Search

Human Puumala virus (PUUV) infections in Germany fluctuate multi-annually, following fluctuations of the bank vole population size. We applied a transformation to the annual incidence values and established a heuristic method to develop a straightforward robust model for the binary human infection risk at the district level. The classification model was powered by a machine-learning algorithm and achieved 85% sensitivity and 71% precision, despite using only three weather parameters from the previous years as inputs, namely the soil temperature in April of two years before and in September of the previous year, and the sunshine duration in September of two years before. Moreover, we introduced the PUUV Outbreak Index that quantifies the spatial synchrony of local PUUV-outbreaks, and applied it to the seven reported outbreaks in the period 2006–2021. Finally, we used the classification model to estimate the PUUV Outbreak Index, achieving 20% maximum uncertainty. [ABSTRACT FROM AUTHOR]

The fluctuation of human infections by the Puumala orthohantavirus (PUUV) in Germany has been linked to weather and phenology parameters that drive the population growth of its host species. We quantified the annual PUUV-outbreaks at the district level by binarizing the reported infections in the period 2006–2021. With these labels we trained a model based on a support vector machine classifier for predicting local outbreaks and incidence well in advance. The feature selection for the optimal model was performed by a heuristic method and identified five monthly weather variables from the previous two years plus the beech flowering intensity of the previous year. The predictive power of the optimal model was assessed by a leave-one-out cross-validation in 16 years that led to an 82.8% accuracy for the outbreak and a 0.457 coefficient of determination for the incidence. Prediction risk maps for the entire endemic area in Germany will be annually available on a freely-accessible permanent online platform of the German Environment Agency. The model correctly identified 2022 as a year with low outbreak risk, whereas its prediction for large-scale high outbreak risk in 2023 was not confirmed. [ABSTRACT FROM AUTHOR]

Anticoagulant rodenticides (ARs) are commonly used to control rodent infestations for biocidal and plant protection purposes. This can lead to AR exposure of non-target small mammals and their predators, which is known from several regions of the world. However, drivers of exposure variation are usually not known. To identify environmental drivers of AR exposure in non-targets we analyzed 331 liver samples of red foxes (Vulpes vulpes) for residues of eight ARs and used local parameters (percentage of urban area and livestock density) to test for associations to residue occurrence. 59.8% of samples collected across Germany contained at least one rodenticide, in 20.2% of cases at levels at which biological effects are suspected. Second generation anticoagulants (mainly brodifacoum and bromadiolone) occurred more often than first generation anticoagulants. Local livestock density and the percentage of urban area were good indicators for AR residue occurrence. There was a positive association between pooled ARs and brodifacoum occurrence with livestock density as well as of pooled ARs, brodifacoum and difenacoum occurrence with the percentage of urban area on administrative district level. Pig holding drove associations of livestock density to AR residue occurrence in foxes. Therefore, risk mitigation strategies should focus on areas of high pig density and on highly urbanized areas to minimize non-target risk. [ABSTRACT FROM AUTHOR]

This article reports that rapid recolonization can be a major problem for the management of overabundant populations if the removal techniques are short term. Continuous removal of individuals minimize rapid recolonization, but it could profoundly alter the population's composition and may in fact separate individuals of high quality from individuals of low quality. If residents were removed and immigration occurred quickly, immigrants would be present in the population and create a bias towards individuals of low quality, assuming that immigrants are of low quality. Trap barrier systems (TBS) were introduced to some Southeast Asian countries for rodent management. If a TBS removed mainly dispersers of low quality and left the resident population intact, the quality of residents near a TBS would be similar to rats in areas without a TBS. Researchers selected 6 experimental plots in irrigated rice monoculture. Each plot was adjacent to a main irrigation channel of 6-m width. The fumigation of burrows was thought to yield residents. Rats were fumigated and dug out of their burrows in the centre of 1 quadrant of the semicircle per trapping session in treatment plots and control plots.

Fertility control is used for the management of overabundant species. If sterilized individuals abandon their territories, fertile immigrants may invade and compromise fertility control. In southeast Asia, ricefield rats (Rattus argentiventer) can cause significant pre-harvest damage to lowland irrigated rice fields and may be a prime target for the use of fertility control. However, little is known about the behavioral response of ricefield rats to sterilization. We tested the effects of surgical and hormonal sterilization on movement patterns of female ricefield rats in rice fields in West Java, Indonesia. We found that surgically sterilized rats had the largest home ranges (1.8 &plumn; 0.1 ha), about twice the size of home ranges of hormonally sterilized rats and fertile rats. Hormonally sterilized rats tended to lose their territories--indicated by a high rate of burrow relocation--although hormonally sterilized, surgically sterilized, and fertile rats did not leave the ricefield system. We found no difference in survival rate and preference for refuge habitats between sterilized and fertile rats. Although changes in movement patterns after sterilization occurred, these changes are unlikely to affect the success of fertility control in ricefield rats negatively because sterilized rats remained in the ricefield system throughout the breeding period. [ABSTRACT FROM AUTHOR]

For the sustainable management of small mammals, fertility control may be used in the future. Little is known about what proportions of females need to be sterilized to achieve an impact on population size and what compensatory processes may act on the population level. We tested the impact of surgical sterilization of zero, 25, 50, and 75% of females on the population dynamics and demography of enclosed populations of ricefield rats (Rattus argentiventer) and damage to rice crop. Sterilizing 50% of female founders (6 of 12) decreased population size at the end of the breeding season by about 50%. We used a simulation model, based on the breeding biology of the ricefield rat in the field and in the control enclosures, to generate the expected dynamics of the enclosure populations. The results suggested that compensation occurred in the enclosures where 75% of female founders (9 of 12) had been sterilized. We detected a slight tendency for 50% higher numbers of recent uterine scars in fertile founder females in the 50% and 75% treatments versus 25% treatments and controls (P = 0.198). The primary demographic mechanism for compensation was higher survival of young rats in enclosures where 75% of females were sterilized. However, compensation only partially offset the decrease in population size. We found no conclusive evidence that the reproductive output of F[sub1] generation females was higher when large proportions of female founders were sterilized. Early in the breeding season, the per capita damage to rice plants in populations without sterilized ricefield rats was increased. Our results suggest that the sterilization of >50% of females in ricefield rat populations can reduce rat population growth and rat damage to rice crops. [ABSTRACT FROM AUTHOR]

We studied habitat selection and foraging behaviour of the house mouse (Mus domesticus) related to increasing mouse densities and depleting food resources over the breeding season. The study was conducted during the increase phase of an incipient outbreak of mice in a grain-growing area of southeastern Australia. A 3-year rotation created a mosaic of large paddocks of grain crop, pasture, and fallow. The narrow fence lines between paddocks provide an important stable habitat for the mice. We monitored population densities with live-trapping and habitat preference by measuring giving-up densities (GUD) using artificial food patches. Food patches were established in crop fields, fence lines, and pasture. Avian predation risk was assessed by daily counts of raptors. Before harvest most mice were found in the crop fields. Fewer mice were found along the fence lines and no mice were found in the pasture. After harvest, the number of mice increased along the fence line and in the pasture. Mice started to exploit pasture but only a few trays were visited. As the population densities of mice increased, they inhabited all habitats. Feeding activity in the pasture remained low due to high predation risk. Along fence lines feeding activity increased and mice exploited open and covered patches similarly. We conclude that during high densities mice experience a strong trade-off between food and safety. Vegetation along fence lines offered cover but little food. However, soon after harvest this habitat was favoured by mice. Pasture offered little food and was an extremely risky habitat because of the lack of cover. We suggest that during high densities of mice, habitat use became more opportunistic. Mice took greater risks in all habitats and within each habitat at the microhabitat level. The "Stalingrad effect" is a good descriptor of foraging decisions of mice during the progression of an incipient plague in the cereal-growing regions of southeastern Australia. [ABSTRACT FROM AUTHOR]

We used depletable food patches to determine the effect of microhabitat (mowed versus unmowed adjacent grasslands) and time (day versus night) on the foraging behavior of common voles (Microtus arvalis ). The food remaining after 12-h periods (giving-up density, GUD) measured the vole's habitat selection under predation risk. In accord with several other rodent species and the effects of avian predators, voles had significantly lower GUDs in the unmowed than mowed portion of the grassland. GUDs in patches along the border between adjacent habitats were more similar to the risky mowed grassland than the safe unmowed grass. Time interacted strongly with microhabitat. In the mowed grass, voles had significantly higher GUDs at night than day. Whereas in the unmowed grass, GUDs were significantly higher during the day than night. Vole GUDs did not vary with time along the boundary. This suggests that predators are more abundant or effective in the mowed grass at night (owls?), and in the unmowed grass during the day (weasels?). In terms of predation risk, the voles perceived the mowed grass at night as the riskiest and the unmowed grass at night as the safest. Voles may have difficulties assessing resources under high predation risk: GUDs among patches were well equalized in the unmowed microhabitat whereas in the mowed grass only day GUDs did not vary significantly among patches. We linked these results to the vole's day-night-activity and life span. For the 533 voles live-trapped at the study area, the ratio of day versus night captures for each individual served as an activity index and the span between first and last capture measured minimum life span. In accord with higher GUDs at night, very few individuals behaved selectively towards the night, but individual life expectancy increased with temporal opportunism. Microhabitat differences in GUDs reflect short-term strategies of predator avoidance and the trapping data reflect long-term patterns of anti-predator behavior. [ABSTRACT FROM AUTHOR]

Simple Summary: Bait-based fertility control could contribute to rodent pest management. Bait containing 4-vinylcyclohexene diepoxide (VCD) and triptolide (TP), registered as ContraPest®, was delivered to male common voles to assess the effects on reproductive structures and residues in the liver and testes. There were no effects or inconclusive effects for most reproductive parameters considered. However, there was an increase in sperm defects in voles treated for 14/28 days and fewer normal sperm cells in voles treated for 28 days. There were no TP residues in the testes, few and low TP residues and no VCD residues in the liver tissue. Treatments with VCD + TP seemed to have minor effects on male reproductive organs. Some rodent species cause significant damage to agriculture and forestry, and some can transmit pathogens to humans and livestock. The common vole (Microtus arvalis) is widespread in Europe, and its population outbreaks have resulted in massive crop loss. Bait-based fertility control could contribute to rodent pest management. Bait containing 4-vinylcyclohexene diepoxide (VCD) and triptolide (TP), registered as ContraPest®, was delivered to male common voles for 14 or 28 consecutive days. The effects on reproductive structures and residues in the liver and testes were assessed. There was no effect on testis weight, sperm viability, sperm motility and oxidative stress in sperm cells. Results regarding the mitochondrial membrane potential of sperm, DNA fragmentation and progressively motile sperm cells were inconclusive. However, there was an increase in morphological sperm defects in voles treated for 14/28 days and fewer normal sperm cells in voles treated for 28 days. There were no TP residues in the testes, few and low TP residues and no VCD residues in liver tissues, making considerable secondary exposure to non-target species unlikely. Treatments with VCD + TP seemed to have minor effects on the reproductive organs of males. Further studies should evaluate the effect of VCD + TP on females and on the reproductive success of common voles and other pest rodent species. [ABSTRACT FROM AUTHOR]

Simple Summary: Hair tubes provide a non-invasive method for determining the presence and activity of small mammals by evaluating hair left in hair tubes. Data can be converted into activity indices. In this study, a specially adapted program was developed to semi-automatically determine hair density as a proxy of activity. Adhesive tape with hair from a field experiment was processed, scanned, and analyzed by the program to obtain a quantitative measure of hair density. The validation of hair tubes with wildlife cameras in the field showed a moderate-to-strong positive correlation between hair tube data and recorded rodents. The program is simple but effective and does not require a large amount of deep learning data. Due to its reduced complexity, it facilitates error detection and fine-tuning. The use of hair tubes in combination with this program should provide an easy-to-use, non-invasive method to determine small mammal activity. Activity indices are used to determine the presence and activity of small mammals, such as the hair index derived from the use of hair tubes. In contrast to trapping animals, hair tubes are non-invasive and less labor-intensive, and appear to be a suitable alternative in appropriate settings. We developed a method to calculate hair density semi-automatically. In addition, hair tube data were validated with field data using wildlife cameras for the small mammal community in grassland, wheat crops, and hedges to assess how well data from hair tubes match data from wildlife cameras. Adhesive tape with hair from hair tubes was processed and scanned. The resulting images were analyzed using a newly developed computer program that enables background and adhesive tape to be automatically distinguished from hair, providing a quantitative measure of hair density. Based on validation with wildlife cameras, hair tubes seem to be a suitable tool to estimate small mammal activity at the community level in several habitats. There was a moderate-to-strong positive correlation of the hair tube index with the sum of voles and Apodemus individuals (activity index) recorded in grasslands (Spearman's correlation coefficient 0.43), hedges (0.79), and wheat (0.44). The newly developed computer program allows the automatic calculation of hair density, making it easier to assess the activity of small mammals. [ABSTRACT FROM AUTHOR]

Balancing foraging gain and predation risk is a fundamental trade-off in the life of animals. Individual strategies to acquire, process, store and use information to solve cognitive tasks are likely to affect speed and flexibility of learning, and ecologically relevant decisions regarding foraging and predation risk. Theory suggests a functional link between individual variation in cognitive style and behaviour (animal personality) via speed-accuracy and risk-reward trade-offs. We tested whether cognitive style and personality affect risk-reward trade-off decisions posed by foraging and predation risk. We exposed 21 bank voles (Myodes glareolus) that were bold, fast learning and inflexible and 18 voles that were shy, slow learning and flexible to outdoor enclosures with different risk levels at two food patches. We quantified individual food patch exploitation, foraging and vigilance behaviour. Although both types responded to risk, fast animals increasingly exploited both food patches, gaining access to more food and spending less time searching and exercising vigilance. Slow animals progressively avoided high-risk areas, concentrating foraging effort in the low-risk one, and devoting >50% of visit to vigilance. These patterns indicate that individual differences in cognitive style/personality are reflected in foraging and anti-predator decisions that underlie the individual risk-reward bias. [ABSTRACT FROM AUTHOR]

Background: Understanding the ecological processes that are involved in the transmission of zoonotic pathogens by small mammals may aid adequate and effective management measures. Few attempts have been made to analyze the ecological aspects that influence pathogen infection in small mammals in livestock production systems. We describe the infection of small mammals with Leptospira spp., Brucella spp., Trichinella spp. and Cysticercus fasciolaris and assess the related intrinsic and extrinsic factors in livestock production systems in central Argentina at the small mammal community, population and individual levels. Methodology/Principal findings: Ten pig farms and eight dairy farms were studied by removal trapping of small mammals from 2008 to 2011. Each farm was sampled seasonally over the course of one year with cage and Sherman live traps. The 505 small mammals captured (14,359 trap-nights) included three introduced murine rodents, four native rodents and two opossums. Leptospira spp., anti-Brucella spp. antibodies and Trichinella spp. were found in the three murine rodents and both opossums. Rattus norvegicus was also infected with C. fasciolaris; Akodon azarae and Oligoryzomys flavescens with Leptospira spp.; anti-Brucella spp. antibodies were found in A. azarae. Two or more pathogens occurred simultaneously on 89% of the farms, and each pathogen was found on at least 50% of the farms. Pathogen infections increased with host abundance. Infection by Leptospira spp. also increased with precipitation and during warm seasons. The occurrence of anti-Brucella spp. antibodies was higher on dairy farms and during the winter and summer. The host abundances limit values, from which farms are expected to be free of the studied pathogens, are reported. Conclusions/Significance: Murine rodents maintain pathogens within farms, whereas other native species are likely dispersing pathogens among farms. Hence, we recommend preventing and controlling murines in farm dwellings and isolating farms from their surroundings to avoid contact with other wild mammals. [ABSTRACT FROM AUTHOR]

Simple Summary: Trapping particular small mammal species is frequently used for scientific purposes but unnecessary bycatch can occur. Live trapping conducted over the last decade in Germany using Ugglan multiple capture traps in grassland, forest and margin habitats revealed about 30% bycatch when target species were common voles (Microtus arvalis) in grassland and common voles and bank voles (Clethrionomys glareolus) in margins and forests. This was more pronounced in spring and along margins. Species mentioned on the early warning list according to the Red List Germany were higher in numbers and proportion in spring and in grassland. The results of the study will help to avoid periods with enhanced presence of bycatch including endangered species (if the purpose of the study allows) or to pay particular attention in certain seasons and habitats when the occurrence of bycatch is most likely. Trapping small mammals is frequently used to study the dynamics, demography, behavior and presence of pathogens. When only particular small mammal species are in the focus of interest, all other species are unnecessary bycatch. We analyzed data from extensive live trapping campaigns conducted over the last decade in Germany, following a consistent standard trapping protocol that resulted in about 18,500 captures of small mammals. Animals were trapped with Ugglan multiple capture traps in grassland, forest and margin habitat. Trap success and the proportion of bycatch were about 30% when target species were common voles (Microtus arvalis) in grassland and common voles and bank voles (Clethrionomys glareolus) in margins and forests. This was more pronounced in spring and along margins. Species mentioned in the early warning list according to the Red List Germany were higher in numbers and proportion in spring and in grassland. The results will help to avoid periods with enhanced presence of bycatch, including endangered species (if the purpose of the study allows) or to pay particular attention in certain seasons and habitats when the occurrence of bycatch is most likely. [ABSTRACT FROM AUTHOR]

Leptospirosis is a neglected zoonotic disease and one of the leading causes of zoonotic morbidity and mortality, particularly in resource-poor settings. Sri Lanka has one of the highest disease burdens worldwide, with occasional endemic leptospirosis outbreaks (2008, 2011). Rodents are considered the main wildlife reservoir, but due to a scarcity of studies it is unclear which particular species contributes to bacterial transmission and reservoir maintenance in this multi-host multi-parasite system. Several rodent species act as agricultural pests both in rice fields and in food storage facilities. To unravel the interactions among the small mammal communities, pathogenic Leptospira spp. and human transmission pathways, we collected animals from smallholder food storage facilities, where contact between humans and small mammals is most likely, and screened kidney tissue samples for Leptospira spp. using PCR. Samples were collected in three climatic zones along a rainfall gradient. Pathogenic Leptospira spp. were detected in small mammal communities in 37 (74%) out of 50 sampled farms and 61 (12%) out of 500 collected individuals were infected. The small mammal community was comprised of Rattus rattus (87.6%), Suncus shrews (8.8%), Bandicota spp. (2.8%) and Mus booduga (0.8%). Three pathogenic Leptospira spp. were identified, L. borgpetersenii (n = 34), L. interrogans (n = 15), and L. kirschneri (n = 1). Suncus shrews were commonly infected (32%), followed by B. indica (23%) and R. rattus (10%). L. borgpetersenii strains similar to strains previously extracted from human clinal samples in Sri Lanka were detected in R. rattus and Suncus shrews. L. interrogans was observed in R. rattus only. A single L. kirschneri infection was found in M. booduga. The presence of human pathogenic Leptospira species in an agricultural pest rodent (R. rattus) and in commensal shrews (Suncus) calls for management of these species in commensal settings. Further investigation of the interplay between pathogen and reservoir population dynamics, overlap in geographic range and the extent of spill-over to humans in and around rural settlements is required to identify optimal management approaches. Author summary: Leptospirosis is a bacterial disease which affects livestock and humans, causing symptoms ranging from asymptomatic to severe morbidity and even mortality in Sri Lanka. The bacterium is known to survive well outside the hosts under favourable conditions such as in a rice-ecosystem. In low-income situations the wellbeing of families can suffer significantly if the principal breadwinner is affected or their livestock turns out sick. In this study rodent host species were sampled in and around smallholder rice storage structures in Sri Lanka with the aim of building knowledge on the wildlife reservoir and potential spill-over events. Leptospira were commonly detected in the black rat and in commensal shrew species. Genetic analysis demonstrated that Leptospira isolates found in these small mammal species were similar to those already isolated from human clinical cases from Sri Lanka. In a biodiversity hotspot such as Sri Lanka, this information can be used to design and implement management strategies which focus on particular host species. [ABSTRACT FROM AUTHOR]

Background: Ixodid ticks are important vectors for zoonotic pathogens, with Ixodes ricinus being the most important in Europe. Rodents are hosts of immature life stages of I. ricinus ticks and are considered main reservoirs for tick-borne pathogens, e.g. Borrelia burgdorferi. The aim of this study was to analyse the prevalence as well as genospecies and sequence type (ST) diversity of Borrelia burgdorferi sensu lato in ticks and small mammals from central Germany and to elaborate on the influence of environmental and/or individual host and vector factors on Borrelia prevalence. Methods: After species identification, 1167 small mammal skin samples and 1094 ticks from vegetation were screened by B. burgdorferi sensu lato real-time polymerase chain reaction, and positive samples were characterized by multilocus sequence typing. Generalized linear (mixed) models were used to estimate how seasonality, small mammal species/tick life stage and habitat affect individual infection status. Results: In total, 10 small mammal species and three tick species, Ixodes ricinus, Ixodes inopinatus (both considered members of the I. ricinus complex) and Dermacentor reticulatus, were investigated. Borrelia DNA was detected in eight host species, i.e. the striped field mouse (Apodemus agrarius), the yellow-necked field mouse (Apodemus flavicollis), the wood mouse (Apodemus sylvaticus), the water vole (Arvicola amphibius), the bank vole (Clethrionomys glareolus), the field vole (Microtus agrestis), the common vole (Microtus arvalis), and the common shrew (Sorex araneus). Two species were Borrelia negative, the greater white-toothed shrew (Crocidura russula) and the pygmy shrew (Sorex minutus). The average prevalence was 6.2%, with two genospecies detected, Borrelia afzelii and Borrelia garinii, and at least three STs that had not been previously reported in small mammals. Borrelia prevalence in small mammals did not differ between seasons. Six genospecies of Borrelia—Borrelia afzelii, Borrelia valaisiana, Borrelia garinii, Borrelia lusitaniae, Borrelia spielmanii, and Borrelia burgdorferi sensu stricto—and 25 STs of Borrelia, of which 12 have not been previously described at all and five have not been previously reported in Germany, were detected in 13% of I. ricinus complex ticks. Prevalence was highest in adult females (25.3%) and lowest in nymphs (11.4%). Prevalence was significantly higher in ticks from grassland (16.8%) compared to forests (11.4%). Conclusions: The high level of small mammal diversity in this region of Germany seems to be reflected in a wide variety of genospecies and STs of B. burgdorferi. [ABSTRACT FROM AUTHOR]

Well-known examples of high-amplitude, large-scale fluctuations of small-mammal populations include vole cycles in the boreal zone of Eurasia, lemming cycles in the high-arctic tundra of Eurasia and North America, snowshoe hare cycles in the boreal zone of North America, and outbreaks of house mice in southeastern Australia. We synthesize the recent knowledge of three key aspects of these animals' population cycles: (1) periodicity, amplitude, and asphaltite synchrony; (2) reproduction and survival; and (3) underlying mechanisms. Survival rather than reproductive rate appears to drive rates of population increase during these fluctuations. Food limitation may stop increases of cyclic vole; lemming, and hare populations, whereas the decline from peak numbers is caused by predation mortality. In house mice, without coevolved predators, outbreaks may he driven by rainfall, food supply, and disease. [ABSTRACT FROM AUTHOR]

Background: Giardiasis is an important gastrointestinal parasitic disease in humans and other mammals caused by the protozoan Giardia duodenalis. This species complex is represented by genetically distinct groups (assemblages A-H) with varying zoonotic potential and host preferences. Wild rodents can harbor potentially zoonotic assemblages A and B, and the rodent-specific assemblage G. Other Giardia spp. found in these animals are Giardia muris and Giardia microti. For the latter, only limited information on genetic typing is available. It has been speculated that wild rodents might represent an important reservoir for parasites causing human giardiasis. The aim of this study was to investigate the occurrence and distribution of Giardia spp. and assemblage types in wild rodents from different study sites in Germany. Results: Screening of 577 wild rodents of the genera Apodemus, Microtus and Myodes, sampled at eleven study sites in Germany, revealed a high overall Giardia prevalence. Giardia species determination at the SSU rDNA gene locus revealed that Apodemus mice, depending on species, were predominantly infected with one of two distinct G. muris sequence types. Giardia microti was the predominant parasite species found in voles of the genera Microtus and Myodes. Only a few animals were positive for potentially zoonotic G. duodenalis. Subtyping at the betagiardin (bg) and glutamine dehydrogenase (gdh) genes strongly supported the existence of different phylogenetic subgroups of G. microti that are preferentially harbored by distinct host species. Conclusions: The present study highlights the preference of G. muris for Apodemus, and G. microti for Microtus and Myodes hosts and argues for a very low prevalence of zoonotic G. duodenalis assemblages in wild rodents in Germany. It also provides evidence that G. muris and G. microti subdivide into several phylogenetically distinguishable subgroups, each of which appears to be preferentially harbored by species of a particular rodent host genus. Finally, the study expands the database of sequences relevant for sequence typing of G. muris and G. microti isolates which will greatly help future analyses of these parasites’ population structure. [ABSTRACT FROM AUTHOR]

The transmission of wildlife zoonoses to humans depends, amongst others, on complex interactions of host population ecology and pathogen dynamics within host populations. In Europe, the Puumala virus (PUUV) causes nephropathia epidemica in humans. In this study we investigated complex interrelations within the epidemic system of PUUV and its rodent host, the bank vole (Myodes glareolus). We suggest that beech fructification and bank vole abundance are both decisive factors affecting human PUUV infections. While rodent host dynamics are expected to be directly linked to human PUUV infections, beech fructification is a rather indirect predictor by serving as food source for PUUV rodent hosts. Furthermore, we examined the dependence of bank vole abundance on beech fructification. We analysed a 12-year (2001-2012) time series of the parameters: beech fructification (as food resource for the PUUV host), bank vole abundance and human incidences from 7 Federal States of Germany. For the first time, we could show the direct interrelation between these three parameters involved in human PUUV epidemics and we were able to demonstrate on a large scale that human PUUV infections are highly correlated with bank vole abundance in the present year, as well as beech fructification in the previous year. By using beech fructification and bank vole abundance as predictors in one model we significantly improved the degree of explanation of human PUUV incidence. Federal State was included as random factor because human PUUV incidence varies considerably among states. Surprisingly, the effect of rodent abundance on human PUUV infections is less strong compared to the indirect effect of beech fructification. Our findings are useful to facilitate the development of predictive models for host population dynamics and the related PUUV infection risk for humans and can be used for plant protection and human health protection purposes. [ABSTRACT FROM AUTHOR]

To investigate 2,017 cases of hantavirus disease in Germany, we compared 38 new patient-derived Puumala virus RNA sequences identified in 2010 with bank vole-derived small segment RNA sequences. The epidemic process was driven by outbreaks of 6 Puumala virus clades comprising strains of human and vole origin. Each clade corresponded to a different outbreak region. [ABSTRACT FROM AUTHOR]

Simple Summary: Leptospirosis is a worldwide emerging zoonotic disease. Clinical symptoms in humans range from mild flu-like symptoms to severe clinical disease with kidney failure and multiple organ dysfunction. Infections occur after contact with infected animals or through water and soil contaminated by urine of infected animals. Cases are mostly linked to occupational risk groups such as field workers or farmers, but contact with pets and recreational activities like fresh water sports also lead to a higher exposure risk. This study was conducted to evaluate the prevalence and species distribution of Leptospira in bank voles in Germany. We analyzed the DNA of 1817 kidney samples and detected a mean prevalence of 7.5% with the following pathogenic Leptospira species: L. interrogans, L. kirschneri, and L. borgpetersenii. The individual infection risk in bank voles depended on season, body weight and abundance of bank voles. Even if leptospirosis case numbers in Germany are low, our study shows that pathogenic Leptospira spp. are present and a potential source for human infection, which should be recognized by clinicians and veterinarians. Leptospirosis is a worldwide zoonotic disease with more than 1 million human cases annually. Infections are associated with direct contact to infected animals or indirect contact to contaminated water or soil. As not much is known about the prevalence and host specificity of Leptospira spp. in bank voles (Clethrionomys glareolus), our study aimed to evaluate Leptospira spp. prevalence and genomospecies distribution as well as the influence of season, host abundance and individual characteristics on the Leptospira prevalence. Bank voles, which are abundant and widely distributed in forest habitats, were collected in the years 2018 to 2020 in North-West Germany, covering parts of North Rhine-Westphalia and Lower Saxony. The DNA of 1817 kidney samples was analyzed by real-time PCR targeting the lipl32 gene. Positive samples were further analyzed by targeting the secY gene to determine Leptospira genomospecies and multilocus sequence typing (MLST) to determine the sequence type (ST). The overall prevalence was 7.5% (95% confidence interval: 6.4–8.9). Leptospira interrogans (83.3%), L. kirschneri (11.5%) and L. borgpetersenii (5.2%) were detected in bank voles. Increasing body weight as a proxy for age increased the individual infection probability. Only in years with high bank vole abundance was this probability significantly higher in males than in females. Even if case numbers of human leptospirosis in Germany are low, our study shows that pathogenic Leptospira spp. are present and thus a persisting potential source for human infection. [ABSTRACT FROM AUTHOR]

Tula orthohantavirus (TULV) is a rodent-borne hantavirus with broad geographical distribution in Europe. Its major reservoir is the common vole (Microtus arvalis), but TULV has also been detected in closely related vole species. Given the large distributional range and high amplitude population dynamics of common voles, this host–pathogen complex presents an ideal system to study the complex mechanisms of pathogen transmission in a wild rodent reservoir. We investigated the dynamics of TULV prevalence and the subsequent potential effects on the molecular evolution of TULV in common voles of the Central evolutionary lineage. Rodents were trapped for three years in four regions of Germany and samples were analyzed for the presence of TULV-reactive antibodies and TULV RNA with subsequent sequence determination. The results show that individual (sex) and population-level factors (abundance) of hosts were significant predictors of local TULV dynamics. At the large geographic scale, different phylogenetic TULV clades and an overall isolation-by-distance pattern in virus sequences were detected, while at the small scale (<4 km) this depended on the study area. In combination with an overall delayed density dependence, our results highlight that frequent, localized bottleneck events for the common vole and TULV do occur and can be offset by local recolonization dynamics. [ABSTRACT FROM AUTHOR]

A letter to the editor about hemorrhagic fever with renal syndrome caused by hantaviruses in Germany is presented.

Rats are a reservoir of human- and livestock-associated methicillin-resistant Staphylococcus aureus (MRSA). However, the composition of the natural S. aureus population in wild and laboratory rats is largely unknown. Here, 144 nasal S. aureus isolates from free-living wild rats, captive wild rats and laboratory rats were genotyped and profiled for antibiotic resistances and human-specific virulence genes. The nasal S. aureus carriage rate was higher among wild rats (23.4%) than laboratory rats (12.3%). Free-living wild rats were primarily colonized with isolates of clonal complex (CC) 49 and CC130 and maintained these strains even in husbandry. Moreover, upon livestock contact, CC398 isolates were acquired. In contrast, laboratory rats were colonized with many different S. aureus lineages—many of which are commonly found in humans. Five captive wild rats were colonized with CC398-MRSA. Moreover, a single CC30-MRSA and two CC130-MRSA were detected in free-living or captive wild rats. Rat-derived S. aureus isolates rarely harbored the phage-carried immune evasion gene cluster or superantigen genes, suggesting long-term adaptation to their host. Taken together, our study revealed a natural S. aureus population in wild rats, as well as a colonization pressure on wild and laboratory rats by exposure to livestock- and human-associated S. aureus, respectively. [ABSTRACT FROM AUTHOR]

Cowpox virus (CPXV) belongs to the genus Orthopoxvirus in the Poxviridae family and is endemic in western Eurasia. Based on seroprevalence studies in different voles from continental Europe and UK, voles are suspected to be the major reservoir host. Recently, a CPXV was isolated from a bank vole (Myodes glareolus) in Germany that showed a high genetic similarity to another isolate originating from a Cotton-top tamarin (Saguinus oedipus). Here we characterize this first bank vole-derived CPXV isolate in comparison to the related tamarin-derived isolate. Both isolates grouped genetically within the provisionally called CPXV-like 3 clade. Previous phylogenetic analysis indicated that CPXV is polyphyletic and CPXV-like 3 clade represents probably a different species if categorized by the rules used for other orthopoxviruses. Experimental infection studies with bank voles, common voles (Microtusarvalis) and Wistar rats showed very clear differences. The bank vole isolate was avirulent in both common voles and Wistar rats with seroconversion seen only in the rats. In contrast, inoculated bank voles exhibited viral shedding and seroconversion for both tested CPXV isolates. In addition, bank voles infected with the tamarin-derived isolate experienced a marked weight loss. Our findings allow for the conclusion that CPXV isolates might differ in their replication capacity in different vole species and rats depending on their original host. Moreover, the results indicate host-specific differences concerning CPXV-specific virulence. Further experiments are needed to identify individual virulence and host factors involved in the susceptibility and outcome of CPXV-infections in the different reservoir hosts. [ABSTRACT FROM AUTHOR]

Cowpox virus (CPXV) is a zoonotic orthopoxvirus (OPV) that infects a wide range of mammals. CPXV-specific DNA and antibodies were detected in different vole species, such as common voles (Microtus arvalis) and bank voles (Myodes glareolus). Therefore, voles are the putative main reservoir host of CPXV. However, CPXV was up to now only isolated from common voles. Here we report the detection and isolation of a bank vole-derived CPXV strain (GerMygEK 938/17) resulting from a large-scale screening of bank voles collected in Thuringia, Germany, during 2017 and 2018. Phylogenetic analysis using the complete viral genome sequence indicated a high similarity of the novel strain to CPXV clade 3 and to OPV "Abatino" but also to Ectromeliavirus (ECTV) strains. Phenotypic characterization of CPXV GerMygEK 938/17 using inoculation of embryonated chicken eggs displayed hemorrhagic pock lesions on the chorioallantoic membrane that are typical for CPXV but not for ECTV. CPXV GerMygEK 938/17 replicated in vole-derived kidney cell lines but at lower level than on Vero76 cell line. In conclusion, the first bank vole-derived CPXV isolate provides new insights into the genetic variability of CPXV in the putative reservoir host and is a valuable tool for further studies about CPXV-host interaction and molecular evolution of OPV. [ABSTRACT FROM AUTHOR]

Zoonotic diseases are challenging to study from the ecological point of view as, broadly speaking, datasets tend to be either detailed on a small spatial extent, or coarse on a large spatial extent. Also, there are many ways to assess zoonotic disease transmission systems, from pathogens to hosts to humans. We explore the complementarity of datasets considering the pathogen in its host, the host and human cases in the context of Puumala orthohantavirus infection in Germany. We selected relevant environmental predictors using a conceptual framework based on resource-based habitats. This framework assesses the functions, and associated environmental resources of the pathogen and associated host. A resource-based habitat framework supports variable selection and result interpretation. Multiplying 'keyholes' to view a zoonotic disease transmission system is valuable, but requires a strong conceptual framework to select and interpret environmental explanatory variables. This study highlights the usefulness of a structured, ecology-based approach to study drivers of zoonotic diseases at the level of virus, host, and human - not only for PUUV but also for other zoonotic pathogens. Our results show that human disease cases are best explained by a combination of variables related to zoonotic pathogen circulation and human exposure. [ABSTRACT FROM AUTHOR]