18 results on '"J. Dallmann"'
Search Results
2. Bedform segregation and locking increase storage of natural and synthetic particles in rivers
- Author
-
J. Dallmann, C. B. Phillips, Y. Teitelbaum, Edwin Y. Saavedra Cifuentes, N. Sund, R. Schumer, S. Arnon, and A. I. Packman
- Subjects
Science - Abstract
Here the authors show that hyporheic flow, bed morphology, and bed stability are intimately related, and that this relationship is expressed as distinct locked and segregated states of bedform dynamics, which carries implications for river system behavior in general and the storage of carbon, nutrients, and contaminants in particular.
- Published
- 2021
- Full Text
- View/download PDF
3. Integrative Biomimetics of Autonomous Hexapedal Locomotion
- Author
-
Volker Dürr, Paolo P. Arena, Holk Cruse, Chris J. Dallmann, Alin Drimus, Thierry Hoinville, Tammo Krause, Stefan Mátéfi-Tempfli, Jan Paskarbeit, Luca Patanè, Mattias Schäffersmann, Malte Schilling, Josef Schmitz, Roland Strauss, Leslie Theunissen, Alessandra Vitanza, and Axel Schneider
- Subjects
motor control ,walking ,compliance ,leg coordination ,proprioception ,load sensing ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Despite substantial advances in many different fields of neurorobotics in general, and biomimetic robots in particular, a key challenge is the integration of concepts: to collate and combine research on disparate and conceptually disjunct research areas in the neurosciences and engineering sciences. We claim that the development of suitable robotic integration platforms is of particular relevance to make such integration of concepts work in practice. Here, we provide an example for a hexapod robotic integration platform for autonomous locomotion. In a sequence of six focus sections dealing with aspects of intelligent, embodied motor control in insects and multipedal robots—ranging from compliant actuation, distributed proprioception and control of multiple legs, the formation of internal representations to the use of an internal body model—we introduce the walking robot HECTOR as a research platform for integrative biomimetics of hexapedal locomotion. Owing to its 18 highly sensorized, compliant actuators, light-weight exoskeleton, distributed and expandable hardware architecture, and an appropriate dynamic simulation framework, HECTOR offers many opportunities to integrate research effort across biomimetics research on actuation, sensory-motor feedback, inter-leg coordination, and cognitive abilities such as motion planning and learning of its own body size.
- Published
- 2019
- Full Text
- View/download PDF
4. Synaptic architecture of leg and wing motor control networks in Drosophila
- Author
-
Ellen Lesser, Anthony W. Azevedo, Jasper S. Phelps, Leila Elabbady, Andrew P. Cook, Brandon Mark, Sumiya Kuroda, Anne Sustar, Anthony J. Moussa, Chris J. Dallmann, Sweta Agrawal, Su-Yee J. Lee, Brandon G. Pratt, Kyobi Skutt-Kakari, Stephan Gerhard, Ran Lu, Nico Kemnitz, Kisuk Lee, Akhilesh Halageri, Manuel Castro, Dodam Ih, Jay Gager, Marwan Tammam, Sven Dorkenwald, Forrest C. Collman, Casey M Schneider-Mizell, Derrick Brittain, Chris S Jordan, H Sebastian Seung, Thomas Macrina, Michael H Dickinson, Wei-Chung Allen Lee, and John C. Tuthill
- Subjects
Article - Abstract
Animal movement is controlled by motor neurons (MNs), which project out of the central nervous system to activate muscles. Because individual muscles may be used in many different behaviors, MN activity must be flexibly coordinated by dedicated premotor circuitry, the organization of which remains largely unknown. Here, we use comprehensive reconstruction of neuron anatomy and synaptic connectivity from volumetric electron microscopy (i.e., connectomics) to analyze the wiring logic of motor circuits controlling theDrosophilaleg and wing. We find that both leg and wing premotor networks are organized into modules that link MNs innervating muscles with related functions. However, the connectivity patterns within leg and wing motor modules are distinct. Leg premotor neurons exhibit proportional gradients of synaptic input onto MNs within each module, revealing a novel circuit basis for hierarchical MN recruitment. In comparison, wing premotor neurons lack proportional synaptic connectivity, which may allow muscles to be recruited in different combinations or with different relative timing. By comparing the architecture of distinct limb motor control systems within the same animal, we identify common principles of premotor network organization and specializations that reflect the unique biomechanical constraints and evolutionary origins of leg and wing motor control.
- Published
- 2023
5. Field Performance and Susceptibility to Fungal Pathogens of Eleven Blackberry Cultivars
- Author
-
Marcie J. Dallmann, Guido Schnabel, Brian T. Lawrence, Meng-Jun Hu, D.R. Ouellette, and Juan Carlos Melgar
- Subjects
0106 biological sciences ,Integrated pest management ,Ecology ,Fruit weight ,04 agricultural and veterinary sciences ,Plant Science ,Horticulture ,Biology ,01 natural sciences ,Yield (wine) ,Cultivar ,0405 other agricultural sciences ,Agronomy and Crop Science ,010606 plant biology & botany ,040502 food science - Abstract
Horticultural performance of eleven blackberry cultivars, including two primocane-fruiting cultivars, was evaluated over three years after fruiting began at the Musser Fruit Research Center in Sout...
- Published
- 2020
- Full Text
- View/download PDF
6. Fine‐Particle Deposition, Retention, and Resuspension Within a Sand‐Bedded Stream Are Determined by Streambed Morphodynamics
- Author
-
Douglas J. Jerolmack, J. Dallmann, Colin B. Phillips, and Aaron I. Packman
- Subjects
Hydrology ,010504 meteorology & atmospheric sciences ,Flood myth ,0207 environmental engineering ,Sediment ,Environmental science ,02 engineering and technology ,020701 environmental engineering ,01 natural sciences ,Beach morphodynamics ,0105 earth and related environmental sciences ,Water Science and Technology ,Particle deposition - Published
- 2019
- Full Text
- View/download PDF
7. Evaluation of force feedback in walking using joint torques as 'naturalistic' stimuli
- Author
-
Sasha N. Zill, Nicholas S. Szczecinski, Josef Schmitz, Ansgar Büschges, and Chris J. Dallmann
- Subjects
Feedback, Physiological ,0303 health sciences ,Insecta ,Physiology ,Computer science ,General Neuroscience ,Campaniform sensilla ,Extremities ,Sensory system ,Walking ,Inverse dynamics ,Weight-Bearing ,03 medical and health sciences ,0302 clinical medicine ,Torque ,Control theory ,Animals ,Female ,Sensilla ,Mechanoreceptors ,Joint (geology) ,030217 neurology & neurosurgery ,030304 developmental biology ,Haptic technology - Abstract
Control of adaptive walking requires the integration of sensory signals of muscle force and load. We have studied how mechanoreceptors (tibial campaniform sensilla) encode 'naturalistic' stimuli derived from joint torques of stick insects walking on a horizontal substrate. Previous studies showed that forces applied to the legs using the mean torque profiles of a proximal joint were highly effective in eliciting motor activities. However, substantial variations in torque direction and magnitude occurred at the more distal femoro-tibial joint, which can generate braking or propulsive forces and provide lateral stability. To determine how these forces are encoded, we utilized torque waveforms of individual steps that had maximum values in stance in the directions of flexion or extension. Analysis of kinematic data showed that the torques in different directions tended to occur in different ranges of joint angles. Variations within stance were not accompanied by comparable changes in joint angle but often reflected vertical ground reaction forces and leg support of body load. Application of torque waveforms elicited sensory discharges with variations in firing frequency similar to those seen in freely walking insects. All sensilla directionally encoded the dynamics of force increases and showed hysteresis to transient force decreases. Smaller receptors exhibited more tonic firing. Our findings suggest that dynamic sensitivity in force feedback can modulate ongoing muscle activities to stabilize distal joints when large forces are generated at proximal joints. Further, use of 'naturalistic' stimuli can reproduce characteristics seen in freely moving animals that are absent in conventional restrained preparations.
- Published
- 2021
- Full Text
- View/download PDF
8. Large eddy simulation of turbulent flow over and through a rough permeable bed
- Author
-
Gregory J. Wagner, Yanping Lian, J. Dallmann, Wing Kam Liu, K. R. Roche, Aaron I. Packman, and B. Sonin
- Subjects
General Computer Science ,Turbulence ,General Engineering ,Mechanics ,01 natural sciences ,010305 fluids & plasmas ,Physics::Fluid Dynamics ,010101 applied mathematics ,Momentum ,Closure (computer programming) ,Flow (mathematics) ,Flow velocity ,Eddy ,0103 physical sciences ,0101 mathematics ,Freestream ,Geology ,Large eddy simulation - Abstract
This work elucidates the impacts of model construction choices on turbulence characteristics and solution fidelity in the simulation of coupled freestream and porous turbulent flows. A freestream-porewater interface is modeled numerically as a matrix of regularly spaced spheres submerged in a surrounding flow. Simulations are conducted to solve the continuity and momentum equations via Large Eddy Simulation (LES) using the Control Volume Finite Element Method (CVFEM) on an unstructured, surface-conforming mesh, and simulated flow fields are compared with experimental results. Key parameters are identified, allowing for model creation recommendations. A mesh refinement study is performed, and characteristic required mesh sizes in both the bed and the freestream are identified that achieve a good trade-off between accuracy and efficiency. Additionally, it is shown that similar to wall-bounded flows, the computational domain for a coupled freestream and porous flow must be sufficiently large to capture the relevant largest-sized eddies and to avoid the spanwise locking of flow structures; such structures may affect the flow field in the pores as well as in the freestream. Dimensions of 7.5H × 3.5H × H, where H is the freestream height, are found to give satisfactory comparison with experimental results for the cases studied. Finally, it is found that the wall-adapting local eddy-viscosity (WALE) turbulence closure scheme is better able to model the fluid velocity in the problem domain compared with the Smagorinsky model. Failure to select the proper turbulence closure model or domain size leads to a misrepresentation of the turbulent structures. Because of the strong coupling between the porewater flow and the freestream, these modeling errors propagate in both flow regions.
- Published
- 2019
- Full Text
- View/download PDF
9. Force dynamics and synergist muscle activation in stick insects: the effects of using joint torques as mechanical stimuli
- Author
-
Sasha N. Zill, Chris J. Dallmann, Sumaiya Chaudhry, Ansgar Büschges, and Josef Schmitz
- Subjects
Male ,0301 basic medicine ,Physiology ,Campaniform sensilla ,Cockroaches ,Sensory system ,Motor Activity ,Computer Science::Robotics ,Leg muscle ,03 medical and health sciences ,0302 clinical medicine ,Animals ,Torque ,Muscle, Skeletal ,Joint (geology) ,Feedback, Physiological ,Physics ,General Neuroscience ,Muscle activation ,Biomechanical Phenomena ,body regions ,030104 developmental biology ,Force dynamics ,Female ,Joints ,Neuroscience ,030217 neurology & neurosurgery ,Research Article - Abstract
Many sensory systems are tuned to specific parameters of behaviors and have effects that are task-specific. We have studied how force feedback contributes to activation of synergist muscles in serially homologous legs of stick insects. Forces were applied using conventional half sine or ramp and hold functions. We also utilized waveforms of joint torques calculated from experiments in freely walking animals. In all legs, forces applied to either the tarsus (foot) or proximal leg segment (trochanter) activated synergist muscles that generate substrate grip and support but coupling of the depressor muscle to tarsal forces was weak in the front legs. Activation of trochanteral receptors using ramp and hold functions generated positive feedback to the depressor muscle in all legs when animals were induced to seek substrate grip. However, discharges of the synergist flexor muscle showed adaptation at moderate force levels. In contrast, application of forces using torque waveforms, which do not have a static hold phase, produced sustained discharges in muscle synergies with little adaptation. Firing frequencies reflected the magnitude of ground reaction forces, were graded to changes in force amplitude and could also be modulated by transient force perturbations added to the waveforms. Comparison of synergist activation by torques and ramp and hold functions revealed a strong influence of force dynamics (dF/dt). These studies support the idea that force receptors can act to synchronously tune muscle synergies to the range of force magnitudes and dynamics that occur in each leg according to their specific use in behaviorMany sensory systems are tuned to specific parameters of behaviors and have effects that are task-specific. We have studied how force feedback contributes to activation of synergist muscles in serially homologous legs of stick insects. Forces were applied using conventional half sine or ramp and hold functions. We also utilized waveforms of joint torques calculated from experiments in freely walking animals. In all legs, forces applied to either the tarsus (foot) or proximal leg segment (trochanter) activated synergist muscles that generate substrate grip and support but coupling of the depressor muscle to tarsal forces was weak in the front legs. Activation of trochanteral receptors using ramp and hold functions generated positive feedback to the depressor muscle in all legs when animals were induced to seek substrate grip. However, discharges of the synergist flexor muscle showed adaptation at moderate force levels. In contrast, application of forces using torque waveforms, which do not have a static hold phase, produced sustained discharges in muscle synergies with little adaptation. Firing frequencies reflected the magnitude of ground reaction forces, were graded to changes in force amplitude and could also be modulated by transient force perturbations added to the waveforms. Comparison of synergist activation by torques and ramp and hold functions revealed a strong influence of force dynamics (dF/dt). These studies support the idea that force receptors can act to synchronously tune muscle synergies to the range of force magnitudes and dynamics that occur in each leg according to their specific use in behavior
- Published
- 2018
- Full Text
- View/download PDF
10. A leg to stand on: computational models of proprioception
- Author
-
Chris J. Dallmann, Pierre Karashchuk, John C. Tuthill, and Bingni W. Brunton
- Subjects
0301 basic medicine ,03 medical and health sciences ,Computational model ,030104 developmental biology ,0302 clinical medicine ,Proprioception ,Physiology ,Computer science ,Physiology (medical) ,Motor control ,Neuroscience ,Article ,030217 neurology & neurosurgery - Abstract
Dexterous motor control requires feedback from proprioceptors, internal mechanosensory neurons that sense the body’s position and movement. An outstanding question in neuroscience is how diverse proprioceptive feedback signals contribute to flexible motor control. Genetic tools now enable targeted recording and perturbation of proprioceptive neurons in behaving animals; however, these experiments can be challenging to interpret, due to the tight coupling of proprioception and motor control. Here, we argue that understanding the role of proprioceptive feedback in controlling behavior will be aided by the development of multiscale models of sensorimotor loops. We review current phenomenological and structural models for proprioceptor encoding and discuss how they may be integrated with existing models of posture, movement, and body state estimation.
- Published
- 2021
- Full Text
- View/download PDF
11. The role of vibration in tactile speed perception
- Author
-
X Alessandro Moscatelli, Marc O. Ernst, and Chris J. Dallmann
- Subjects
Adult ,Male ,Masking (art) ,Adolescent ,Physiology ,Acoustics ,Motion Perception ,Texture (music) ,Settore BIO/09 ,Vibration ,psychophysics ,mechanoreceptive afferents ,Psychophysics ,Humans ,speed discrimination ,tactile speed perception ,vibrotactile masking ,Brain ,Female ,Middle Aged ,Perceptual Masking ,Touch Perception ,Sensory cue ,Slip (vehicle dynamics) ,Physics ,Communication ,business.industry ,General Neuroscience ,Noise ,Amplitude ,Call for Papers ,business - Abstract
The relative motion between the surface of an object and our fingers produces patterns of skin deformation such as stretch, indentation, and vibrations. In this study, we hypothesized that motion-induced vibrations are combined with other tactile cues for the discrimination of tactile speed. Specifically, we hypothesized that vibrations provide a critical cue to tactile speed on surfaces lacking individually detectable features like dots or ridges. Thus masking vibrations unrelated to slip motion should impair the discriminability of tactile speed, and the effect should be surface-dependent. To test this hypothesis, we measured the precision of participants in discriminating the speed of moving surfaces having either a fine or a ridged texture, while adding masking vibratory noise in the working range of the fast-adapting mechanoreceptive afferents. Vibratory noise significantly reduced the precision of speed discrimination, and the effect was much stronger on the fine-textured than on the ridged surface. On both surfaces, masking vibrations at intermediate frequencies of 64 Hz (65-μm peak-to-peak amplitude) and 128 Hz (10 μm) had the strongest effect, followed by high-frequency vibrations of 256 Hz (1 μm) and low-frequency vibrations of 32 Hz (50 and 25 μm). These results are consistent with our hypothesis that slip-induced vibrations concur to the discrimination of tactile speed.
- Published
- 2015
- Full Text
- View/download PDF
12. A load-based mechanism for inter-leg coordination in insects
- Author
-
Josef Schmitz, Thierry Hoinville, Volker Dürr, and Chris J. Dallmann
- Subjects
0301 basic medicine ,electromyography ,Engineering ,Insecta ,insect locomotion ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Insect locomotion ,motor control ,Animals ,Sensilla ,General Environmental Science ,Communication ,Morphology and Biomechanics ,stance-to-swing transition ,General Immunology and Microbiology ,Mechanism (biology) ,business.industry ,Muscles ,campaniform sensilla ,Motor control ,Extremities ,General Medicine ,Biomechanical Phenomena ,body regions ,030104 developmental biology ,ground reaction force ,General Agricultural and Biological Sciences ,business ,Neuroscience ,Locomotion ,030217 neurology & neurosurgery ,Research Article - Abstract
Animals rely on an adaptive coordination of legs during walking. However, which specific mechanisms underlie coordination during natural locomotion remains largely unknown. One hypothesis is that legs can be coordinated mechanically based on a transfer of body load from one leg to another. To test this hypothesis, we simultaneously recorded leg kinematics, ground reaction forces and muscle activity in freely walking stick insects (Carausius morosus). Based on torque calculations, we show that load sensors (campaniform sensilla) at the proximal leg joints are well suited to encode the unloading of the leg in individual steps. The unloading coincides with a switch from stance to swing muscle activity, consistent with a load reflex promoting the stance-to-swing transition. Moreover, a mechanical simulation reveals that the unloading can be ascribed to the loading of a specific neighbouring leg, making it exploitable for inter-leg coordination. We propose that mechanically mediated load-based coordination is used across insects analogously to mammals.
- Published
- 2017
- Full Text
- View/download PDF
13. Mechanical processing via passive dynamic properties of the cockroach antenna can facilitate control during rapid running
- Author
-
Alican Demir, Kaushik Jayaram, Noah J. Cowan, Jean Michel Mongeau, Robert J. Full, and Chris J. Dallmann
- Subjects
Arthropod Antennae ,Neuromechanics ,Thigmotaxis ,Physiology ,Computer science ,Acoustics ,Stiffness ,STRIDE ,Perturbation (astronomy) ,Flexural rigidity ,Aquatic Science ,Biomechanical Phenomena ,Running ,Touch ,Insect Science ,medicine ,Robot ,Animals ,Periplaneta ,Animal Science and Zoology ,medicine.symptom ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Tactile sensor - Abstract
The integration of information from dynamic sensory structures operating on a moving body is a challenge for locomoting animals and engineers seeking to design agile robots. As a tactile sensor is a physical linkage mediating mechanical interactions between body and environment, mechanical tuning of the sensor is critical for effective control. We determined the open-loop dynamics of a tactile sensor, specifically the antenna of the American cockroach, Periplaneta americana, an animal that escapes predators by using its antennae during rapid closed-loop tactilely mediated course control. Geometrical measurements and static bending experiments revealed an exponentially decreasing flexural stiffness (EI) from base to tip. Quasi-static experiments with a physical model support the hypothesis that a proximodistally decreasing EI can simplify control by increasing preview distance and allowing effective mapping to a putative control variable - body-to-wall distance - compared to an antenna with constant EI. We measured the free response at the tip of the antenna following step deflections and determined that the antenna rapidly damps large deflections: over 90% of the perturbation is rejected within the first cycle, corresponding to almost one stride period during high-speed running (~50 ms). An impulse-like perturbation near the tip revealed dynamics that were characteristic of an inelastic collision, keeping the antenna in contact with an object after impact. We contend that proximodistally decreasing stiffness, high damping, and inelasticity simplify control during high-speed tactile tasks by increasing preview distance, providing a one-dimensional map between antennal bending and body-to-wall distance, and increasing the reliability of tactile information.
- Published
- 2014
14. CIMT 2024: Report on the 21st Annual Meeting of the Association for Cancer Immunotherapy.
- Author
-
Ahrberg Y, Dallmann J, Freitag J, Hassan A, Jung C, Kiefer J, Muralidharan AM, Peter M, and Beck JD
- Subjects
- Humans, Artificial Intelligence, Germany, Neoplasms therapy, Neoplasms immunology, Immunotherapy methods
- Abstract
The 21
st Association for Cancer Immunotherapy (CIMT) Annual Meeting took place from May 15th to May 17th in Mainz, Germany, and was attended by a total of 855 academic and clinical professionals hailing from 33 different countries. The conference served as a platform for these experts to convene and discuss the latest breakthroughs in cancer immunology and immunotherapy research. Dedicated sessions covering advancements in artificial intelligence tools for cancer immunotherapy research, as well as the landscape of cancer care and cancer immunotherapy trials on the African continent, prompted lively and informative discussions among the attendees. This report aims to provide an overview of the most noteworthy highlights and key takeaways from CIMT2024.- Published
- 2024
- Full Text
- View/download PDF
15. Border-zone cardiomyocytes and macrophages contribute to remodeling of the extracellular matrix to promote cardiomyocyte invasion during zebrafish cardiac regeneration.
- Author
-
Constanty F, Wu B, Wei KH, Lin IT, Dallmann J, Guenther S, Lautenschlaeger T, Priya R, Lai SL, Stainier DYR, and Beisaw A
- Abstract
Despite numerous advances in our understanding of zebrafish cardiac regeneration, an aspect that remains less studied is how regenerating cardiomyocytes invade, and eventually replace, the collagen-containing fibrotic tissue following injury. Here, we provide an in-depth analysis of the process of cardiomyocyte invasion using live-imaging and histological approaches. We observed close interactions between protruding cardiomyocytes and macrophages at the wound border zone, and macrophage-deficient irf8 mutant zebrafish exhibited defects in extracellular matrix (ECM) remodeling and cardiomyocyte protrusion into the injured area. Using a resident macrophage ablation model, we show that defects in ECM remodeling at the border zone and subsequent cardiomyocyte protrusion can be partly attributed to a population of resident macrophages. Single-cell RNA-sequencing analysis of cells at the wound border revealed a population of cardiomyocytes and macrophages with fibroblast-like gene expression signatures, including the expression of genes encoding ECM structural proteins and ECM-remodeling proteins. The expression of mmp14b , which encodes a membrane-anchored matrix metalloproteinase, was restricted to cells in the border zone, including cardiomyocytes, macrophages, fibroblasts, and endocardial/endothelial cells. Genetic deletion of mmp14b led to a decrease in 1) macrophage recruitment to the border zone, 2) collagen degradation at the border zone, and 3) subsequent cardiomyocyte invasion. Furthermore, cardiomyocyte-specific overexpression of mmp14b was sufficient to enhance cardiomyocyte invasion into the injured tissue and along the apical surface of the wound. Altogether, our data shed important insights into the process of cardiomyocyte invasion of the collagen-containing injured tissue during cardiac regeneration. They further suggest that cardiomyocytes and resident macrophages contribute to ECM remodeling at the border zone to promote cardiomyocyte replenishment of the fibrotic injured tissue.
- Published
- 2024
- Full Text
- View/download PDF
16. Author Correction: Isolated Rh atoms in dehydrogenation catalysis.
- Author
-
Wittkämper H, Hock R, Weißer M, Dallmann J, Vogel C, Raman N, Taccardi N, Haumann M, Wasserscheid P, Hsieh TE, Maisel S, Moritz M, Wichmann C, Frisch J, Gorgoi M, Wilks RG, Bär M, Wu M, Spiecker E, Görling A, Unruh T, Steinrück HP, and Papp C
- Published
- 2023
- Full Text
- View/download PDF
17. Isolated Rh atoms in dehydrogenation catalysis.
- Author
-
Wittkämper H, Hock R, Weißer M, Dallmann J, Vogel C, Raman N, Taccardi N, Haumann M, Wasserscheid P, Hsieh TE, Maisel S, Moritz M, Wichmann C, Frisch J, Gorgoi M, Wilks RG, Bär M, Wu M, Spiecker E, Görling A, Unruh T, Steinrück HP, and Papp C
- Abstract
Isolated active sites have great potential to be highly efficient and stable in heterogeneous catalysis, while enabling low costs due to the low transition metal content. Herein, we present results on the synthesis, first catalytic trials, and characterization of the Ga
9 Rh2 phase and the hitherto not-studied Ga3 Rh phase. We used XRD and TEM for structural characterization, and with XPS, EDX we accessed the chemical composition and electronic structure of the intermetallic compounds. In combination with catalytic tests of these phases in the challenging propane dehydrogenation and by DFT calculations, we obtain a comprehensive picture of these novel catalyst materials. Their specific crystallographic structure leads to isolated Rhodium sites, which is proposed to be the decisive factor for the catalytic properties of the systems., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
18. AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration.
- Author
-
Beisaw A, Kuenne C, Guenther S, Dallmann J, Wu CC, Bentsen M, Looso M, and Stainier DYR
- Subjects
- Animals, Cells, Cultured, Myocytes, Cardiac physiology, Protein Serine-Threonine Kinases genetics, Rats, Rats, Sprague-Dawley, Sarcomeres physiology, Transcription Factor AP-1 genetics, Zebrafish, Zebrafish Proteins genetics, Chromatin metabolism, Myocytes, Cardiac metabolism, Regeneration, Sarcomeres metabolism, Transcription Factor AP-1 metabolism
- Abstract
Rationale: The adult human heart is an organ with low regenerative potential. Heart failure following acute myocardial infarction is a leading cause of death due to the inability of cardiomyocytes to proliferate and replenish lost cardiac muscle. While the zebrafish has emerged as a powerful model to study endogenous cardiac regeneration, the molecular mechanisms by which cardiomyocytes respond to damage by disassembling sarcomeres, proliferating, and repopulating the injured area remain unclear. Furthermore, we are far from understanding the regulation of the chromatin landscape and epigenetic barriers that must be overcome for cardiac regeneration to occur., Objective: To identify transcription factor regulators of the chromatin landscape, which promote cardiomyocyte regeneration in zebrafish, and investigate their function., Methods and Results: Using the Assay for Transposase-Accessible Chromatin coupled to high-throughput sequencing (ATAC-Seq), we first find that the regenerating cardiomyocyte chromatin accessibility landscape undergoes extensive changes following cryoinjury, and that activator protein-1 (AP-1) binding sites are the most highly enriched motifs in regions that gain accessibility during cardiac regeneration. Furthermore, using bioinformatic and gene expression analyses, we find that the AP-1 response in regenerating adult zebrafish cardiomyocytes is largely different from the response in adult mammalian cardiomyocytes. Using a cardiomyocyte-specific dominant negative approach, we show that blocking AP-1 function leads to defects in cardiomyocyte proliferation as well as decreased chromatin accessibility at the fbxl22 and ilk loci, which regulate sarcomere disassembly and cardiomyocyte protrusion into the injured area, respectively. We further show that overexpression of the AP-1 family members Junb and Fosl1 can promote changes in mammalian cardiomyocyte behavior in vitro., Conclusions: AP-1 transcription factors play an essential role in the cardiomyocyte response to injury by regulating chromatin accessibility changes, thereby allowing the activation of gene expression programs that promote cardiomyocyte dedifferentiation, proliferation, and protrusion into the injured area.
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.