosis microbiology, Microbiota physiology, Observational Studies as Topic methods, Research Design
- Abstract
The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results., (© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2021
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- View/download PDF
46. A potently neutralizing anti-SARS-CoV-2 antibody inhibits variants of concern by binding a highly conserved epitope.
- Author
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VanBlargan L, Adams L, Liu Z, Chen RE, Gilchuk P, Raju S, Smith B, Zhao H, Case JB, Winkler ES, Whitener B, Droit L, Aziati I, Shi PY, Creanga A, Pegu A, Handley S, Wang D, Boon A, Crowe JE, Whelan SPJ, Fremont D, and Diamond M
- Abstract
With the emergence of SARS-CoV-2 variants with increased transmissibility and potential resistance, antibodies and vaccines with broadly inhibitory activity are needed. Here we developed a panel of neutralizing anti-SARS-CoV-2 mAbs that bind the receptor binding domain of the spike protein at distinct epitopes and block virus attachment to cells and its receptor, human angiotensin converting enzyme-2 (hACE2). While several potently neutralizing mAbs protected K18-hACE2 transgenic mice against infection caused by historical SARS-CoV-2 strains, others induced escape variants in vivo and lost activity against emerging strains. We identified one mAb, SARS2-38, that potently neutralizes all SARS-CoV-2 variants of concern tested and protects mice against challenge by multiple SARS-CoV-2 strains. Structural analysis showed that SARS2-38 engages a conserved epitope proximal to the receptor binding motif. Thus, treatment with or induction of inhibitory antibodies that bind conserved spike epitopes may limit the loss of potency of therapies or vaccines against emerging SARS-CoV-2 variants.
- Published
- 2021
- Full Text
- View/download PDF
47. Accounting for sleep loss in early modern England.
- Author
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Handley S
- Abstract
How did people in the sixteenth and seventeenth centuries account for sleep loss? This article answers this question through an in-depth analysis of the life-writings of six early modern women and men that suffered from periodic or persistent episodes of sleep loss. It focuses on the ways in which these health crises were understood to impede the ordinary functions of body and mind, while also revealing how gendered discourses of illness shaped female and male explanations of sleep loss in different ways. The article is the first to identify early modern sleep loss as an acknowledged cause of poor mental health. It also sheds important light on how the distinctive medical culture of the period ca 1500-1700 encouraged ordinary householders to protect the quality of their sleep by moderating their bedtimes, diets, emotions, and by preparing soporific remedies for the home. This evidence shows that restorative sleep was treasured as an unparalleled guardian and barometer of physical, mental and spiritual health., Competing Interests: I declare I have no competing interests., (© 2020 The Author(s).)
- Published
- 2020
- Full Text
- View/download PDF
48. Rapid Cloning of Novel Rhesus Adenoviral Vaccine Vectors.
- Author
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Abbink P, Kirilova M, Boyd M, Mercado N, Li Z, Nityanandam R, Nanayakkara O, Peterson R, Larocca RA, Aid M, Tartaglia L, Mutetwa T, Blass E, Jetton D, Maxfield LF, Borducchi EN, Badamchi-Zadeh A, Handley S, Zhao G, Virgin HW, Havenga MJ, and Barouch DH
- Subjects
- A549 Cells, Animals, Humans, Macaca mulatta, Mice, Adenoviridae genetics, Adenoviridae immunology, Adenovirus Vaccines genetics, Adenovirus Vaccines immunology, Cloning, Molecular, Genetic Vectors genetics, Genetic Vectors immunology, Immunogenicity, Vaccine genetics
- Abstract
Human and chimpanzee adenovirus vectors are being developed to circumvent preexisting antibodies against common adenovirus vectors such as Ad5. However, baseline immunity to these vectors still exists in human populations. Traditional cloning of new adenovirus vaccine vectors is a long and cumbersome process that takes 2 months or more and that requires rare unique restriction enzyme sites. Here we describe a novel, restriction enzyme-independent method for rapid cloning of new adenovirus vaccine vectors that reduces the total cloning procedure to 1 week. We developed 14 novel adenovirus vectors from rhesus monkeys that can be grown to high titers and that are immunogenic in mice. All vectors grouped with the unusual adenovirus species G and show extremely low seroprevalence in humans. Rapid cloning of novel adenovirus vectors is a promising approach for the development of new vector platforms. Rhesus adenovirus vectors may prove useful for clinical development. IMPORTANCE To overcome baseline immunity to human and chimpanzee adenovirus vectors, we developed 14 novel adenovirus vectors from rhesus monkeys. These vectors are immunogenic in mice and show extremely low seroprevalence in humans. Rhesus adenovirus vectors may prove useful for clinical development., (Copyright © 2018 Abbink et al.)
- Published
- 2018
- Full Text
- View/download PDF
49. Measurement of hepcidin isoforms in human serum by liquid chromatography with high resolution mass spectrometry.
- Author
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Handley S, Couchman L, Sharp P, Macdougall I, and Moniz C
- Subjects
- Calibration, Carbon Isotopes, Chromatography, Liquid instrumentation, Humans, Limit of Detection, Mass Spectrometry instrumentation, Nitrogen Isotopes, Protein Isoforms, Reference Standards, Reproducibility of Results, Chromatography, Liquid methods, Hepcidins blood, Mass Spectrometry methods
- Abstract
Aim: Hepcidin-25 is the master regulator of iron homeostasis. N-truncated isoforms of hepcidin-25 have been identified (hepcidin-20, -22, -24), although data on the concentrations of these isoforms are sparse., Materials & Methods: Serum was mixed with aqueous formic acid, and the supernatant loaded onto a 96-well-SPE-plate. Eluted analytes were analyzed using LC-HR-MS. Forty-seven paired dipotassium-EDTA human plasma and serum samples were analyzed., Results: The LLOQ was 1 μg/l (all analytes). Accuracy and precision were acceptable. There was a good correlation (R
2 >0.90, all analytes) between matrices. The median (range) serum hepcidin-20, -22, -24 and -25 concentrations measured were 4 (1-40), 8 (2-20), 8 (1-50) and 39 (1-334) μg/l, respectively., Conclusion: LC-HR-MS is widely applicable to the measurement of hepcidin-25, and truncated isoforms.- Published
- 2017
- Full Text
- View/download PDF
50. Systematic review of family functioning in families of children and adolescents with chronic pain.
- Author
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Lewandowski AS, Palermo TM, Stinson J, Handley S, and Chambers CT
- Subjects
- Adolescent, Child, Chronic Disease, Female, Humans, Male, Young Adult, Children with Disabilities psychology, Family Health, Pain psychology
- Abstract
Unlabelled: Disturbances in family functioning have been identified in youth with chronic pain and are associated with worse child physical and psychological functioning. Assessment measures of family functioning used in research and clinical settings vary. This systematic review summarizes studies investigating relationships among family functioning, pain, and pain-related disability in youth with chronic pain. Sixteen articles were reviewed. All studies were cross-sectional; 7 utilized between-group comparisons (chronic pain versus healthy/control) and 12 examined within-group associations among family functioning, pain, and/or pain-related disability. Studies represented youth with various pain conditions (eg, headache, abdominal pain, fibromyalgia) ages 6 to 20 years. Findings revealed group differences in family functioning between children with chronic pain and healthy control subjects in 5 of 7 studies. Significant associations emerged among family variables and pain-related disability in 6 of 9 studies with worse family functioning associated with greater child disability; relationships between family functioning and children's pain were less consistent. Different patterns of results emerged depending on family functioning measure used. Overall, findings showed that families of children with chronic pain generally have poorer family functioning than healthy populations and that pain-related disability is more consistently related to family functioning than pain intensity., Perspective: This review highlights the importance of family factors in pain-related disability in youth with chronic pain. Results suggest that family-level variables may be an important target for intervention. Family functioning measures showed significant variation, and researchers should take this into account when selecting instruments for use in research and clinical settings., (Copyright © 2010 American Pain Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
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