179 results on '"Huang, Te-Din"'
Search Results
2. First report of Pseudomonas aeruginosa strains co-harboring blaNDM-blaVIM and blaVIM-blaIMP metallo‑β‑lactamase genes in Morocco.
- Author
-
Benzaarate Ihssane, El Otmani Fatima, Khazaz Aboubakr, Bourjilat Fatna, Timinouni Mohammed, Bogaerts Pierre, Huang Te-Din, and Nayme Kaotar
- Subjects
Microbiology ,QR1-502 - Published
- 2023
- Full Text
- View/download PDF
3. Emergence of Escherichia coli ST131 carrying carbapenemase genes, European Union/European Economic Area, August 2012 to May 2024.
- Author
-
Kohlenberg, Anke, Svartström, Olov, Apfalter, Petra, Hartl, Rainer, Bogaerts, Pierre, Huang, Te-Din, Chudejova, Katerina, Malisova, Lucia, Eisfeld, Jessica, Sandfort, Mirco, Hammerum, Anette M., Roer, Louise, Räisänen, Kati, Dortet, Laurent, Bonnin, Rémy A., Tóth, Ákos, Tóth, Kinga, Clarke, Christina, Cormican, Martin, and Griškevičius, Algirdas
- Published
- 2024
- Full Text
- View/download PDF
4. Comparison of testing methods assessing the in vitro efficacy of the combination of aztreonam with avibactam on multidrug-resistant Gram-negative bacilli
- Author
-
Deckers, Corentin, primary, Bélik, Florian, additional, Denis, Olivier, additional, Bogaerts, Pierre, additional, Montesinos, Isabel, additional, Berhin, Catherine, additional, Bouchahrouf, Warda, additional, Hoebeke, Martin, additional, Evrard, Stephanie, additional, Gilliard, Nicolas, additional, Okur, Merve, additional, and Huang, Te-Din, additional
- Published
- 2024
- Full Text
- View/download PDF
5. Pseudomonas aeruginosa antimicrobial susceptibility profiles, resistance mechanisms and international clonal lineages:update from ESGARS-ESCMID/ISARPAE Group
- Author
-
Oliver, Antonio, Rojo-Molinero, Estrella, Arca-Suarez, Jorge, Beşli, Yeşim, Bogaerts, Pierre, Cantón, Rafael, Cimen, Cansu, Croughs, Peter D., Denis, Olivier, Giske, Christian G., Graells, Tíscar, Daniel Huang, Te Din, Iorga, Bogdan I., Karatuna, Onur, Kocsis, Béla, Kronenberg, Andreas, López-Causapé, Carla, Malhotra-Kumar, Surbhi, Martínez, Luis Martínez, Mazzariol, Annarita, Meyer, Sylvain, Naas, Thierry, Notermans, Daan W., Oteo-Iglesias, Jesús, Pedersen, Torunn, Pirš, Mateja, Poeta, Patricia, Poirel, Laurent, Pournaras, Spyros, Sundsfjord, Arnfinn, Szabó, Dora, Tambić-Andrašević, Arjana, Vatcheva-Dobrevska, Rossitza, Vitkauskienė, Astra, Jeannot, Katy, Oliver, Antonio, Rojo-Molinero, Estrella, Arca-Suarez, Jorge, Beşli, Yeşim, Bogaerts, Pierre, Cantón, Rafael, Cimen, Cansu, Croughs, Peter D., Denis, Olivier, Giske, Christian G., Graells, Tíscar, Daniel Huang, Te Din, Iorga, Bogdan I., Karatuna, Onur, Kocsis, Béla, Kronenberg, Andreas, López-Causapé, Carla, Malhotra-Kumar, Surbhi, Martínez, Luis Martínez, Mazzariol, Annarita, Meyer, Sylvain, Naas, Thierry, Notermans, Daan W., Oteo-Iglesias, Jesús, Pedersen, Torunn, Pirš, Mateja, Poeta, Patricia, Poirel, Laurent, Pournaras, Spyros, Sundsfjord, Arnfinn, Szabó, Dora, Tambić-Andrašević, Arjana, Vatcheva-Dobrevska, Rossitza, Vitkauskienė, Astra, and Jeannot, Katy
- Published
- 2024
6. Diagnostic Value of Serum Biomarkers for Invasive Aspergillosis in Haematologic Patients.
- Author
-
Montesinos, Isabel, Albichr, Imane Saad, Collinge, Elodie, Delaere, Bénédicte, Huang, Te-Din, Bogaerts, Pierre, Deckers, Corentin, Hamouda, Mai, Honoré, Patrick M., Bulpa, Pierre, and Sonet, Anne
- Subjects
ACUTE myeloid leukemia ,MYELODYSPLASTIC syndromes ,ASPERGILLOSIS ,MIXED infections ,ASPERGILLUS - Abstract
Background: Invasive aspergillosis (IA) is a significant cause of morbidity and mortality in patients with haematological malignancies. Accurate diagnosis of IA is challenging due to non-specific symptoms and the impact of antifungal prophylaxis on biomarker sensitivity. Methods: This retrospective study evaluated the diagnostic performance of three serum biomarkers: Aspergillus Galactomannan Ag VirClia Monotest
® (VirClia), Wako β-D-Glucan Test® (Wako BDG), and MycoGENIE Real-Time PCR® (MycoGENIE PCR). True positives were defined as patients with proven or probable IA (n = 14), with a positive Platelia Aspergillus Antigen® (Platelia) serving as a mycological criterion. True negatives were identified as patients with a positive Platelia assay but classified as non-probable IA (n = 10) and outpatients who consistently tested negative with the Platelia test throughout the study period (n = 20). Results: Most patients diagnosed with proven or probable IA were acute myeloid leukaemia or myelodysplastic syndrome patients receiving mould-active antifungal prophylaxis or treatment (71%). VirClia demonstrated high sensitivity (100%) for detecting IA, with a specificity of 83%. Wako BDG and MycoGENIE PCR showed lower sensitivities for IA (57% and 64%, respectively). MycoGENIE PCR detected Aspergillus spp. and Mucorales in two patients. Conclusions: Accurate diagnosis of IA remains challenging, especially in patients who have received mould-active antifungal treatment. VirClia showed comparable performance to Platelia, suggesting its potential for routine use. However, Wako BDG and MycoGENIE PCR results were less favourable in our study cohort. Nevertheless, MycoGENIE PCR detected two probable co-infections with Aspergillus spp. and Mucorales. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
7. Multicentre interlaboratory analysis of routine susceptibility testing with a challenge panel of resistant strains
- Author
-
Deckers, Corentin, Soleimani, Reza, Denis, Olivier, Bogaerts, Pierre, BERHIN, Catherine, Rodríguez-Villalobos, Hector, Descy, Julie, Hallin, Marie, Nonhoff, Claire, Desmet, Stefanie, Magerman, Koen, Vanden Abeele, Anne Marie, Lissoir, Bénédicte, Matheeussen, Veerle, Vernelen, Kris, Huang, Te-Din, Belgian National Antibiogram Committee, Rodriguez-Villalobos, Hector/0000-0003-3041-1591, DECKERS, Corentin/0000-0003-2421-6669, Matheeussen, Veerle/0000-0003-2137-2068, Bogaerts, Pierre, Soleimani, Reza, Vernelen, Kris, Descy, Julie, Rodriguez-Villalobos, Hector, Nonhoff, Claire, MAGERMAN, Koen, Matheeussen, Veerle, Denis, Olivier, Van den Abeele , Anne Marie, Lissoir, Benedicte, Huang , Te-Din, Hallin, Marie, Deckers, Corentin, Berhin, Catherine, DE SMET, Stefanie, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, and Belgian National Antibiogram Committee
- Subjects
disk diffusion ,Microbiology (medical) ,Multidrug-resistant organisms ,automated susceptibility testing ,Pharmacology. Therapy ,Immunology ,Reproducibility of Results ,Quality control ,Microbial Sensitivity Tests ,digestive system ,Microbiology ,digestive system diseases ,QR1-502 ,Anti-Bacterial Agents ,Interlaboratory assay ,Anti-Infective Agents ,Gram-Negative Bacteria ,Immunology and Allergy ,Disk diffusion ,quality control ,Automated susceptibility testing ,multidrug-resistant organisms - Abstract
Objectives: In order to elaborate a new national challenge panel of resistant Gram-negative bacilli and Gram-positive cocci strains for the validation of routine antimicrobial susceptibility testing (AST) methods, an interlaboratory evaluation was organised. Methods: The results of 12 well-characterised multidrug-resistant strains tested by nine laboratories using local disk diffusion (DD) and automated AST (AUST) methods were compared with the reference broth microdilution method. Results: Overall categorical agreement ranged from 70% to 100% both for DD and AUST and was >90% for all but one strain for all antibiotics. Conclusion: Our multicentre AST study showed good reproducibility and the panel can be used as national resistant reference strains for routine AST validation. (C) 2022 The Author(s). Published by Elsevier Ltd on behalf of International Society for Antimicrobial Chemotherapy. The Belgian national reference centre is supported in part by the Belgian Ministry of Social Affairs through a fund within the national health insurance system (INAMI-RIZIV). The authors thank the members of the Belgian National Antimicrobial Susceptibility Testing Committee (NAC): Olivier Denis, Stefanie Desmet, Youri Glupczynski, Marie Hallin, Te-Din Huang, Bénédicte Lissoir, Koen Magerman, Veerle Matheeussen, Pierrette Melin, Karl Mertens, Hector Rodriguez, Anne-Marie Van Den Abeele and Kris Vernelen. The authors also thank Audric Deckers for his help in compiling the statistics for this article.
- Published
- 2022
8. Elevated carbohydrate antigen 19-9 following Helicobacter suis gastritis and normalisation after eradication: first case report and review of the literature
- Author
-
Capirchio, Lena, Huang, Te-Din, De Witte, C, Haesebrouck, F, Fervaille, Caroline, GILLAIN, Cédric, Rahier, Jean-François, De Ronde, Thierry, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - SSS/IREC/GAEN - Pôle d'Hépato-gastro-entérologie, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Service de gastro-entérologie, and UCL - (MGD) Service d'anatomie pathologique
- Subjects
Male ,Helicobacter pylori ,chronic dyspeptic symptoms ,Gastritis ,Helicobacter heilmannii ,non-helicobacter pylori helicobacter ,Carbohydrates ,Humans ,Intraabdominal Infections ,Aged ,Helicobacter Infections - Abstract
Carbohydrate antigen 19-9 (CA 19-9) is a biological marker used to diagnose and monitor the progression of various cancers. Elevated CA 19-9 has also been sporadically observed in Helicobacter pylori infected patients. Similar to H. pylori, animal- hosted non-H. pylori Helicobacter (NHPH) species can induce gastroduodenal lesions in humans. We report the first case of CA 19-9 elevation related to H. suis gastritis and its normalisation after eradication. A CA 19-9 screening prescribed as part of a regular check up by the general practitioner was found elevated in a 68-year-old man presenting chronic dyspeptic symptoms. Medical investigations were negative for presence of neoplasia or biliary obstruction. Upper gastrointestinal endoscopy confirmed the presence of chronic gastritis and H. suis was identified in gastric biopsies. The standard treatment for H. pylori successfully eradicated H. suis with normalisation of CA 19-9 levels. In addition to H. pylori, infection with NHPH species should be considered as an additional cause of elevated CA19-9.
- Published
- 2022
- Full Text
- View/download PDF
9. Multicenter inter-laboratory analysis of routine susceptibility testing with a challenge panel of resistant strains.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Deckers, Corentin, Soleimani, Reza, Denis, Olivier, Bogaerts, Pierre, BERHIN, Catherine, Rodríguez-Villalobos, Hector, Descy, Julie, Hallin, Marie, Nonhoff, Claire, Desmet, Stefanie, Magerman, Koen, Vanden Abeele, Anne Marie, Lissoir, Bénédicte, Matheeussen, Veerle, Vernelen, Kris, Huang, Te-Din, Belgian National Antibiogram Committee, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Deckers, Corentin, Soleimani, Reza, Denis, Olivier, Bogaerts, Pierre, BERHIN, Catherine, Rodríguez-Villalobos, Hector, Descy, Julie, Hallin, Marie, Nonhoff, Claire, Desmet, Stefanie, Magerman, Koen, Vanden Abeele, Anne Marie, Lissoir, Bénédicte, Matheeussen, Veerle, Vernelen, Kris, Huang, Te-Din, and Belgian National Antibiogram Committee
- Abstract
To elaborate a new national challenge panel of resistant GNB/GPC strains for the validation of routine antimicrobial susceptibility testing (AST) methods, an interlaboratory evaluation was organized. Results of 12 well-characterized MDR strains tested by 9 laboratories using local disk diffusion (DD) and automated AST (AUST) methods were compared to the reference broth microdilution. Overall categorical agreements (CA) ranged from 70% to 100% for both DD and AUST and were > 90% for all but one strain for all antibiotics. Our multicenter AST study showed good reproducibility and the panel can be used as national resistant reference strains for routine AST validation.
- Published
- 2022
10. Characterization of hypervirulent Klebsiella pneumoniae isolates in Belgium.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Anantharajah, Ahalieyah, Deltombe, Matthieu, de Barsy, Marie, Evrard, Stéphanie, Denis, Olivier, Bogaerts, Pierre, Hallin, Marie, Miendje Deyi, Véronique Yvette, Pierard, Denis, Bruynseels, Peggy, Boelens, Jerina, Glupczynski, Gerald, Huang, Te-Din, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Anantharajah, Ahalieyah, Deltombe, Matthieu, de Barsy, Marie, Evrard, Stéphanie, Denis, Olivier, Bogaerts, Pierre, Hallin, Marie, Miendje Deyi, Véronique Yvette, Pierard, Denis, Bruynseels, Peggy, Boelens, Jerina, Glupczynski, Gerald, and Huang, Te-Din
- Abstract
Hypervirulent Klebsiella pneumoniae (hvKp) raised concern worldwide. We studied 22 hvKp clinical invasive isolates referred to the Belgian national reference laboratory between 2014 and 2020. Sixty-four percent of the isolates expressed K2 capsular serotype and belonged to 7 different MLST lineages, while 32% expressed K1 (all belonging to ST23) and were associated with liver abscesses. Primary extra-hepatic infections were reported in 36% and sepsis for 95% of the patients with 30% of deaths. Improved clinical and microbiological diagnostics are required as hvKp may represent an underestimated cause of community-acquired invasive infections in Belgium.
- Published
- 2022
11. Elevated carbohydrate antigen 19-9 following Helicobacter suis gastritis and normalisation after eradication: first case report and review of the literature.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - SSS/IREC/GAEN - Pôle d'Hépato-gastro-entérologie, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Service de gastro-entérologie, UCL - (MGD) Service d'anatomie pathologique, Capirchio, Lena, Huang, Te-Din, De Witte, C, Haesebrouck, F, Fervaille, Caroline, GILLAIN, Cédric, Rahier, Jean-François, De Ronde, Thierry, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - SSS/IREC/GAEN - Pôle d'Hépato-gastro-entérologie, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Service de gastro-entérologie, UCL - (MGD) Service d'anatomie pathologique, Capirchio, Lena, Huang, Te-Din, De Witte, C, Haesebrouck, F, Fervaille, Caroline, GILLAIN, Cédric, Rahier, Jean-François, and De Ronde, Thierry
- Abstract
Carbohydrate antigen 19-9 (CA 19-9) is a biological marker used to diagnose and monitor the progression of various cancers. Elevated CA 19-9 has also been sporadically observed in Helicobacter pylori infected patients. Similar to H. pylori, animalhosted non-H. pylori Helicobacter (NHPH) species can induce gastroduodenal lesions in humans. We report the first case of CA 19-9 elevation related to H. suis gastritis and its normalisation after eradication. A CA 19-9 screening prescribed as part of a regular check up by the general practitioner was found elevated in a 68-year-old man presenting chronic dyspeptic symptoms. Medical investigations were negative for presence of neoplasia or biliary obstruction. Upper gastrointestinal endoscopy confirmed the presence of chronic gastritis and H. suis was identified in gastric biopsies. The standard treatment for H. pylori successfully eradicated H. suis with normalisation of CA 19-9 levels. In addition to H. pylori, infection with NHPH species should be considered as an additional cause of elevated CA19-9.
- Published
- 2022
12. Multicentre interlaboratory analysis of routine susceptibility testing with a challenge panel of resistant strains.
- Author
-
UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Deckers, Corentin, Soleimani, Reza, Denis, Olivier, Bogaerts, Pierre, Berhin, Catherine, Rodríguez-Villalobos, Hector, Descy, Julie, Hallin, Marie, Nonhoff, Claire, Desmet, Stefanie, Magerman, Koen, Van den Abeele, Anne Marie, Lissoir, Bénédicte, Matheeussen, Veerle, Vernelen, Kris, Huang, Te-Din, Belgian National Antibiogram Committee, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Deckers, Corentin, Soleimani, Reza, Denis, Olivier, Bogaerts, Pierre, Berhin, Catherine, Rodríguez-Villalobos, Hector, Descy, Julie, Hallin, Marie, Nonhoff, Claire, Desmet, Stefanie, Magerman, Koen, Van den Abeele, Anne Marie, Lissoir, Bénédicte, Matheeussen, Veerle, Vernelen, Kris, Huang, Te-Din, and Belgian National Antibiogram Committee
- Abstract
In order to elaborate a new national challenge panel of resistant Gram-negative bacilli and Gram-positive cocci strains for the validation of routine antimicrobial susceptibility testing (AST) methods, an interlaboratory evaluation was organised. The results of 12 well-characterised multidrug-resistant strains tested by nine laboratories using local disk diffusion (DD) and automated AST (AUST) methods were compared with the reference broth microdilution method. Overall categorical agreement ranged from 70% to 100% both for DD and AUST and was >90% for all but one strain for all antibiotics. Our multicentre AST study showed good reproducibility and the panel can be used as national resistant reference strains for routine AST validation.
- Published
- 2022
13. Detection and Characterization of VIM-52, a New Variant of VIM-1 from a Klebsiella pneumoniae Clinical Isolate
- Author
-
de Barsy, Marie, primary, Mercuri, Paola Sandra, additional, Oueslati, Saoussen, additional, Elisée, Eddy, additional, Huang, Te-Din, additional, Sacré, Pierre, additional, Iorga, Bogdan I., additional, Naas, Thierry, additional, Galleni, Moreno, additional, and Bogaerts, Pierre, additional
- Published
- 2021
- Full Text
- View/download PDF
14. Helicobacter pylori resistance to antibiotics in Europe in 2018 and its relationship to antibiotic consumption in the community
- Author
-
Megraud, Francis, Bruyndonckx, Robin, Coenen, Samuel, Wittkop, Linda, Huang, Te-Din, Hoebeke, Martin, Benejat, Lucie, Lehours, Philippe, Goossens, Herman, Glupczynski, youri, European Helicobacter Pylori Antimicrobial Susceptibility Testing Working, Group, Bordeaux population health (BPH), Université de Bordeaux (UB)-Institut de Santé Publique, d'Épidémiologie et de Développement (ISPED)-Institut National de la Santé et de la Recherche Médicale (INSERM), European Helicobacter Pylori, DARMIGNY, SANDRINE, Bordeaux Research In Translational Oncology [Bordeaux] (BaRITOn), Université de Bordeaux (UB)-CHU Bordeaux [Bordeaux]-Institut National de la Santé et de la Recherche Médicale (INSERM), Hôpital Pellegrin, CHU Bordeaux [Bordeaux]-Groupe hospitalier Pellegrin, Vaccine & Infectious Disease Institute [Antwerp, Belgium] (VAXINFECTIO), University of Antwerp (UA), Hasselt University (UHasselt), Institut de Santé Publique, d'Epidémiologie et de Développement (ISPED), Université Bordeaux Segalen - Bordeaux 2, Université de Bordeaux (UB), CHU UCL Namur, European Helicobacter pylori Antimicrobial Susceptibility Testing Working Group: Athanasios Makristathis, Lyudmila Boyanova, Ante Tonkic, Marija Tonkic, Leif Andersen, Benjamin Blumel, Erick Glocker, Ina Tammer, Alexander Link, Sebastian Suerbaum, Karl Dichtl, Andreas Mentis, Beatriz Marintez-Gonzales, Sinead Smith, Deirdre McNamara, Maria Pina Dore, Rosa Monno, Antonio Lippolis, Dace Rudzite, Marcis Leja, Juozas Kupcinskas, Kjetil K Melby, Grazyna Gosciniak, Tomasz M Karpinski, Monica Oleastro, Samo Jeverica, Xavier Calvet, Maria José Ramirez-Lázaro, Milagrosa Montes Ros, Ana Morilla, Sjoukje Boonstra, Peter M Schneeberger, UCL - SSS/IREC/MONT - Pôle Mont Godinne, and UCL - (MGD) Laboratoire de biologie clinique
- Subjects
0301 basic medicine ,medicine.medical_specialty ,medicine.drug_class ,[SDV]Life Sciences [q-bio] ,Gastric diseases ,030106 microbiology ,Antibiotics ,Drug resistance ,antibiotics ,WATER ,SURVEILLANCE ,ERADICATION ,MULTICENTER ,PREVALENCE ,Helicobacter pylori infection ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Levofloxacin ,Clarithromycin ,Internal medicine ,medicine ,drug resistance ,biology ,business.industry ,Gastroenterology ,gastric diseases ,Helicobacter pylori ,biology.organism_classification ,Quinolone ,bacterial infections and mycoses ,3. Good health ,[SDV] Life Sciences [q-bio] ,Metronidazole ,030211 gastroenterology & hepatology ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,Human medicine ,business ,medicine.drug - Abstract
ObjectiveOur aim was to prospectively assess the antibiotic resistance rates in Helicobacter pylori strains in Europe in 2018 and to study the link between antibiotic consumption in the community and H. pylori resistance levels in the different countries.DesignThe proportion of primary antibiotic resistance cases of H. pylori and their corresponding risk factors were investigated in 24 centres from 18 European countries according to a standardised protocol. Data on antibiotic consumption in the community were collected for the period 2008–2017. The link between antibiotic consumption and resistance data was assessed using generalised linear mixed models. The model with the best fit was selected by means of the Akaike Information Criterion.ResultsH. pylori resistance rates for the 1211 adult patients included were 21.4% for clarithromycin, 15.8% for levofloxacin and 38.9% for metronidazole and were significantly higher in Central/Western and Southern than in the Northern European countries.The best model fit was obtained for the Poisson distribution using 2013 consumption data. A significant association was found between H. pylori clarithromycin resistance and consumption in the community of macrolides (p=0.0003) and intermediate-acting macrolides (p=0.005), and between levofloxacin resistance and consumption of quinolones (p=0.0002) and second-generation quinolones (p=0.0003).ConclusionThis study confirms the positive correlation between macrolide and quinolone consumption in the community and corresponding H. pylori resistance in European countries. Hence, H. pylori treatment with clarithromycin and levofloxacin should not be started without susceptibility testing in most European countries.
- Published
- 2021
- Full Text
- View/download PDF
15. Les bactéries multi-résistantes aux antibiotiques en MRS: historique et recommandations pratiques
- Author
-
Schoevaerdts, Didier, Sibille, François-Xavier, Denis, Olivier, Huang, Te-Din, and UCL - SSS/LDRI - Louvain Drug Research Institute
- Published
- 2021
16. Detection and characterization of VIM-52, a new variant of VIM-1 from clinical isolate
- Author
-
de Barsy, Marie, Mercuri, Paola Sandra, Oueslati, Saoussen, Elisée, Eddy, Huang, Te-Din, Sacré, Pierre, Iorga, Bogdan I, Naas, Thierry, Galleni, Moreno, Bogaerts, Pierre, UCL - SSS/IREC/MONT - Pôle Mont Godinne, and UCL - (MGD) Laboratoire de biologie clinique
- Abstract
Over the last two decades, antimicrobial resistance has become a global health problem. In Gram-negative bacteria, metallo-β-lactamases (MBLs), which inactivate virtually all β-lactams, increasingly contribute to this phenomenon. The aim of this study is to characterize VIM-52, a His224Arg variant of VIM-1, identified in a clinical isolate. VIM-52 conferred lower MICs to cefepime and ceftazidime as compared to VIM-1. These results were confirmed by steady state kinetic measurements, where VIM-52 yielded a lower activity towards ceftazidime and cefepime but not against carbapenems. Residue 224 is part of the L10 loop (residues 221-241), which borders the active site. As Arg 224 and Ser 228 are both playing an important and interrelated role in enzymatic activity, stability and substrate specificity for the MBLs, targeted mutagenesis at both positions were performed and further confirmed their crucial role for substrate specificity.
- Published
- 2021
17. Cross-border spread of - and -positive : a European collaborative analysis of whole genome sequencing and epidemiological data, 2014 to 2019
- Author
-
Ludden, Catherine, Lötsch, Felix, Alm, Erik, Kumar, Narender, Johansson, Karin, Albiger, Barbara, Huang, Te-Din, Denis, Olivier, Hammerum, Anette M, Hasman, Henrik, Jalava, Jari, Räisänen, Kati, Dortet, Laurent, Jousset, Agnès B, Gatermann, Sören, Haller, Sebastian, Cormican, Martin, Brennan, Wendy, Del Grosso, Maria, Monaco, Monica, Schouls, Leo, Samuelsen, Ørjan, Pirš, Mateja, Cerar, Tjaša, Oteo-Iglesias, Jésus, Pérez-Vázquez, Maria, Sjöström, Karin, Edquist, Petra, Hopkins, Katie L, Struelens, Marc J, Palm, Daniel, Monnet, Dominique L, Kohlenberg, Anke, UCL - (MGD) Laboratoire de biologie clinique, and UCL - SSS/IREC/MONT - Pôle Mont Godinne
- Subjects
carbapenemase ,whole genome sequencing ,surveillance ,cross-border import ,NDM-1 ,OXA-48, NDM-1 ,Klebsiella pneumonia ,carbapenem-resistant Enterobacterales ,OXA-48 ,geographic locations - Abstract
Analysis of sequencing data for 143 blaNDM-1- and blaOXA-48-positive Klebsiella pneumoniae isolates from 13 European national collections and the public domain resulted in the identification of 15 previously undetected multi-country transmission clusters. For 10 clusters, cases had prior travel/hospitalisation history in countries outside of the European Union including Egypt, Iran, Morocco, Russia, Serbia, Tunisia and Turkey. These findings highlight the benefit of European whole genome sequencing-based surveillance and data sharing for control of antimicrobial resistance.
- Published
- 2020
18. Cross-border spread of blaN DM-1- and blaOX A-48 positive Klebsiella pneumoniae: a European collabo-rative analysis of whole genome sequencing and epidemiological data, 2014 to 2019
- Author
-
Ludden, Catherine, Lötsch, Felix, Alm, Erik, Kumar, Narender, Johansson, Karin, Albiger, Barbara, Huang, Te-Din, Denis, Olivier, Hammerum, Anette M, Hasman, Henrik, Jalava, Jari, Räisänen, Kati, Dortet, Laurent, Jousset, Agnès B, Gatermann, Sören, Haller, Sebastian, Cormican, Martin, Brennan, Wendy, Del Grosso, Maria, Monaco, Monica, Schouls, Leo, Samuelsen, Ørjan, Pirš, Mateja, Cerar, Tjaša, Oteo-Iglesias, Jésus, Pérez-Vázquez, Maria, Sjöström, Karin, Edquist, Petra, Hopkins, Katie L, Struelens, Marc J, Palm, Daniel, Monnet, Dominique L, and Kohlenberg, Anke
- Subjects
ddc:610 ,610 Medizin und Gesundheit ,geographic locations - Abstract
Analysis of sequencing data for 143 blaNDM-1- and blaOXA-48-positive Klebsiella pneumoniae isolates from 13 European national collections and the public domain resulted in the identification of 15 previously undetected multi-country transmission clusters. For 10 clusters, cases had prior travel/hospitalisation history in countries outside of the European Union including Egypt, Iran, Morocco, Russia, Serbia, Tunisia and Turkey. These findings highlight the benefit of European whole genome sequencing-based surveillance and data sharing for control of antimicrobial resistance.
- Published
- 2020
19. Les bactéries multi-résistantes aux antibiotiques en MRS: historique et recommandations pratiques
- Author
-
UCL - SSS/LDRI - Louvain Drug Research Institute, Schoevaerdts, Didier, Sibille, François-Xavier, Denis, Olivier, Huang, Te-Din, UCL - SSS/LDRI - Louvain Drug Research Institute, Schoevaerdts, Didier, Sibille, François-Xavier, Denis, Olivier, and Huang, Te-Din
- Published
- 2021
20. Evaluation of the Novodiag CarbaR+, a Novel Integrated Sample to Result Platform for the Multiplex Qualitative Detection of Carbapenem and Colistin Resistance Markers.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Girlich, Delphine, Bogaerts, Pierre, Bouchahrouf, Warda, Bernabeu, Sandrine, Langlois, Isabelle, Begasse, Christine, Arangia, Nicolas, Dortet, Laurent, Huang, Te-Din, Glupczynski, Gerald, Naas, Thierry, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Girlich, Delphine, Bogaerts, Pierre, Bouchahrouf, Warda, Bernabeu, Sandrine, Langlois, Isabelle, Begasse, Christine, Arangia, Nicolas, Dortet, Laurent, Huang, Te-Din, Glupczynski, Gerald, and Naas, Thierry
- Abstract
This study evaluated the performance of the Novodiag CarbaR+ an automated qualitative nucleic acid-based diagnostic assay detecting the , , , , , , , , and IS1 associated carbapenemase genes and colistin resistance gene from clinical isolates or directly from rectal swabs. CarbaR+ was evaluated on 201 clinical isolates and on 100 rectal swabs (80 selected swabs from patients that were evaluated by culture method and/or Xpert Carba-R assay and 20 spiked samples). PCR-sequencing on colonies was considered as the gold standard. The CarbaR+ detected all the variants of the targeted resistance genes (39 , 30 , 20 , 19 , 15 , 19 , 13 , 4 , 8 IS1-, and 3 -like genes) with sensitivity and specificity of 98.2% and 99.7%, respectively. On the 80 rectal swabs, 71 CarbaR+ results were fully concordant with the results on selective culture media (66 positive samples with 1 to 3 carbapenemases and 5 negative samples). In eight rectal swabs, CarbaR+ identified additional carbapenemase genes. One false negative result with an producing-OXA-181 was observed and one CarbaR+ result for OXA-48 was in agreement with Xpert Carba-R assay, without growth on culture media. A concordance of 100% was observed on spiked samples. Novodiag CarbaR+ is a random-access fully automated system that achieves excellent performances for the detection of carbapenemase and/or colistin resistance determinants either from cultured clinical isolates or directly from rectal swabs in 80 minutes.
- Published
- 2021
21. Helicobacter pylori resistance to antibiotics in Europe in 2018 and its relationship to antibiotic consumption in the community.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Megraud, Francis, Bruyndonckx, Robin, Coenen, Samuel, Wittkop, Linda, Huang, Te-Din, Hoebeke, Martin, Bénéjat, Lucie, Lehours, Philippe, Goossens, Herman, Glupczynski, Gerald, European Helicobacter pylori Antimicrobial Susceptibility Testing Working Group, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Megraud, Francis, Bruyndonckx, Robin, Coenen, Samuel, Wittkop, Linda, Huang, Te-Din, Hoebeke, Martin, Bénéjat, Lucie, Lehours, Philippe, Goossens, Herman, Glupczynski, Gerald, and European Helicobacter pylori Antimicrobial Susceptibility Testing Working Group
- Abstract
Our aim was to prospectively assess the antibiotic resistance rates in strains in Europe in 2018 and to study the link between antibiotic consumption in the community and resistance levels in the different countries. The proportion of primary antibiotic resistance cases of and their corresponding risk factors were investigated in 24 centres from 18 European countries according to a standardised protocol. Data on antibiotic consumption in the community were collected for the period 2008-2017. The link between antibiotic consumption and resistance data was assessed using generalised linear mixed models. The model with the best fit was selected by means of the Akaike Information Criterion. resistance rates for the 1211 adult patients included were 21.4% for clarithromycin, 15.8% for levofloxacin and 38.9% for metronidazole and were significantly higher in Central/Western and Southern than in the Northern European countries.The best model fit was obtained for the Poisson distribution using 2013 consumption data. A significant association was found between clarithromycin resistance and consumption in the community of macrolides (p=0.0003) and intermediate-acting macrolides (p=0.005), and between levofloxacin resistance and consumption of quinolones (p=0.0002) and second-generation quinolones (p=0.0003). This study confirms the positive correlation between macrolide and quinolone consumption in the community and corresponding resistance in European countries. Hence, treatment with clarithromycin and levofloxacin should not be started without susceptibility testing in most European countries.
- Published
- 2021
22. Rapid COVID-19 antigenic tests: Usefulness of a modified method for diagnosis.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Soleimani, Reza, Deckers, Corentin, Huang, Te-Din, Bogaerts, Pierre, Evrard, Stéphanie, WALLEMME, Isaline, HABIB, Boutaina, ROUZE, Pauline, Denis, Olivier, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Soleimani, Reza, Deckers, Corentin, Huang, Te-Din, Bogaerts, Pierre, Evrard, Stéphanie, WALLEMME, Isaline, HABIB, Boutaina, ROUZE, Pauline, and Denis, Olivier
- Abstract
The current reliable recommended test for COVID-19 diagnosis is RT-qPCR. Rapid antigen test devices could be useful as they are less expensive, faster without the need of specialized laboratories to perform the test. We report the performances of 2 rapid immunochromatographic antigen testing devices compared to RT-qPCR for SARS-CoV-2 detection in clinical samples. We carried out a lateral-flow tests study on 401 nasopharyngeal swab samples from non-duplicated suspected COVID-19 subjects. An equal volume of UTM-containing samples (dilution ratio = 1:15) were added to manufacturer's extraction buffer solution (dilution ratio = 1:2) and analyzed on BioSpeedia COVID19Speed-Antigen Test and on Abbott Panbio COVID-19 Ag Rapid Test, devices. Qualitative results were compared to those obtained by the RT-qPCR (Allplex™ SARS-CoV-2 Assay Seegene). Based on our data, overall sensitivity for BioSpeedia and Panbio devices were estimated at 65.5 and 75.0 %, respectively. The sensitivity was greater for cycle threshold values less than 25 achieving 90.4 and 96.8 for BioSpeedia and Panbio devices, respectively. A perfect specificity of 100.0% was observed for both devices. BioSpeedia and Panbio, as rapid antigen tests with excellent sensitivity to detect high viral loads, appeared to be reliable alternatives to RT-qPCR especially valuable when molecular testing capacity may be saturated by overflow of samples. Given the high specificity of devices, a positive result would not require confirmation by a molecular test and would therefore allow a faster management of COVID-19-positive patients. This article is protected by copyright. All rights reserved.
- Published
- 2021
23. Improving turnaround time for identifying extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae: experience with the BD Phoenix automated system
- Author
-
Lebitasy, Massin, Huang, Te-Din, Rodriguez-Villalobos, Hector, and Simon, Anne
- Published
- 2011
- Full Text
- View/download PDF
24. Cross-border spread of blaNDM-1- and blaOXA-48-positive Klebsiella pneumoniae: a European collaborative analysis of whole genome sequencing and epidemiological data, 2014 to 2019
- Author
-
Ludden, Catherine, primary, Lötsch, Felix, additional, Alm, Erik, additional, Kumar, Narender, additional, Johansson, Karin, additional, Albiger, Barbara, additional, Huang, Te-Din, additional, Denis, Olivier, additional, Hammerum, Anette M, additional, Hasman, Henrik, additional, Jalava, Jari, additional, Räisänen, Kati, additional, Dortet, Laurent, additional, Jousset, Agnès B, additional, Gatermann, Sören, additional, Haller, Sebastian, additional, Cormican, Martin, additional, Brennan, Wendy, additional, Del Grosso, Maria, additional, Monaco, Monica, additional, Schouls, Leo, additional, Samuelsen, Ørjan, additional, Pirš, Mateja, additional, Cerar, Tjaša, additional, Oteo-Iglesias, Jésus, additional, Pérez-Vázquez, Maria, additional, Sjöström, Karin, additional, Edquist, Petra, additional, Hopkins, Katie L, additional, Struelens, Marc J, additional, Palm, Daniel, additional, Monnet, Dominique L, additional, and Kohlenberg, Anke, additional
- Published
- 2020
- Full Text
- View/download PDF
25. Analytical and clinical evaluation of four commercial SARS-CoV-2 serological immunoassays in hospitalized patients and ambulatory individuals.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Pathologie infectieuse, UCL - (MGD) Service de chirurgie orthopédique, Catry, E, JACQMIN, Hugues, Dodemont, M, Saad Albichr, I, Lardinois, Benjamin, de FAYS, Barbara, Delaere, Bénédicte, CLOSSET, Mélanie, Laurent, T, DENIS, Olivier, Galanti, Laurence, Mullier, François, Huang, Te-Din, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Pathologie infectieuse, UCL - (MGD) Service de chirurgie orthopédique, Catry, E, JACQMIN, Hugues, Dodemont, M, Saad Albichr, I, Lardinois, Benjamin, de FAYS, Barbara, Delaere, Bénédicte, CLOSSET, Mélanie, Laurent, T, DENIS, Olivier, Galanti, Laurence, Mullier, François, and Huang, Te-Din
- Abstract
This study aimed to compare four anti-SARS-CoV-2 immunoassays in populations presenting different clinical severity levels. Three populations were included: "severe-to-critical" ICU-hospitalized patients (n = 18), "mild-to-moderate" hospitalized patients (n = 16) and non-hospitalized symptomatic patients (n = 24). Four commercial immunoassays were analyzed and validated: anti-IgG ARCHITECT® (Abbott), anti-Total antibodies (Ab) VITROS® (Ortho Clinical Diagnostics), anti-IgG NovaLisa® (NovaTec Immundiagnostica) and Healgen® IgM and IgG (Zhejiang Orient Gene Biotech). Sensitivities were evaluated according to days post-symptoms onset (pso). Specificities were evaluated on SARS-CoV-2-negative control sera collected before January 2020. A majority of severe-to-critically ill patients showed detectable Ab already at day 14 and sensitivities reached 100 % after 22 days pso. For patients with "mild-to-moderate" illness, sensitivities increased by at least 5-fold from day 0 to day 14 pso. Non-hospitalized symptomatic individuals already seroconverted at day 14 days pso with 100 % sensitivities for Total Ab VITROS®. Specificities were evaluated at 97 % for ARCHITECT® and NovaLisa®, 98 % for VITROS® and at 94 % for Healgen® combined IgM and IgG. Five "severe-to-critically" ill patients presented high positive Ab levels for at least 16 weeks pso. The Ab levels and the evaluated sensitivities, representing the true positive rate, increased overtime and were related to the COVID-19 severity. Automated Total Ab immunoassay showed better sensitivities and specificity for immunological surveillance and vaccine evaluation.
- Published
- 2020
26. Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread
- Author
-
David, Sophia Reuter, Sandra Harris, Simon R. Glasner, Corinna Feltwell, Theresa Argimon, Silvia Abudahab, Khalil and Goater, Richard Giani, Tommaso Errico, Giulia Aspbury, Marianne Sjunnebo, Sara Feil, Edward J. Rossolini, Gian Maria Aanensen, David M. Grundmann, Hajo Koraqi, Andi and Lacej, Denada Apfalter, Petra Hartl, Rainer Glupczynski, Youri Huang, Te-Din Strateva, Tanya Marteva-Proevska, Yuliya and Tambic Andrasevic, Arjana Butic, Iva Pieridou-Bagatzouni, Despo Maikanti-Charalampous, Panagiota Hrabak, Jaroslav and Zemlickova, Helena Hammerum, Anette Jakobsen, Lotte Ivanova, Marina Pavelkovich, Anastasia Jalava, Jari Osterblad, Monica and Dortet, Laurent Vaux, Sophie Kaase, Martin Gatermann, Soeren G. Vatopoulos, Alkiviadis Tryfinopoulou, Kyriaki and Toth, Akos Janvari, Laura Boo, Teck Wee McGrath, Elaine and Carmeli, Yehuda Adler, Amos Pantosti, Annalisa Monaco, Monica Raka, Lul Kurti, Arsim Balode, Arta Saule, Mara and Miciuleviciene, Jolanta Mierauskaite, Aiste Perrin-Weniger, Monique Reichert, Paul Nestorova, Nina Debattista, Sonia and Mijovic, Gordana Lopicic, Milena Samuelsen, Orjan Haldorsen, Bjorg Zabicka, Dorota Literacka, Elzbieta Canica, Manuela and Manageiro, Vera Kaftandzieva, Ana Trajkovska-Dokic, Elena and Damian, Maria Lixandru, Brandusa Jelesic, Zora Trudic, Anika Niks, Milan Schreterova, Eva Pirs, Mateja Cerar, Tjasa Oteo, Jesus Aracil, Belen Giske, Christian and Sjostrom, Karin Gur, Deniz Cakar, Asli Woodford, Neil and Hopkins, Katie Wiuff, Camilla Brown, Derek J. EuSCAPE Working Grp ESGEM Study Grp
- Abstract
Public health interventions to control the current epidemic of carbapenem-resistant Klebsiella pneumoniae rely on a comprehensive understanding of its emergence and spread over a wide range of geographical scales. We analysed the genome sequences and epidemiological data of >1,700 K. pneumoniae samples isolated from patients in 244 hospitals in 32 countries during the European Survey of Carbapenemase-Producing Enterobacteriaceae. We demonstrate that carbapenemase acquisition is the main cause of carbapenem resistance and that it occurred across diverse phylogenetic backgrounds. However, 477 of 682 (69.9%) carbapenemase-positive isolates are concentrated in four clonal lineages, sequence types 11,15,101, 258/512 and their derivatives. Combined analysis of the genetic and geographic distances between isolates with different beta-lactam resistance determinants suggests that the propensity of K. pneumoniae to spread in hospital environments correlates with the degree of resistance and that carbapenemase-positive isolates have the highest transmissibility. Indeed, we found that over half of the hospitals that contributed carbapenemase-positive isolates probably experienced within-hospital transmission, and interhospital spread is far more frequent within, rather than between, countries. Finally, we propose a value of 21 for the number of single nucleotide polymorphisms that optimizes the discrimination of hospital clusters and detail the international spread of the successful epidemic lineage, ST258/512.
- Published
- 2019
27. Nosocomial outbreak of esbl-producing enterobacter cloacae among cardio-thoracic surgical patients: causes and consequences
- Author
-
Noël, A., Vastrade, Christelle, DUPONT, Serge, de Barsy, M., Huang, Te-Din, Van Maerken, T., Leroux-Roels, I., Delaere, Bénédicte, Melly, Ludovic, Rondelet, Benoît, Dransart, Christophe, Dincq, Anne-Sophie, Michaux, Isabelle, BOGAERTS, Pierre, Glupczynski, Gerald, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Pathologie infectieuse, UCL - (MGD) Service de chirurgie cardio-vasculaire et thoracique, UCL - (MGD) Service d'anesthésiologie, UCL - SSS/IREC/MEDA - Pôle de médecine aiguë, and UCL - (MGD) Services des soins intensifs
- Subjects
Microbiology (medical) ,Infectious Diseases ,General Medicine - Published
- 2019
28. Interactions between Avibactam and Ceftazidime-Hydrolyzing Class D β-Lactamases
- Author
-
Frère, Jean-Marie, primary, Bogaerts, Pierre, additional, Huang, Te-Din, additional, Stefanic, Patrick, additional, Moray, Joël, additional, Bouillenne, Fabrice, additional, and Brans, Alain, additional
- Published
- 2020
- Full Text
- View/download PDF
29. An Outpatient Clinic as a Potential Site of Transmission for an Outbreak of New Delhi Metallo-β-Lactamase-producing Klebsiella pneumoniae Sequence Type 716: A Study Using Whole-genome Sequencing
- Author
-
Heinrichs, Amélie, Argudín, María Ángeles M.A., De Mendonça, Ricardo, Deplano, Ariane, Roisin, Sandrine, Dodemont, Magali, Coussement, Julien, Filippin, Lorenzo, Dombrecht, Jill, De Bruyne, Katrien, Huang, Te-Din, Supply, Philip, Byl, Baudouin, Glupczynski, Youri, Denis, Olivier, Heinrichs, Amélie, Argudín, María Ángeles M.A., De Mendonça, Ricardo, Deplano, Ariane, Roisin, Sandrine, Dodemont, Magali, Coussement, Julien, Filippin, Lorenzo, Dombrecht, Jill, De Bruyne, Katrien, Huang, Te-Din, Supply, Philip, Byl, Baudouin, Glupczynski, Youri, and Denis, Olivier
- Abstract
Background The incidence of nosocomial infections due to carbapenem-resistant Klebsiella pneumoniae is increasing worldwide. Whole-genome sequencing (WGS) can help elucidate the transmission route of nosocomial pathogens. Methods We combined WGS and epidemiological data to analyze an outbreak of New Delhi metallo-β-lactamase (NDM)-producing K. pneumoniae that occurred in 2 Belgian hospitals situated about 50 miles apart. We characterized 74 NDM-producing K. pneumoniae isolates (9 from hospital A, 24 from hospital B, and 41 contemporary isolates from 15 other Belgian hospitals) using pulsed-field gel electrophoresis and WGS. Results A K. pneumoniae sequence type 716 clone was identified as being responsible for the outbreak with all 9 strains from hospital A and 20 of 24 from hospital B sharing a unique pulsotype and being clustered together at WGS (compared with 1 of 41 isolates from other Belgian hospitals). We identified the outpatient clinic of hospital B as the probable bridging site between the hospitals after combining epidemiological, phylogenetic, and resistome data. We also identified the patient who probably caused the transmission. In fact, all but 1 strain from hospital A carried a Tn1331-like transposon, whereas none of the hospital B isolates did. The patient from hospital A who did not have the Tn1331-like transposon was treated at the outpatient clinic of hospital B on the same day as the first NDM-producing K. pneumoniae-positive patient from hospital B. Conclusions The results from our WGS-guided investigation highlight the importance of implementing adequate infection control measures in outpatient settings, especially when healthcare delivery moves from acute care facilities to outpatient clinics., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2019
30. Prevalence of multidrug-resistant organisms in nursing homes in Belgium in 2015
- Author
-
Latour, Katrien, Huang, Te-Din, Jans, Béatrice, Berhin, Catherine, Bogaerts, Pierre, Noel, Audrey, Nonhoff, Claire, Dodemont, Magali, Denis, Olivier, Ieven, Margareta, Loens, Katherine, Schoevaerdts, Didier, Catry, Boudewijn, Glupczynski, Youri, Latour, Katrien, Huang, Te-Din, Jans, Béatrice, Berhin, Catherine, Bogaerts, Pierre, Noel, Audrey, Nonhoff, Claire, Dodemont, Magali, Denis, Olivier, Ieven, Margareta, Loens, Katherine, Schoevaerdts, Didier, Catry, Boudewijn, and Glupczynski, Youri
- Abstract
Objectives Following two studies conducted in 2005 and 2011, a third prevalence survey of multidrug-resistant microorganisms (MDRO) was organised in Belgian nursing homes (NHs) using a similar methodology. The aim was to measure the prevalence of carriage of methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant enterococci (VRE), extended-spectrum β-lactamase producing Enterobacteriaceae (ESBLE) and carbapenemase-producing Enterobacteriaceae (CPE) in NH residents. Risk factors for MDRO carriage were also explored. Methods Up to 51 randomly selected residents per NH were screened for MDRO carriage by trained local nurses between June and October 2015. Rectal swabs were cultured for ESBLE, CPE and VRE, while pooled samples of nose, throat and perineum and chronic wound swabs were obtained for culture of MRSA. Antimicrobial susceptibility testing, molecular detection of resistance genes and strain genotyping were performed. Significant risk factors for MDRO colonization MDRO was determined by univariate and multivariable analysis. Results Overall, 1447 residents from 29 NHs were enrolled. The mean weighted prevalence of ESBLE and MRSA colonization was 11.3% and 9.0%, respectively. Co-colonization occurred in 1.8% of the residents. VRE and CPE carriage were identified in only one resident each. Impaired mobility and recent treatment with fluoroquinolones or with combinations of sulphonamides and trimethoprim were identified as risk factors for ESBLE carriage, while for MRSA these were previous MRSA carriage/infection, a stay in several different hospital wards during the past year, and a recent treatment with nitrofuran derivatives. Current antacid use was a predictor for both ESBL and MRSA carriage. Conclusions In line with the evolution of MRSA and ESBL colonization/infection in hospitals, a decline in MRSA carriage and an increase in ESBLE prevalence was seen in Belgian NHs between 2005 and 2015. These results show that a systemic approach, includi, SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2019
31. Molecular characterization of OXA-198 carbapenemase producing clinical isolates
- Author
-
Bonnin, Rémy A, Bogaerts, Pierre, Girlich, Delphine, Huang, Te-Din, Dortet, Laurent, Glupczynski, Gerald, Naas, Thierry, UCL - SSS/IREC/MONT - Pôle Mont Godinne, and UCL - (MGD) Laboratoire de biologie clinique
- Subjects
Carbapenemase ,IncP-11 ,bacteria ,Outbreak ,biochemical phenomena, metabolism, and nutrition ,Plasmid ,Integron - Abstract
Carbapenemase-producing have increasingly been reported worldwide, with an ever-increasing heterogeneity of carbapenem resistance mechanisms depending on the bacterial species and its geographical location. OXA-198 is a plasmid-encoded class D β-lactamase involved in carbapenem-resistance in one isolate from Belgium. In the setting of a multicentre survey of carbapenem-resistance in in Belgian hospitals in 2013, three additional OXA-198 producing originating from patients hospitalized at one hospital were detected. To reveal the molecular mechanism underlying the reduced susceptibility to carbapenems, MICs, whole genome sequencing (WGS) and PCR reactions to confirm the genetic organization were performed. The plasmid harboring gene was characterized alongside with the genetic relatedness of the four isolates. The gene was harbored on a class 1 integron carried itself by a ca. 49-kb IncP-type plasmid proposed as IncP11. The same plasmid was present in all four isolates. MLST typing revealed that they all belonged to ST-446 and SNP analysis revealed only a few differences between these isolates. This report describes the structure of a 49-kb plasmid harbouring the gene and the first description of OXA-198 producing isolates associated with a hospital-associated cluster episode.
- Published
- 2018
32. Increasing proportion of carbapenemase-producing Enterobacteriaceae and emergence of a MCR-1 producer through a multicentric study among hospital-based and private laboratories in Belgium from September to November 2015
- Author
-
Huang, Te Din, Bogaerts, Pierre, Berhin, Catherine, Hoebeke, Martin, Bauraing, Caroline, Glupczynski, Youri, multicentre study group, on behalf of a, Boelens, Jerina, Claeys, Geert, Immunology and Microbiology, Microbiology and Infection Control, Supporting clinical sciences, Faculty of Medicine and Pharmacy, Experimental Pharmacology, UCL - (MGD) Laboratoire de biologie clinique, and UCL - SSS/IREC/MONT - Pôle Mont Godinne
- Subjects
0301 basic medicine ,Carbapenem ,Carbapenemase-Producing Enterobacteriaceae ,Pediatrics ,Epidemiology ,Klebsiella pneumoniae ,SUSCEPTIBILITY ,Surveillance and Outbreak Report ,Colistin resistance ,beta-lactamases ,0302 clinical medicine ,Belgium ,Medicine and Health Sciences ,030212 general & internal medicine ,biology ,Escherichia coli Proteins ,Enterobacteriaceae Infections ,Hospital based ,Enterobacteriaceae ,Hospitals ,PREVALENCE ,Anti-Bacterial Agents ,COMMUNITY ,Multicenter Study ,colistin resistance ,TRAVEL ,ESCHERICHIA-COLI ,community ,Female ,KLEBSIELLA-PNEUMONIAE ,SPREAD ,medicine.drug ,medicine.medical_specialty ,030106 microbiology ,carbapenem resistance ,Microbial Sensitivity Tests ,03 medical and health sciences ,Bacterial Proteins ,Virology ,Internal medicine ,Drug Resistance, Bacterial ,medicine ,Journal Article ,Humans ,LACTAMASE ,business.industry ,ACQUISITION ,Public Health, Environmental and Occupational Health ,Biology and Life Sciences ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Cross-Sectional Studies ,Carbapenems ,MCR-1 ,business ,RESISTANCE - Abstract
Carbapenemase-producing Enterobacteriaceae (CPE) strains have been increasingly reported in Belgium. We aimed to determine the proportion of CPE among Enterobacteriaceae isolated from hospitalised patients and community outpatients in Belgium in 2015. For the hospitalised patients, the results were compared to a previous similar survey performed in the same hospitals in 2012. Twenty-four hospital-based and 10 private laboratories collected prospectively 200 non-duplicated Enterobacteriaceae isolates from clinical specimens. All isolates were screened locally by carbapenem disk diffusion using European Committee on Antimicrobial Susceptibility Testing methodology. Putative CPE strains with inhibition zone diameters below the screening breakpoints were referred centrally for confirmation of carbapenemase production. From September to November 2015, we found a proportion of clinical CPE of 0.55% (26/4,705) and of 0.60% (12/1,991) among hospitalised patients and among ambulatory outpatients respectively. Klebsiella pneumoniae (26/38) and OXA-48-like carbapenemase (28/38) were the predominant species and enzyme among CPE. One OXA-48-producing Escherichia coli isolated from a hospital was found carrying plasmid-mediated MCR-1 colistin resistance. Compared with the 2012 survey, we found a significant increased proportion of clinical CPE (0.55% in 2015 vs 0.25% in 2012; p = 0.02) and an increased proportion of hospitals (13/24 in 2015 vs 8/24 in 2012) with at least one CPE detected. The study results confirmed the concerning spread of CPE including a colistin-resistant MCR-1 producer in hospitals and the establishment of CPE in the community in Belgium.
- Published
- 2017
- Full Text
- View/download PDF
33. Prevalence of multidrug-resistant organisms in nursing homes in Belgium in 2015
- Author
-
Latour, Katrien, primary, Huang, Te-Din, additional, Jans, Béatrice, additional, Berhin, Catherine, additional, Bogaerts, Pierre, additional, Noel, Audrey, additional, Nonhoff, Claire, additional, Dodémont, Magali, additional, Denis, Olivier, additional, Ieven, Margareta, additional, Loens, Katherine, additional, Schoevaerdts, Didier, additional, Catry, Boudewijn, additional, and Glupczynski, Youri, additional
- Published
- 2019
- Full Text
- View/download PDF
34. Evaluation of the ePlex Blood Culture Identification Panels for Detection of Pathogens in Bloodstream Infections
- Author
-
Huang, Te-Din, primary, Melnik, Ekaterina, additional, Bogaerts, Pierre, additional, Evrard, Stephanie, additional, and Glupczynski, Youri, additional
- Published
- 2019
- Full Text
- View/download PDF
35. Molecular Characterization of OXA-198 Carbapenemase-Producing Pseudomonas aeruginosa Clinical Isolates
- Author
-
Bonnin, Rémy A., primary, Bogaerts, Pierre, additional, Girlich, Delphine, additional, Huang, Te-Din, additional, Dortet, Laurent, additional, Glupczynski, Youri, additional, and Naas, Thierry, additional
- Published
- 2018
- Full Text
- View/download PDF
36. Prospective evaluation of a high multiplexing real-time polymerase chain reaction array for the rapid identification and characterization of bacteria causative of nosocomial pneumonia from clinical specimens: a proof-of-concept study
- Author
-
Roisin, Sandrine, Huang, Te Din, De Mendonça, Ricardo, Nonhoff, Claire, Bogaerts, Pierre, Hites, Maya, Delaere, Bénédicte, Hamels, Sandrine, de Longueville, Françoise, Glupczynski, Youri, Denis, Olivier, Roisin, Sandrine, Huang, Te Din, De Mendonça, Ricardo, Nonhoff, Claire, Bogaerts, Pierre, Hites, Maya, Delaere, Bénédicte, Hamels, Sandrine, de Longueville, Françoise, Glupczynski, Youri, and Denis, Olivier
- Abstract
The purpose of this study was evaluation of the VAPChip assay based on the “Rapid-Array-PCR-technology” which targets 13 respiratory pathogens and 24 β-lactam resistance genes directly on respiratory clinical specimens. The first step included analysis of 45 respiratory specimens in order to calibrate and determine the threshold for target genes. The second prospective step involved 85 respiratory samples from patients suspected of nosocomial pneumonia collected in two academic hospitals over an 8-month period. Results of the VAPChip assay were compared to routine methods. The first step showed a large proportion of positive signals for H. influenzae and/or S. pneumoniae. For identification, discrepancies were observed in seven samples. Thresholds were adapted and two probes were re-designed to create a new version of the cartridge. In the second phase, sensitivity and specificity of the VAPchip for bacterial identification were 72.9% and 99.1%, respectively. Seventy (82%) pathogens were correctly identified by both methods. Nine pathogens detected by the VAPChip were culture negative and 26 pathogens identified by culture were VAPChip negative. For resistance mechanisms, 11 probes were positive without identification of pathogens with an antimicrobial-susceptibility testing compatible by culture. However, the patient’s recent microbiological history was able to explain most of these positive signals. The VAPChip assay simultaneously detects different pathogens and resistance mechanisms directly from clinical samples. This system seems very promising but the extraction process needs to be automated for routine implementation. This kind of rapid point-of-care automated platform permitting a syndromic approach will be the future challenge in the management of infectious diseases., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2018
37. An outpatient clinic as a potential site of transmission for an outbreak of NDM-producing Klebsiella pneumoniae ST716: a study using whole-genome sequencing.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Heinrichs, Amélie, Argudín, Maria Angeles, De Mendonça, Ricardo, Deplano, Ariane, Roisin, Sandrine, Dodémont, Magali, Coussement, Julien, Filippin, Lorenzo, Dombrecht, Jill, De Bruyne, Katrien, Huang, Te-Din, Supply, Philip, Byl, Baudouin, Glupczynski, Gerald, Denis, Olivier, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Heinrichs, Amélie, Argudín, Maria Angeles, De Mendonça, Ricardo, Deplano, Ariane, Roisin, Sandrine, Dodémont, Magali, Coussement, Julien, Filippin, Lorenzo, Dombrecht, Jill, De Bruyne, Katrien, Huang, Te-Din, Supply, Philip, Byl, Baudouin, Glupczynski, Gerald, and Denis, Olivier
- Abstract
The incidence of nosocomial infections due to carbapenem-resistant Klebsiella pneumoniae is increasing worldwide. Whole genome sequencing (WGS) can help elucidate the transmission route of nosocomial pathogens. We combined WGS and epidemiological data to analyze an outbreak of NDM-producing K. pneumoniae that occurred in two Belgian hospitals situated about 50 miles apart. We characterized 74 NDM-producing K. pneumoniae isolates [Hospital A (n=9); Hospital B (n=24) and 41 contemporary isolates from 15 other Belgian hospitals] using pulsed-field gel electrophoresis and WGS. A K. pneumoniae ST716 clone was identified as being responsible for the outbreak with 9/9 strains from Hospital A and 20/24 strains from Hospital B sharing a unique pulsotype and being clustered together on WGS (compared with 1/41 isolates from other Belgian hospitals). We identified the outpatient clinic of Hospital B as the probable bridging site between the hospitals after combining epidemiological, phylogenetic and resistome data. We also identified the patient who probably caused the transmission. In fact, all but one strain from Hospital A carried a Tn1331-like transposon, whereas none of the Hospital B isolates did. The patient from Hospital A who did not have the Tn1331-like transposon was treated at the outpatient clinic of Hospital B on the same day as the first NDM-producing K. pneumoniae positive patient from Hospital B. The results from our WGS-guided investigation highlight the importance of implementing adequate infection control measures in outpatient settings, especially when healthcare delivery moves from acute care facilities to outpatient clinics.
- Published
- 2018
38. Prevalence and mechanisms of resistance to carbapenems in Enterobacteriaceae isolates from 24 hospitals in Belgium
- Author
-
Huang, Te Din, Berhin, Catherine, Bogaerts, Pierre, Glupczynski, Youri, Caddrobi, J., Leroux, I., Claeys, Geert, Oris, Els, Coppens, Guy, Dediste, Anne, Vandenberg, Olivier, DeGheldre, Yves, Nonhoff, Claire, Denis, Olivier, Smismans, Annick, Garrino, Maria Grazia, Goffinet, Jean Sebastien, Huang, Te-Din, Ieven, Margareta, Lissoir, Bénédicte, Magerman, Koen, Dodemont, Magali, Melin, Pierrette, Miendjé Deyi, Véronique Yvette, Nulens, Eric, Schallier, Anneleen, Pierard, Denis, Pernet, A., Potvliege, Catherine, Rodriguez Villalobos, Hector, Simon, H., Carpentier, M., Senterre, Jean Marc, Van Vaerenbergh, Kristien, Boel, An, Vandenabeele, A. M., Verbelen, V., Saegeman, Veroniek S M V., Jan Verhaegen, V., Huang, Te Din, Berhin, Catherine, Bogaerts, Pierre, Glupczynski, Youri, Caddrobi, J., Leroux, I., Claeys, Geert, Oris, Els, Coppens, Guy, Dediste, Anne, Vandenberg, Olivier, DeGheldre, Yves, Nonhoff, Claire, Denis, Olivier, Smismans, Annick, Garrino, Maria Grazia, Goffinet, Jean Sebastien, Huang, Te-Din, Ieven, Margareta, Lissoir, Bénédicte, Magerman, Koen, Dodemont, Magali, Melin, Pierrette, Miendjé Deyi, Véronique Yvette, Nulens, Eric, Schallier, Anneleen, Pierard, Denis, Pernet, A., Potvliege, Catherine, Rodriguez Villalobos, Hector, Simon, H., Carpentier, M., Senterre, Jean Marc, Van Vaerenbergh, Kristien, Boel, An, Vandenabeele, A. M., Verbelen, V., Saegeman, Veroniek S M V., and Jan Verhaegen, V.
- Abstract
Objectives: To determine the point prevalence of carbapenem-non-susceptible Enterobacteriaceae (CNSE) and carbapenemase-producing Enterobacteriaceae (CPE) isolates among hospitalized patients in Belgium. Methods: Twenty-four hospital-based laboratories prospectively collected 200 non-duplicated Enterobacteria-ceae isolates from clinical specimens of hospitalized patients over a 2 month period. All isolates were screened locally for decreased susceptibility to carbapenem drugs using a disc diffusion method according to CLSI interpretative criteria. CNSE strains were referred centrally for confirmation of carbapenemase by phenotypic and molecular testing. Results: From February to April 2012, 158 of the 4564 screened Enterobacteriaceae isolates were categorized as non-susceptible to carbapenems, resulting in a point prevalence of CNSE of 3.5% (95% CI: 2.9%-4.2%; range per centre: 0.5%-8.5%). Of the 125 referred CNSE isolates, 11 Klebsiella pneumoniae isolates [OXA-48 (n1/47), KPC type (n1/43) and NDM type (n1/41)], 1 OXA-48-positive Escherichia coli isolate and 1 KPC-positive Kleb-siella oxytoca isolate were detected in eight hospitals. None of the 72 carbapenem-non-susceptible Enterobac-ter spp. isolates were confirmed as CPE. The minimal estimated point prevalence of CPE isolates was 0.28% (13/ 4564; 95% CI: 0.13%-0.44%) overall (range per centre: 0%-1.5%). Conclusions: Despite the overall low prevalence of CNSE found in this study, the detection of CPE isolates in one-third of the participating centres raises concerns and highly suggests the spread and establishment of CPE in Belgian hospitals. © The Author 2013. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2013
39. Multicentre evaluation of the BYG Carba v2.0 test, a simplified electrochemical assay for the rapid laboratory detection of carbapenemase-producing Enterobacteriaceae
- Author
-
Bogaerts, Pierre, primary, Oueslati, Saoussen, additional, Meunier, Danièle, additional, Nonhoff, Claire, additional, Yunus, Sami, additional, Massart, Marion, additional, Denis, Olivier, additional, Woodford, Neil, additional, Hopkins, Katie L., additional, Naas, Thierry, additional, Dortet, Laurent, additional, Huang, Te-Din, additional, and Glupczynski, Youri, additional
- Published
- 2017
- Full Text
- View/download PDF
40. Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective, multinational study
- Author
-
Grundmann, Hajo Glasner, Corinna Albiger, Barbara Aanensen, David M. Tomlinson, Chris T. Tambic Andrasevic, Arjana and Canton, Rafael Carmeli, Yehuda Friedrich, Alexander W. and Giske, Christian G. Glupczynski, Youri Gniadkowski, Marek and Livermore, David M. Nordmann, Patrice Poirel, Laurent and Rossolini, Gian M. Seifert, Harald Vatopoulos, Alkiviadis and Walsh, Timothy Woodford, Neil Monnet, Dominique L. Apfalter, Petra Hartl, Rainer Glupczynski, Youri Huang, Te-Din and Strateva, Tanya Marteva-Proevska, Yuliya Andrasevic, Arjana Tambic Butic, Iva Pieridou-Bagatzouni, Despo and Maikanti-Charalampous, Panagiota Hrabak, Jaroslav Zemlickova, Helena Hammerum, Anette Jakobsen, Lotte Ivanova, Marina and Pavelkovich, Anastasia Jalava, Jari Osterblad, Monica Vaux, Sophie Dortet, Laurent Kaase, Martin Gatermann, Soeren G. and Vatopoulos, Alkiviadis Tryfinopoulou, Kyriaki Toth, Akos and Janvari, Laura Boo, Teck Wee McGrath, Elaine Pantosti, Annalisa Monaco, Monica Balode, Arta Saule, Mara and Miciuleviciene, Jolanta Mierauskaite, Aiste Perrin-Weniger, Monique Reichert, Paul Nestorova, Nina Debattista, Sonia and Zabicka, Dorota Literacka, Elzbieta Canica, Manuela and Manageiro, Vera Damian, Maria Lixandru, Brandusa Niks, Milan and Schreterova, Eva Pirs, Mateja Cerar, Tjasa Oteo, Jesus and Aracil, Belen Giske, Christian G. Sjostrom, Karin and Woodford, Neil Hopkins, Katie Wiuff, Camilla Brown, Derek J. and Hardarson, Hordur Samuelsen, Orjan Haldorsen, Bjorg and Koraqi, Andi Lacej, Denada Raka, Lul Kurti, Arsim and Mijovic, Gordana Lopicic, Milena Jelesic, Zora Trudic, Anika and Kraftandzieva, Ana Trajkovska-Dokic, Elena Gur, Deniz and Cakar, Asli Carmeli, Yehuda Adler, Amos European Survey Carbapenemase-Prod and Grundmann, Hajo Glasner, Corinna Albiger, Barbara Aanensen, David M. Tomlinson, Chris T. Tambic Andrasevic, Arjana and Canton, Rafael Carmeli, Yehuda Friedrich, Alexander W. and Giske, Christian G. Glupczynski, Youri Gniadkowski, Marek and Livermore, David M. Nordmann, Patrice Poirel, Laurent and Rossolini, Gian M. Seifert, Harald Vatopoulos, Alkiviadis and Walsh, Timothy Woodford, Neil Monnet, Dominique L. Apfalter, Petra Hartl, Rainer Glupczynski, Youri Huang, Te-Din and Strateva, Tanya Marteva-Proevska, Yuliya Andrasevic, Arjana Tambic Butic, Iva Pieridou-Bagatzouni, Despo and Maikanti-Charalampous, Panagiota Hrabak, Jaroslav Zemlickova, Helena Hammerum, Anette Jakobsen, Lotte Ivanova, Marina and Pavelkovich, Anastasia Jalava, Jari Osterblad, Monica Vaux, Sophie Dortet, Laurent Kaase, Martin Gatermann, Soeren G. and Vatopoulos, Alkiviadis Tryfinopoulou, Kyriaki Toth, Akos and Janvari, Laura Boo, Teck Wee McGrath, Elaine Pantosti, Annalisa Monaco, Monica Balode, Arta Saule, Mara and Miciuleviciene, Jolanta Mierauskaite, Aiste Perrin-Weniger, Monique Reichert, Paul Nestorova, Nina Debattista, Sonia and Zabicka, Dorota Literacka, Elzbieta Canica, Manuela and Manageiro, Vera Damian, Maria Lixandru, Brandusa Niks, Milan and Schreterova, Eva Pirs, Mateja Cerar, Tjasa Oteo, Jesus and Aracil, Belen Giske, Christian G. Sjostrom, Karin and Woodford, Neil Hopkins, Katie Wiuff, Camilla Brown, Derek J. and Hardarson, Hordur Samuelsen, Orjan Haldorsen, Bjorg and Koraqi, Andi Lacej, Denada Raka, Lul Kurti, Arsim and Mijovic, Gordana Lopicic, Milena Jelesic, Zora Trudic, Anika and Kraftandzieva, Ana Trajkovska-Dokic, Elena Gur, Deniz and Cakar, Asli Carmeli, Yehuda Adler, Amos European Survey Carbapenemase-Prod
- Abstract
Background Gaps in the diagnostic capacity and heterogeneity of national surveillance and reporting standards in Europe make it difficult to contain carbapenemase-producing Enterobacteriaceae. We report the development of a consistent sampling framework and the results of the first structured survey on the occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in European hospitals. Methods National expert laboratories recruited hospitals with diagnostic capacities, who collected the first ten carbapenem non-susceptible clinical isolates of K pneumoniae or E coli and ten susceptible same-species comparator isolates and pertinent patient and hospital information. Isolates and data were relayed back to national expert laboratories, which made laboratory-substantiated information available for central analysis. Findings Between Nov 1, 2013, and April 30, 2014, 455 sentinel hospitals in 36 countries submitted 2703 clinical isolates (2301 [85%] Kpneurnoniae and 402 (15%) Ecoli). 850 (37%) of 2301 Kpneumoniae samples and 77 (19%) of 402 Ecoli samples were carbapenemase (KPC, NDM, OXA-48-like, or VIM) producers. The ratio of K pneumoniae to E coli was 11:1.1.3 patients per 10000 hospital admissions had positive clinical specimens. Prevalence differed greatly, with the highest rates in Mediterranean and Balkan countries. Carbapenemase-producing K pneumoniae isolates showed high resistance to last-line antibiotics. Interpretation This initiative shows an encouraging commitment by all participants, and suggests that challenges in the establishment of a continent-wide enhanced sentinel surveillance for carbapenemase-producing Entero-bacteriaeceae can be overcome. Strengthening infection control efforts in hospitals is crucial for controlling spread through local and national health care networks.
- Published
- 2017
41. Increasing incidence of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in Belgian hospitals.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, De Laveleye, Morgane, Huang, Te-Din, Bogaerts, Pierre, Berhin, Catherine, Bauraing, Caroline, Sacré, Pierre, Noel, Audrey, Glupczynski, Gerald, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, De Laveleye, Morgane, Huang, Te-Din, Bogaerts, Pierre, Berhin, Catherine, Bauraing, Caroline, Sacré, Pierre, Noel, Audrey, and Glupczynski, Gerald
- Abstract
Carbapenemase-producing Enterobacteriaceae are increasingly reported worldwide. The aim of the study was to determine the incidence and molecular epidemiology of carbapenemase-producing (CP) Escherichia coli and Klebsiella pneumoniae (CP-E/K) in Belgium. Eleven hospital-based laboratories collected carbapenem non-susceptible (CNS) isolates of E. coli and K. pneumoniae detected in clinical specimens from January 2013 to December 2014. All CNS strains were tested for carbapenemase production and typed by multilocus sequence typing (MLST) for a 6-month period as part of the European Survey on Carbapenemase-Producing Enterobacteriaceae in Europe (EuSCAPE) structured survey. In addition, an equal number of carbapenem-susceptible isolates collected were preserved as a control group for risk factor analysis. The overall incidence rate of CP-E/K isolates in hospitals increased from 0.124 in 2013 to 0.223 per 1000 admissions in 2014. From November 2013 to April 2014, 30 CP K. pneumoniae [OXA-48 (n = 16), KPC (n = 13), OXA-427 (n = 1)] and five CP E. coli [OXA-48 (n = 3), NDM (n = 1), OXA-427 (n = 1)] isolates were detected in ten hospitals. The 16 OXA-48-producing K. pneumoniae strains were distributed into eight sequence types (STs), while the 13 KPC-producing K. pneumoniae clustered into three STs dominated by ST512 (n = 7) and ST101 (n = 5). Compared to controls, we observed among CP-E/K carriers significantly higher proportion of males, respiratory origins, previous hospitalization, nosocomial setting, and a significantly lower proportion of bloodstream infections. Our study confirms the rapid spread of CP-E/K in Belgian hospitals and the urgent need for a well-structured and coordinated national surveillance plan in order to limit their dissemination.
- Published
- 2017
42. Chromosomal amplification of the blaOXA-58 carbapenemase gene in a Proteus mirabilis clinical isolate.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Girlich, Delphine, Bonnin, Rémy A, Bogaerts, Pierre, De Laveleye, Morgane, Huang, Te-Din, Dortet, Laurent, Glaser, Philippe, Glupczynski, Gerald, Naas, Thierry, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, Girlich, Delphine, Bonnin, Rémy A, Bogaerts, Pierre, De Laveleye, Morgane, Huang, Te-Din, Dortet, Laurent, Glaser, Philippe, Glupczynski, Gerald, and Naas, Thierry
- Abstract
Horizontal gene transfer may occur between distantly related bacteria thus leading to genetic plasticity and in some cases to acquisition of novel resistance traits. Proteus mirabilis is an Enterobacterial species responsible for human infections that may express various acquired ß-lactam resistance genes, including different classes of carbapenemase genes. Here we report a Proteus mirabilis clinical isolate (1091) displaying resistance to penicillin, including temocillin, together with reduced susceptibility to carbapenems and susceptibility to expanded-spectrum cephalosporins. Using biochemical tests, significant carbapenem hydrolysis could be detected in P. mirabilis 1091. Since PCR failed to detect acquired carbapenemase genes commonly found in Enterobactericeae we used a whole genome sequencing approach that revealed the presence of blaOXA-58 class D carbapenemase gene, so far only identified in Acinetobacter sp.. This gene was located on a 3.1-kb element co-harboring a blaAmpC-like gene. Remarkably these two genes were bracketed by putative XerC-XerD binding sites and inserted at a XerC-XerD site located between the terminase-like small and large subunit genes of a bacteriophage. Increased expression of the two bla genes resulted from a 6-time tandem amplification of the element as revealed by Southern blotting. This is the first isolation of a clinical P. mirabilis strain producing OXA-58, a class D carbapenemase and the first description of a XerC-XerD dependent insertion of antibiotic resistance genes within a bacteriophage. This study revealed a new role for the XerC-XerD recombinase in bacteriophage biology.
- Published
- 2017
43. Clinical case of cfr-positive MRSA CC398 in Belgium.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Pathologie infectieuse, Paridaens, Henri, Coussement, Julien, Argudín, María Ángeles, Delaere, Bénédicte, Huang, Te-Din, Glupczynski, Gerald, Denis, Olivier, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - (MGD) Pathologie infectieuse, Paridaens, Henri, Coussement, Julien, Argudín, María Ángeles, Delaere, Bénédicte, Huang, Te-Din, Glupczynski, Gerald, and Denis, Olivier
- Published
- 2017
44. Increasing proportion of carbapenemase-producing Enterobacteriaceae and emergence of a MCR-1 producer through a multicentric study among hospital-based and private laboratories in Belgium from September to November 2015.
- Author
-
UCL - (MGD) Laboratoire de biologie clinique, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Huang, Te-Din, Bogaerts, Pierre, Berhin, Catherine, Hoebeke, Martin, Bauraing, Caroline, Glupczynski, Gerald, a multicentre study group, Rodriguez-Villalobos, Hector, Simon, Anne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale, UCL - (SLuc) Service de microbiologie, Huang, Te-Din, Bogaerts, Pierre, Berhin, Catherine, Hoebeke, Martin, Bauraing, Caroline, Glupczynski, Gerald, a multicentre study group, Rodriguez-Villalobos, Hector, and Simon, Anne
- Abstract
Carbapenemase-producing Enterobacteriaceae (CPE) strains have been increasingly reported in Belgium. We aimed to determine the proportion of CPE among Enterobacteriaceae isolated from hospitalised patients and community outpatients in Belgium in 2015. For the hospitalised patients, the results were compared to a previous similar survey performed in the same hospitals in 2012. Twenty-four hospital-based and 10 private laboratories collected prospectively 200 non-duplicated Enterobacteriaceae isolates from clinical specimens. All isolates were screened locally by carbapenem disk diffusion using European Committee on Antimicrobial Susceptibility Testing methodology. Putative CPE strains with inhibition zone diameters below the screening breakpoints were referred centrally for confirmation of carbapenemase production. From September to November 2015, we found a proportion of clinical CPE of 0.55% (26/4,705) and of 0.60% (12/1,991) among hospitalised patients and among ambulatory outpatients respectively. Klebsiella pneumoniae (26/38) and OXA-48-like carbapenemase (28/38) were the predominant species and enzyme among CPE. One OXA-48-producing Escherichia coli isolated from a hospital was found carrying plasmid-mediated MCR-1 colistin resistance. Compared with the 2012 survey, we found a significant increased proportion of clinical CPE (0.55% in 2015 vs 0.25% in 2012; p = 0.02) and an increased proportion of hospitals (13/24 in 2015 vs 8/24 in 2012) with at least one CPE detected. The study results confirmed the concerning spread of CPE including a colistin-resistant MCR-1 producer in hospitals and the establishment of CPE in the community in Belgium.
- Published
- 2017
45. Multicentre evaluation of the BYG Carba v2.0 test, a simplified electrochemical assay for the rapid laboratory detection of carbapenemase-producing Enterobacteriaceae.
- Author
-
UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SST/IMCN/BSMA - Bio and soft matter, Bogaerts, Pierre, Oueslati, Saoussen, Meunier, Danièle, Nonhoff, Claire, Yunus, Sami, Massart, Marion, Denis, Olivier, Woodford, Neil, Hopkins, Katie L, Naas, Thierry, Dortet, Laurent, Huang, Te-Din, Glupczynski, Gerald, UCL - SSS/IREC/MONT - Pôle Mont Godinne, UCL - (MGD) Laboratoire de biologie clinique, UCL - SST/IMCN/BSMA - Bio and soft matter, Bogaerts, Pierre, Oueslati, Saoussen, Meunier, Danièle, Nonhoff, Claire, Yunus, Sami, Massart, Marion, Denis, Olivier, Woodford, Neil, Hopkins, Katie L, Naas, Thierry, Dortet, Laurent, Huang, Te-Din, and Glupczynski, Gerald
- Abstract
Rapid detection of carbapenemase-producing Enterobacteriaceae (CPE) represents a major challenge for microbiology laboratories. We evaluated the BYG Carba v2.0 using a simplified protocol, which detects CPE in less than 30 minutes. This new procedure reduces the hands-on-time from 5 to one minute and only requires a limited amount of material (one to three colonies) thereby preventing the need for subculturing bacterial isolates to reach a larger amount of pure biomass. This multicentre study involved four European reference laboratories. For the 1181 isolates tested across four centres, BYG Carba v2.0 yielded overall sensitivity and specificity of 96.3% (CI95: 94.5-97.5) and 99.7% (CI95: 98.6-100) respectively. Considering only the 670 consecutive isolates tested prospectively, the BYG Carba v2.0 displayed overall positive and negative predictive values of 99.7% (CI95: 95.4-98.9) and 97.5% (CI95: 94.9-98.8). Regarding time to positivity, 85% of CPE detected were positive within ten minutes. The BYG Carba v2.0 is a new highly simplified, rapid and accurate electrochemical assay discriminating between CPE and non-CPE in less than 30 min. The real-time quantified signal allows objective and traceable interpretation of the results.
- Published
- 2017
46. Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective, multinational study
- Author
-
Grundmann, Hajo, Glasner, Corinna, Albiger, Barbara, Aanensen, David M., Tomlinson, Chris T., Andrasevic, Arjana Tambic, Canton, Rafael, Carmeli, Yehuda, Friedrich, Alexander W., Giske, Christian G., Glupczynski, Youri, Gniadkowski, Marek, Livermore, David M., Nordmann, Patrice, Poirel, Laurent, Rossolini, Gian M., Seifert, Harald, Vatopoulos, Alkiviadis, Walsh, Timothy, Woodford, Neil, Monnet, Dominique L., Apfalter, Petra, Hartl, Rainer, Huang, Te-Din, Strateva, Tanya, Marteva-Proevska, Yuliya, Butic, Iva, Pieridou-Bagatzouni, Despo, Maikanti-Charalampous, Panagiota, Hrabak, Jaroslav, Zemlickova, Helena, Hammerum, Anette, Jakobsen, Lotte, Ivanova, Marina, Pavelkovich, Anastasia, Jalava, Jari, Osterblad, Monica, Vaux, Sophie, Dortet, Laurent, Kaase, Martin, Gatermann, Soeren G, Tryfinopoulou, Kyriaki, Toth, Akos, Janvari, Laura, Boo, Teck Wee, McGrath, Elaine, Pantosti, Annalisa, Monaco, Monica, Balode, Arta, Saule, Mara, Miciuleviciene, Jolanta, Mierauskaite, Aiste, Perrin-Weniger, Monique, Reichert, Paul, Nestorova, Nina, Debattista, Sonia, Zabicka, Dorota, Literacka, Elzbieta, Canica, Manuela, Manageiro, Vera, Damian, Maria, Lixandru, Brandusa, Niks, Milan, Schreterova, Eva, Pirs, Mateja, Cerar, Tjasa, Oteo, Jesus, Aracil, Belen, Sjostrom, Karin, Hopkins, Katie, Wiuff, Camilla, Brown, Derek J., Hardarson, Hordur, Samuelsen, Orjan, Haldorsen, Bjorg, Koraqi, Andi, Lacej, Denada, Raka, Lul, Kurti, Arsim, Mijovic, Gordana, Lopicic, Milena, Jelesic, Zora, Trudic, Anika, Kraftandzieva, Ana, Trajkovska-Dokic, Elena, Gur, Deniz, Cakar, Asli, Adler, Amos, Grundmann, Hajo, Glasner, Corinna, Albiger, Barbara, Aanensen, David M., Tomlinson, Chris T., Andrasevic, Arjana Tambic, Canton, Rafael, Carmeli, Yehuda, Friedrich, Alexander W., Giske, Christian G., Glupczynski, Youri, Gniadkowski, Marek, Livermore, David M., Nordmann, Patrice, Poirel, Laurent, Rossolini, Gian M., Seifert, Harald, Vatopoulos, Alkiviadis, Walsh, Timothy, Woodford, Neil, Monnet, Dominique L., Apfalter, Petra, Hartl, Rainer, Huang, Te-Din, Strateva, Tanya, Marteva-Proevska, Yuliya, Butic, Iva, Pieridou-Bagatzouni, Despo, Maikanti-Charalampous, Panagiota, Hrabak, Jaroslav, Zemlickova, Helena, Hammerum, Anette, Jakobsen, Lotte, Ivanova, Marina, Pavelkovich, Anastasia, Jalava, Jari, Osterblad, Monica, Vaux, Sophie, Dortet, Laurent, Kaase, Martin, Gatermann, Soeren G, Tryfinopoulou, Kyriaki, Toth, Akos, Janvari, Laura, Boo, Teck Wee, McGrath, Elaine, Pantosti, Annalisa, Monaco, Monica, Balode, Arta, Saule, Mara, Miciuleviciene, Jolanta, Mierauskaite, Aiste, Perrin-Weniger, Monique, Reichert, Paul, Nestorova, Nina, Debattista, Sonia, Zabicka, Dorota, Literacka, Elzbieta, Canica, Manuela, Manageiro, Vera, Damian, Maria, Lixandru, Brandusa, Niks, Milan, Schreterova, Eva, Pirs, Mateja, Cerar, Tjasa, Oteo, Jesus, Aracil, Belen, Sjostrom, Karin, Hopkins, Katie, Wiuff, Camilla, Brown, Derek J., Hardarson, Hordur, Samuelsen, Orjan, Haldorsen, Bjorg, Koraqi, Andi, Lacej, Denada, Raka, Lul, Kurti, Arsim, Mijovic, Gordana, Lopicic, Milena, Jelesic, Zora, Trudic, Anika, Kraftandzieva, Ana, Trajkovska-Dokic, Elena, Gur, Deniz, Cakar, Asli, and Adler, Amos
- Abstract
Background Gaps in the diagnostic capacity and heterogeneity of national surveillance and reporting standards in Europe make it difficult to contain carbapenemase-producing Enterobacteriaceae. We report the development of a consistent sampling framework and the results of the first structured survey on the occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in European hospitals. Methods National expert laboratories recruited hospitals with diagnostic capacities, who collected the first ten carbapenem non-susceptible clinical isolates of K pneumoniae or E coli and ten susceptible same-species comparator isolates and pertinent patient and hospital information. Isolates and data were relayed back to national expert laboratories, which made laboratory-substantiated information available for central analysis. Findings Between Nov 1, 2013, and April 30, 2014, 455 sentinel hospitals in 36 countries submitted 2703 clinical isolates (2301 [85%] Kpneurnoniae and 402 (15%) Ecoli). 850 (37%) of 2301 Kpneumoniae samples and 77 (19%) of 402 Ecoli samples were carbapenemase (KPC, NDM, OXA-48-like, or VIM) producers. The ratio of K pneumoniae to E coli was 11:1.1.3 patients per 10000 hospital admissions had positive clinical specimens. Prevalence differed greatly, with the highest rates in Mediterranean and Balkan countries. Carbapenemase-producing K pneumoniae isolates showed high resistance to last-line antibiotics. Interpretation This initiative shows an encouraging commitment by all participants, and suggests that challenges in the establishment of a continent-wide enhanced sentinel surveillance for carbapenemase-producing Entero-bacteriaeceae can be overcome. Strengthening infection control efforts in hospitals is crucial for controlling spread through local and national health care networks.
- Published
- 2017
47. Temocillin and piperacillin/tazobactam resistance by disc diffusion as antimicrobial surrogate markers for the detection of carbapenemase-producing Enterobacteriaceae in geographical areas with a high prevalence of OXA-48 producers
- Author
-
Huang, Te-Din, Poirel, Laurent, Bogaerts, Pierre, Berhin, Catherine, Nordmann, Patrice, Glupczynski, Youri, Huang, Te-Din, Poirel, Laurent, Bogaerts, Pierre, Berhin, Catherine, Nordmann, Patrice, and Glupczynski, Youri
- Abstract
Objectives To assess the performance of the agar disc diffusion method for the detection of carbapenemase-producing Enterobacteriaceae (CPE) referred to the national reference laboratories (NRLs) in Belgium and France. Methods All Enterobacteriaceae isolates referred to the NRLs for the confirmation of CPE in 2012 were included. The inhibition zone diameters of meropenem, piperacillin/tazobactam and temocillin using CLSI disc diffusion methodology were recorded. Phenotypic and molecular detection of carbapenemases was performed on all isolates. Results A total of 1354 Enterobacteriaceae isolates, including 435 (32.1%) confirmed CPE isolates [OXA-48 (n = 323), KPC (n = 60), VIM (n = 32) and NDM (n = 20)] and 919 carbapenemase-negative isolates, were tested. Using recommended interpretative criteria, non-susceptibility to meropenem had poor sensitivity (52.0% by CLSI susceptibility breakpoint and 80.0% by EUCAST screening breakpoints), while non-susceptibility to piperacillin/tazobactam (according to CLSI breakpoint) or to temocillin (according to Fuchs, Barry, Thornsberry et al. Eur J Clin Microbiol 1985; 4: 30-3) was highly sensitive (99.8% and 98.2%, respectively) but poorly specific (29.4% and 42.9%, respectively) for the detection of CPE. Temocillin diameters <12 mm alone had high specificity (90.0%) and the combination of temocillin diameters ≥12 mm with piperacillin/tazobactam diameters ≥16 mm observed in 40% of all referred isolates displayed excellent negative predictive value (99.2%). Conclusions In geographical areas with a high prevalence of OXA-48 producers, recommended meropenem susceptibility or screening breakpoints failed to detect CPE in a large proportion of isolates. The combination of modified zone diameter cut-offs for piperacillin/tazobactam (≥16 mm) and temocillin (≥12 mm) can be used to rule out the presence of carbapenemase and avoid unnecessary additional testing for confirmation of CPE
- Published
- 2017
48. Multicentre evaluation of the BYG Carba v2.0 test, a simplified electrochemical assay for the rapid laboratory detection of carbapenemase-producing Enterobacteriaceae
- Author
-
Bogaerts, Pierre, Naas, Thierry, Dortet, Laurent, Huang, Te-Din, Glupczynski, Youri, Oueslati, Saoussen, Meunier, Danièle, Nonhoff, Claire, Yunus, Sami, Massart, Marion, Denis, Olivier, Woodford, Neil, Hopkins, Katie K.L., Bogaerts, Pierre, Naas, Thierry, Dortet, Laurent, Huang, Te-Din, Glupczynski, Youri, Oueslati, Saoussen, Meunier, Danièle, Nonhoff, Claire, Yunus, Sami, Massart, Marion, Denis, Olivier, Woodford, Neil, and Hopkins, Katie K.L.
- Abstract
Rapid detection of carbapenemase-producing Enterobacteriaceae (CPE) represents a major challenge for microbiology laboratories. We evaluated the BYG Carba v2.0 using a simplified protocol, which detects CPE in less than 30 minutes. This new procedure reduces the hands-on-time from 5 to one minute and only requires a limited amount of material (one to three colonies) thereby preventing the need for subculturing bacterial isolates to reach a larger amount of pure biomass. This multicentre study involved four European reference laboratories. For the 1181 isolates tested across four centres, BYG Carba v2.0 yielded overall sensitivity and specificity of 96.3% (CI95: 94.5-97.5) and 99.7% (CI95: 98.6-100) respectively. Considering only the 670 consecutive isolates tested prospectively, the BYG Carba v2.0 displayed overall positive and negative predictive values of 99.7% (CI95: 95.4-98.9) and 97.5% (CI95: 94.9-98.8). Regarding time to positivity, 85% of CPE detected were positive within ten minutes. The BYG Carba v2.0 is a new highly simplified, rapid and accurate electrochemical assay discriminating between CPE and non-CPE in less than 30 min. The real-time quantified signal allows objective and traceable interpretation of the results., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2017
49. Clinical case of cfr-positive MRSA CC398 in Belgium
- Author
-
Paridaens, Henry, Coussement, Julien, Argudín, María Ángeles M.A., Delaere, Bénédicte, Huang, Te-Din, Glupczynski, Youri, Denis, Olivier, Paridaens, Henry, Coussement, Julien, Argudín, María Ángeles M.A., Delaere, Bénédicte, Huang, Te-Din, Glupczynski, Youri, and Denis, Olivier
- Abstract
SCOPUS: le.j, info:eu-repo/semantics/published
- Published
- 2017
50. Comparative Evaluation of Four Phenotypic Tests for Detection of Carbapenemase-Producing Gram-Negative Bacteria
- Author
-
Noël, Audrey, primary, Huang, Te-Din, additional, Berhin, Catherine, additional, Hoebeke, Martin, additional, Bouchahrouf, Warda, additional, Yunus, Sami, additional, Bogaerts, Pierre, additional, and Glupczynski, Youri, additional
- Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.