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195 results on '"Huhndorf, Sabine"'

1. IMA Genome - F15: Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida

Author

Duong, Tuan Anh, Aylward, Janneke, Ametrano, Claudio Gennaro, Poudel, Barsha, Santana, Quentin Carlo, Wilken, Pieter Markus, Martin, Anke, Arun-Chinnappa, Kiruba Shankari, de Vos, Lieschen, DiStefano, Isabel, Grewe, Felix, Huhndorf, Sabine, Lumbsch, Helge Thorsten, Rakoma, Jostina Raesetsa, Poudel, Barsha, Steenkamp, Emma Theodora, Sun, Yukun, van der Nest, Magriet A., Wingfield, Michael John, Yilmaz, Neriman, and Wingfield, Brenda Diana

Published
2021
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7. IMA Genome - F13: Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti

Author

Wilken, P. Markus, Aylward, Janneke, Chand, Ramesh, Grewe, Felix, Lane, Frances A., Sinha, Shagun, Ametrano, Claudio, Distefano, Isabel, Divakar, Pradeep K., Duong, Tuan A., Huhndorf, Sabine, Kharwar, Ravindra N., Lumbsch, H. Thorsten, Navathe, Sudhir, Pérez, Carlos A., Ramírez-Berrutti, Nazaret, Sharma, Rohit, Sun, Yukun, Wingfield, Brenda D., and Wingfield, Michael J.

Published
2020
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16. The taxonomy of the model filamentous fungus Podospora anserina

Author

Ament-Velásquez, Sandra Lorena, Johannesson, Hanna, Giraud, Tatiana, Debuchy, Robert, Saupe, Sven J., Debets, Alfons J. M., Bastiaans, Eric, Malagnac, Fabienne, Grognet, Pierre, Peraza-Reyes, Leonardo, Gladieux, Pierre, Kruys, Åsa, Silar, Philippe, Huhndorf, Sabine M., Miller, Andrew N., Vogan, Aaron A., Uppsala Universitet [Uppsala], Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Wageningen University and Research [Wageningen] (WUR), Universidad Nacional Autónoma de México (UNAM), Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Interdisciplinaire des Energies de Demain (LIED (UMR_8236)), Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Field Museum of Natural History [Chicago, USA], Department of Electrical and Computer Engineering [Urbana] (University of Illinois), University of Illinois at Urbana-Champaign [Urbana], University of Illinois System-University of Illinois System, Swedish Research CouncilFormas, Universidad Nacional Autónoma de México = National Autonomous University of Mexico (UNAM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), and Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)

Subjects
Biologisk systematik, Fungi, Sordariales, Biological Systematics, PE&RC, Laboratorium voor Erfelijkheidsleer, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, lcsh:QK1-989, phylogenetics, taxonomy, Ascomycota, Triangularia, Podospora, Lasiosphaeriaceae, lcsh:Botany, Sordariomycetes, Laboratory of Genetics, Triangularia anserina, phylogenetics Podospora Podosporaceae taxonomy, Podosporaceae, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology
Abstract

The filamentous fungus Podospora anserina has been used as a model organism for more than 100 years and has proved to be an invaluable resource in numerous areas of research. Throughout this period, P. anserina has been embroiled in a number of taxonomic controversies regarding the proper name under which it should be called. The most recent taxonomic treatment proposed to change the name of this important species to Triangularia anserina. The results of past name changes of this species indicate that the broader research community is unlikely to accept this change, which will lead to nomenclatural instability and confusion in literature. Here, we review the phylogeny of the species closely related to P. anserina and provide evidence that currently available marker information is insufficient to resolve the relationships amongst many of the lineages. We argue that it is not only premature to propose a new name for P. anserina based on current data, but also that every effort should be made to retain P. anserina as the current name to ensure stability and to minimise confusion in scientific literature. Therefore, we synonymise Triangularia with Podospora and suggest that either the type species of Podospora be moved to P. anserina from P. fimiseda or that all species within the Podosporaceae be placed in the genus Podospora.

Published
2020

25. IMA Genome - F15

Author

Duong, Tuan Anh, primary, Aylward, Janneke, additional, Ametrano, Claudio Gennaro, additional, Poudel, Barsha, additional, Santana, Quentin Carlo, additional, Wilken, Pieter Markus, additional, Martin, Anke, additional, Arun-Chinnappa, Kiruba Shankari, additional, de Vos, Lieschen, additional, DiStefano, Isabel, additional, Grewe, Felix, additional, Huhndorf, Sabine, additional, Lumbsch, Helge Thorsten, additional, Rakoma, Jostina Raesetsa, additional, Steenkamp, Emma Theodora, additional, Sun, Yukun, additional, van der Nest, Magriet A., additional, Wingfield, Michael John, additional, Yilmaz, Neriman, additional, and Wingfield, Brenda Diana, additional

Published
2021
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36. Sordariales 28S ribosomal RNA gene, partial sequence

Author

Ament-velásquez, S.L., Johannesson, Hanna, Giraud, Tatiana, Debuchy, Robert, Saupe, Sven J., Debets, Alfons J.M., Bastiaans, Eric, Malagnac, Fabienne, Grognet, Pierre, Peraza-reyes, Leonardo, Gladieux, Pierre, Kruys, Åsa, Silar, Philippe, Huhndorf, Sabine M., Miller, Andrew N., Vogan, Aaron A., Ament-velásquez, S.L., Johannesson, Hanna, Giraud, Tatiana, Debuchy, Robert, Saupe, Sven J., Debets, Alfons J.M., Bastiaans, Eric, Malagnac, Fabienne, Grognet, Pierre, Peraza-reyes, Leonardo, Gladieux, Pierre, Kruys, Åsa, Silar, Philippe, Huhndorf, Sabine M., Miller, Andrew N., and Vogan, Aaron A.

Published
2021

37. The Amsterdam Declaration on Fungal Nomenclature

Author

Hawksworth, David L., Crous, Pedro W., Redhead, Scott A., Reynolds, Don R., Samson, Robert A., Seifert, Keith A., Taylor, John W., Wingfield, Michael J., Abaci, Özlem, Aime, Catherine, Asan, Ahmet, Bai, Feng-Yan, de Beer, Z. Wilhelm, Begerow, Dominik, Berikten, Derya, Boekhout, Teun, Buchanan, Peter K., Burgess, Treena, Buzina, Walter, Cai, Lei, Cannon, Paul F., Crane, J. Leland, Damm, Ulrike, Daniel, Heide-Marie, van Diepeningen, Anne D., Druzhinina, Irina, Dyer, Paul S., Eberhardt, Ursula, Fell, Jack W., Frisvad, Jens C., Geiser, David M., Geml, József, Glienke, Chirlei, Gräfenhan, Tom, Groenewald, Johannes Z., Groenewald, Marizeth, de Gruyter, Johannes, Guého-Kellermann, Eveline, Guo, Liang-Dong, Hibbett, David S., Hong, Seung-Beom, de Hoog, G. Sybren, Houbraken, Jos, Huhndorf, Sabine M., Hyde, Kevin D., Ismail, Ahmed, Johnston, Peter R., Kadaifciler, Duygu G., Kirk, Paul M., Kõljalg, Urmas, Kurtzman, Cletus P., Lagneau, Paul-Emile, Lévesque, C. André, Liu, Xingzhong, Lombard, Lorenzo, Meyer, Wieland, Miller, Andrew, Minter, David W., Najafzadeh, Mohammad Javad, Norvell, Lorelei, Ozerskaya, Svetlana M., Öziç, Rasime, Pennycook, Shaun R., Peterson, Stephen W., Pettersson, Olga V., Quaedvlieg, William, Robert, Vincent A., Ruibal, Constantino, Schnürer, Johan, Schroers, Hans-Josef, Shivas, Roger, Slippers, Bernard, Spierenburg, Henk, Takashima, Masako, Taşkoin, Evrim, Thines, Marco, Thrane, Ulf, Uztan, Alev Haliki, van Raak, Marcel, Varga, János, Vasco, Aida, Verkley, Gerard, Videira, Sandra I. R., de Vries, Ronald P., Weir, Bevan S., Yilmaz, Neriman, Yurkov, Andrey, and Zhang, Ning

Published
2011
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38. The taxonomy of the model filamentous fungus Podospora anserina

Author

Ament-velásquez, S.L., Johannesson, Hanna, Giraud, Tatiana, Debuchy, Robert, Saupe, Sven J., Debets, Alfons J.M., Bastiaans, Eric, Malagnac, Fabienne, Grognet, Pierre, Peraza-reyes, Leonardo, Gladieux, Pierre, Kruys, Åsa, Silar, Philippe, Huhndorf, Sabine M., Miller, Andrew N., Vogan, Aaron A., Ament-velásquez, S.L., Johannesson, Hanna, Giraud, Tatiana, Debuchy, Robert, Saupe, Sven J., Debets, Alfons J.M., Bastiaans, Eric, Malagnac, Fabienne, Grognet, Pierre, Peraza-reyes, Leonardo, Gladieux, Pierre, Kruys, Åsa, Silar, Philippe, Huhndorf, Sabine M., Miller, Andrew N., and Vogan, Aaron A.

Abstract

The filamentous fungus Podospora anserina has been used as a model organism for more than 100 years and has proved to be an invaluable resource in numerous areas of research. Throughout this period, P. anserina has been embroiled in a number of taxonomic controversies regarding the proper name under which it should be called. The most recent taxonomic treatment proposed to change the name of this important species to Triangularia anserina. The results of past name changes of this species indicate that the broader research community is unlikely to accept this change, which will lead to nomenclatural instability and confusion in literature. Here, we review the phylogeny of the species closely related to P. anserina and provide evidence that currently available marker information is insufficient to resolve the relationships amongst many of the lineages. We argue that it is not only premature to propose a new name for P. anserina based on current data, but also that every effort should be made to retain P. anserina as the current name to ensure stability and to minimise confusion in scientific literature. Therefore, we synonymise Triangularia with Podospora and suggest that either the type species of Podospora be moved to P. anserina from P. fimiseda or that all species within the Podosporaceae be placed in the genus Podospora.

Published
2020

39. IMA Genome - F13

Author

Wilken, P. Markus, primary, Aylward, Janneke, additional, Chand, Ramesh, additional, Grewe, Felix, additional, Lane, Frances A., additional, Sinha, Shagun, additional, Ametrano, Claudio, additional, Distefano, Isabel, additional, Divakar, Pradeep K., additional, Duong, Tuan A., additional, Huhndorf, Sabine, additional, Kharwar, Ravindra N., additional, Lumbsch, H. Thorsten, additional, Navathe, Sudhir, additional, Pérez, Carlos A., additional, Ramírez-Berrutti, Nazaret, additional, Sharma, Rohit, additional, Sun, Yukun, additional, Wingfield, Brenda D., additional, and Wingfield, Michael J., additional

Published
2020
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41. Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi)

Author

Kruys, Åsa, Huhndorf, Sabine M, Miller, Andrew N, Kruys, Åsa, Huhndorf, Sabine M, and Miller, Andrew N

Abstract

The phylogenetic relationships of Lasiosphaeriaceae are complicated in that the family is paraphyletic and includes Sordariaceae and Chaetomiaceae, as well as several polyphyletic genera. This study focuses on the phylogenetic relationships of the coprophilous genera, Anopodium, Apodospora, Arnium, Fimetariella and Zygospermella. They are traditionally circumscribed based on ascospore characters, which have proven homoplasious in other genera within the family. Our results based on LSU nrDNA and ß–tubulin sequences distinguish four lineages ofLasiosphaeriaceae taxa. Anopodium joins the clade of morphologically similar, yellow-pigmented species of Cercophora and Lasiosphaeria. Apodospora is monophyletic and joins a larger group of taxa with unclear affinities to each other, while Arnium is polyphyletic being scattered throughout three of the four major clades of Lasiosphaeriaceae. Fimitariella is represented by a single collection and joins the clade containing Cercophora scortea and Podospora appendiculata. Zygospermellashows affinities to the Lasiosphaeris clade. Based on a combination of morphological and molecular data, Echria stat. nov. is recognized at the genus level for the former Arnium section and two new combinations are proposed: E. gigantospora and E. macrotheca.

Published
2015
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43. Preserving Accuracy in GenBank

Author

Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., Hughes, Karen, Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., and Hughes, Karen

Published
2008

44. A higher-level phylogenetic classification of the Fungi

Author

Hibbett, David S., Binder, Manfred, Bischoff, Joseph F., Blackwell, Meredith, Cannon, Paul F., Eriksson, Ove E., Huhndorf, Sabine, James, Timothy, Kirk, Paul M., Lücking, Robert, Thorsten Lumbsch, H., Lutzoni, François, Matheny, P. Brandon, McLaughlin, David J., Powell, Martha J., Redhead, Scott, Schoch, Conrad L., Spatafora, Joseph W., Stalpers, Joost A., Vilgalys, Rytas, Aime, M. Catherine, Aptroot, André, Bauer, Robert, Begerow, Dominik, Benny, Gerald L., Castlebury, Lisa A., Crous, Pedro W., Dai, Yu-Cheng, Gams, Walter, Geiser, David M., Griffith, Gareth W., Gueidan, Cécile, Hawksworth, David L., Hestmark, Geir, Hosaka, Kentaro, Humber, Richard A., Hyde, Kevin D., Ironside, Joseph E., Kõljalg, Urmas, Kurtzman, Cletus P., Larsson, Karl-Henrik, Lichtwardt, Robert, Longcore, Joyce, Miadlikowska, Jolanta, Miller, Andrew, Moncalvo, Jean-Marc, Mozley-Standridge, Sharon, Oberwinkler, Franz, Parmasto, Erast, Reeb, Valérie, Rogers, Jack D., Roux, Claude, Ryvarden, Leif, Sampaio, José Paulo, Schüssler, Arthur, Sugiyama, Junta, Thorn, R. Greg, Tibell, Leif, Untereiner, Wendy A., Walker, Christopher, Wang, Zheng, Weir, Alex, Weiss, Michael, White, Merlin M., Winka, Katarina, Yao, Yi-Jian, Zhang, Ning, Hibbett, David S., Binder, Manfred, Bischoff, Joseph F., Blackwell, Meredith, Cannon, Paul F., Eriksson, Ove E., Huhndorf, Sabine, James, Timothy, Kirk, Paul M., Lücking, Robert, Thorsten Lumbsch, H., Lutzoni, François, Matheny, P. Brandon, McLaughlin, David J., Powell, Martha J., Redhead, Scott, Schoch, Conrad L., Spatafora, Joseph W., Stalpers, Joost A., Vilgalys, Rytas, Aime, M. Catherine, Aptroot, André, Bauer, Robert, Begerow, Dominik, Benny, Gerald L., Castlebury, Lisa A., Crous, Pedro W., Dai, Yu-Cheng, Gams, Walter, Geiser, David M., Griffith, Gareth W., Gueidan, Cécile, Hawksworth, David L., Hestmark, Geir, Hosaka, Kentaro, Humber, Richard A., Hyde, Kevin D., Ironside, Joseph E., Kõljalg, Urmas, Kurtzman, Cletus P., Larsson, Karl-Henrik, Lichtwardt, Robert, Longcore, Joyce, Miadlikowska, Jolanta, Miller, Andrew, Moncalvo, Jean-Marc, Mozley-Standridge, Sharon, Oberwinkler, Franz, Parmasto, Erast, Reeb, Valérie, Rogers, Jack D., Roux, Claude, Ryvarden, Leif, Sampaio, José Paulo, Schüssler, Arthur, Sugiyama, Junta, Thorn, R. Greg, Tibell, Leif, Untereiner, Wendy A., Walker, Christopher, Wang, Zheng, Weir, Alex, Weiss, Michael, White, Merlin M., Winka, Katarina, Yao, Yi-Jian, and Zhang, Ning

Abstract

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotina. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella.

Published
2007
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45. A higher-level phylogenetic classification of the Fungi

Author

Hibbett, David S, Binder, Manfred, Bischoff, Joseph F, Blackwell, Meredith, Cannon, Paul F, Eriksson, Ove E, Huhndorf, Sabine, James, Timothy, Kirk, Paul M, Lücking, Robert, Thorsten Lumbsch, H, Lutzoni, François, Matheny, P Brandon, McLaughlin, David J, Powell, Martha J, Redhead, Scott, Schoch, Conrad L, Spatafora, Joseph W, Stalpers, Joost A, Vilgalys, Rytas, Aime, M Catherine, Aptroot, André, Bauer, Robert, Begerow, Dominik, Benny, Gerald L, Castlebury, Lisa A, Crous, Pedro W, Dai, Yu-Cheng, Gams, Walter, Geiser, David M, Griffith, Gareth W, Gueidan, Cécile, Hawksworth, David L, Hestmark, Geir, Hosaka, Kentaro, Humber, Richard A, Hyde, Kevin D, Ironside, Joseph E, Kõljalg, Urmas, Kurtzman, Cletus P, Larsson, Karl-Henrik, Lichtwardt, Robert, Longcore, Joyce, Miadlikowska, Jolanta, Miller, Andrew, Moncalvo, Jean-Marc, Mozley-Standridge, Sharon, Oberwinkler, Franz, Parmasto, Erast, Reeb, Valérie, Rogers, Jack D, Roux, Claude, Ryvarden, Leif, Sampaio, José Paulo, Schüssler, Arthur, Sugiyama, Junta, Thorn, R Greg, Tibell, Leif, Untereiner, Wendy A, Walker, Christopher, Wang, Zheng, Weir, Alex, Weiss, Michael, White, Merlin M, Winka, Katarina, Yao, Yi-Jian, Zhang, Ning, Hibbett, David S, Binder, Manfred, Bischoff, Joseph F, Blackwell, Meredith, Cannon, Paul F, Eriksson, Ove E, Huhndorf, Sabine, James, Timothy, Kirk, Paul M, Lücking, Robert, Thorsten Lumbsch, H, Lutzoni, François, Matheny, P Brandon, McLaughlin, David J, Powell, Martha J, Redhead, Scott, Schoch, Conrad L, Spatafora, Joseph W, Stalpers, Joost A, Vilgalys, Rytas, Aime, M Catherine, Aptroot, André, Bauer, Robert, Begerow, Dominik, Benny, Gerald L, Castlebury, Lisa A, Crous, Pedro W, Dai, Yu-Cheng, Gams, Walter, Geiser, David M, Griffith, Gareth W, Gueidan, Cécile, Hawksworth, David L, Hestmark, Geir, Hosaka, Kentaro, Humber, Richard A, Hyde, Kevin D, Ironside, Joseph E, Kõljalg, Urmas, Kurtzman, Cletus P, Larsson, Karl-Henrik, Lichtwardt, Robert, Longcore, Joyce, Miadlikowska, Jolanta, Miller, Andrew, Moncalvo, Jean-Marc, Mozley-Standridge, Sharon, Oberwinkler, Franz, Parmasto, Erast, Reeb, Valérie, Rogers, Jack D, Roux, Claude, Ryvarden, Leif, Sampaio, José Paulo, Schüssler, Arthur, Sugiyama, Junta, Thorn, R Greg, Tibell, Leif, Untereiner, Wendy A, Walker, Christopher, Wang, Zheng, Weir, Alex, Weiss, Michael, White, Merlin M, Winka, Katarina, Yao, Yi-Jian, and Zhang, Ning

Abstract

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotina. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella.

Published
2007

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