103 results on '"Jean Wang"'
Search Results
2. A student-led curriculum framework for homeless and vulnerably housed populations
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Syeda Shanza Hashmi, Ammar Saad, Caroline Leps, Jamie Gillies-Podgorecki, Brandon Feeney, Courtney Hardy, Nicole Falzone, Doug Archibald, Tuan Hoang, Andrew Bond, Jean Wang, Qasem Alkhateeb, Danielle Penney, Amanda DiFalco, and Kevin Pottie
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Curricular framework ,CanMeds ,Homeless and vulnerably housed populations ,Social accountability ,Health equity ,Special aspects of education ,LC8-6691 ,Medicine - Abstract
Abstract Background Medical student demands for competency based homeless health education is increasing. Indeed, humans living homeless is a treatable health and social emergency. This innovation report outlines the initial development of an education framework for homeless health. Methods A medical student task force and educators conducted a mixed method study, including a scoping review of homeless health curriculum and competencies, a cross-country survey of medical students, and unique clinical guidelines. The task force collaborated with persons with lived experience and clinical guideline developers from the Homeless Health Research Network. The students presented at the Toronto Homeless Health Summit and refined the framework with feedback from homeless health experts. Results The main outcome was an evidence-based Homeless Health Curriculum Framework. It uses seven core competencies; with communication, advocacy, leadership, and upstream approaches playing the strongest roles. The framework integrated the new clinical guideline (housing, income assistance, case management and addiction). In addition, it identified approaches to support mental health care with trauma informed and patient centered care. It identified public health values, clinical objectives, and case studies. The framework aims to inform the design, delivery, service learning and evaluation for medical school curriculum. Conclusions This student-led curriculum framework can support the design, implementation, delivery and evaluation of homeless health within the undergraduate medical curriculum. The framework can lay the foundation for new doctors, research and development; support consistency across programs; and support the creation of national learning and evaluation tools.
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- 2020
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3. An Argument for Amphetamine-Induced Hallucinations in an Invertebrate
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Anne H. Lee, Cindy L. Brandon, Jean Wang, and William N. Frost
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hallucinations ,invertebrate ,Tritonia ,amphetamine ,mollusk ,Physiology ,QP1-981 - Abstract
Hallucinations – compelling perceptions of stimuli that aren’t really there – occur in many psychiatric and neurological disorders, and are triggered by certain drugs of abuse. Despite their clinical importance, the neuronal mechanisms giving rise to hallucinations are poorly understood, in large part due to the absence of animal models in which they can be induced, confirmed to be endogenously generated, and objectively analyzed. In humans, amphetamine (AMPH) and related psychostimulants taken in large or repeated doses can induce hallucinations. Here we present evidence for such phenomena in the marine mollusk Tritonia diomedea. Animals injected with AMPH were found to sporadically launch spontaneous escape swims in the absence of eliciting stimuli. Deafferented isolated brains exposed to AMPH, where real stimuli could play no role, generated sporadic, spontaneous swim motor programs. A neurophysiological search of the swim network traced the origin of these drug-induced spontaneous motor programs to spontaneous bursts of firing in the S-cells, the CNS afferent neurons that normally inform the animal of skin contact with its predators and trigger the animal’s escape swim. Further investigation identified AMPH-induced enhanced excitability and plateau potential properties in the S-cells. Taken together, these observations support an argument that Tritonia’s spontaneous AMPH-induced swims are triggered by false perceptions of predator contact – i.e., hallucinations—and illuminate potential cellular mechanisms for such phenomena.
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- 2018
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4. Watching a memory form—VSD imaging reveals a novel memory mechanism
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Evan S. Hill, Sunil K. Vasireddi, Jean Wang, Angela M. Bruno, and William N. Frost
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invertebrate ,learning ,neuronal allocation ,neuronal network ,synaptic plasticity ,voltage-sensitive dye ,Biology (General) ,QH301-705.5 - Abstract
Studies of the mechanisms underlying memory formation have largely focused on the synapse. However, recent evidence suggests that additional, non-synaptic, mechanisms also play important roles in this process. We recently described a novel memory mechanism whereby a particular class of neurons was recruited into the Tritonia escape swim network with sensitization, a non-associative form of learning. Neurons that in the naïve state were loosely-affiliated with the network were rapidly recruited in, transitioning from variably bursting (VB) to reliably bursting (RB). Even after the memory had faded some new neurons remained, and some original members had left, leaving the network in an altered state. Further, we identified a candidate cellular mechanism underlying these network changes. Our study supports the view that brain networks may have surprisingly fluid functional structures and adds to the growing body of evidence that non-synaptic mechanisms often operate synergistically with changes at the synapse to mediate memory formation.
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- 2016
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5. Cell surface profiling using high-throughput flow cytometry: a platform for biomarker discovery and analysis of cellular heterogeneity.
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Craig A Gedye, Ali Hussain, Joshua Paterson, Alannah Smrke, Harleen Saini, Danylo Sirskyj, Keira Pereira, Nazleen Lobo, Jocelyn Stewart, Christopher Go, Jenny Ho, Mauricio Medrano, Elzbieta Hyatt, Julie Yuan, Stevan Lauriault, Mona Meyer, Maria Kondratyev, Twan van den Beucken, Michael Jewett, Peter Dirks, Cynthia J Guidos, Jayne Danska, Jean Wang, Bradly Wouters, Benjamin Neel, Robert Rottapel, and Laurie E Ailles
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Medicine ,Science - Abstract
Cell surface proteins have a wide range of biological functions, and are often used as lineage-specific markers. Antibodies that recognize cell surface antigens are widely used as research tools, diagnostic markers, and even therapeutic agents. The ability to obtain broad cell surface protein profiles would thus be of great value in a wide range of fields. There are however currently few available methods for high-throughput analysis of large numbers of cell surface proteins. We describe here a high-throughput flow cytometry (HT-FC) platform for rapid analysis of 363 cell surface antigens. Here we demonstrate that HT-FC provides reproducible results, and use the platform to identify cell surface antigens that are influenced by common cell preparation methods. We show that multiple populations within complex samples such as primary tumors can be simultaneously analyzed by co-staining of cells with lineage-specific antibodies, allowing unprecedented depth of analysis of heterogeneous cell populations. Furthermore, standard informatics methods can be used to visualize, cluster and downsample HT-FC data to reveal novel signatures and biomarkers. We show that the cell surface profile provides sufficient molecular information to classify samples from different cancers and tissue types into biologically relevant clusters using unsupervised hierarchical clustering. Finally, we describe the identification of a candidate lineage marker and its subsequent validation. In summary, HT-FC combines the advantages of a high-throughput screen with a detection method that is sensitive, quantitative, highly reproducible, and allows in-depth analysis of heterogeneous samples. The use of commercially available antibodies means that high quality reagents are immediately available for follow-up studies. HT-FC has a wide range of applications, including biomarker discovery, molecular classification of cancers, or identification of novel lineage specific or stem cell markers.
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- 2014
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6. Evidence of gene-environment interactions between common breast cancer susceptibility loci and established environmental risk factors.
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Stefan Nickels, Thérèse Truong, Rebecca Hein, Kristen Stevens, Katharina Buck, Sabine Behrens, Ursula Eilber, Martina Schmidt, Lothar Häberle, Alina Vrieling, Mia Gaudet, Jonine Figueroa, Nils Schoof, Amanda B Spurdle, Anja Rudolph, Peter A Fasching, John L Hopper, Enes Makalic, Daniel F Schmidt, Melissa C Southey, Matthias W Beckmann, Arif B Ekici, Olivia Fletcher, Lorna Gibson, Isabel dos Santos Silva, Julian Peto, Manjeet K Humphreys, Jean Wang, Emilie Cordina-Duverger, Florence Menegaux, Børge G Nordestgaard, Stig E Bojesen, Charlotte Lanng, Hoda Anton-Culver, Argyrios Ziogas, Leslie Bernstein, Christina A Clarke, Hermann Brenner, Heiko Müller, Volker Arndt, Christa Stegmaier, Hiltrud Brauch, Thomas Brüning, Volker Harth, Genica Network, Arto Mannermaa, Vesa Kataja, Veli-Matti Kosma, Jaana M Hartikainen, kConFab, AOCS Management Group, Diether Lambrechts, Dominiek Smeets, Patrick Neven, Robert Paridaens, Dieter Flesch-Janys, Nadia Obi, Shan Wang-Gohrke, Fergus J Couch, Janet E Olson, Celine M Vachon, Graham G Giles, Gianluca Severi, Laura Baglietto, Kenneth Offit, Esther M John, Alexander Miron, Irene L Andrulis, Julia A Knight, Gord Glendon, Anna Marie Mulligan, Stephen J Chanock, Jolanta Lissowska, Jianjun Liu, Angela Cox, Helen Cramp, Dan Connley, Sabapathy Balasubramanian, Alison M Dunning, Mitul Shah, Amy Trentham-Dietz, Polly Newcomb, Linda Titus, Kathleen Egan, Elizabeth K Cahoon, Preetha Rajaraman, Alice J Sigurdson, Michele M Doody, Pascal Guénel, Paul D P Pharoah, Marjanka K Schmidt, Per Hall, Doug F Easton, Montserrat Garcia-Closas, Roger L Milne, and Jenny Chang-Claude
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Genetics ,QH426-470 - Abstract
Various common genetic susceptibility loci have been identified for breast cancer; however, it is unclear how they combine with lifestyle/environmental risk factors to influence risk. We undertook an international collaborative study to assess gene-environment interaction for risk of breast cancer. Data from 24 studies of the Breast Cancer Association Consortium were pooled. Using up to 34,793 invasive breast cancers and 41,099 controls, we examined whether the relative risks associated with 23 single nucleotide polymorphisms were modified by 10 established environmental risk factors (age at menarche, parity, breastfeeding, body mass index, height, oral contraceptive use, menopausal hormone therapy use, alcohol consumption, cigarette smoking, physical activity) in women of European ancestry. We used logistic regression models stratified by study and adjusted for age and performed likelihood ratio tests to assess gene-environment interactions. All statistical tests were two-sided. We replicated previously reported potential interactions between LSP1-rs3817198 and parity (Pinteraction = 2.4 × 10(-6)) and between CASP8-rs17468277 and alcohol consumption (Pinteraction = 3.1 × 10(-4)). Overall, the per-allele odds ratio (95% confidence interval) for LSP1-rs3817198 was 1.08 (1.01-1.16) in nulliparous women and ranged from 1.03 (0.96-1.10) in parous women with one birth to 1.26 (1.16-1.37) in women with at least four births. For CASP8-rs17468277, the per-allele OR was 0.91 (0.85-0.98) in those with an alcohol intake of
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- 2013
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7. Variable neuronal participation in stereotypic motor programs.
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Evan S Hill, Sunil K Vasireddi, Angela M Bruno, Jean Wang, and William N Frost
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Medicine ,Science - Abstract
To what extent are motor networks underlying rhythmic behaviors rigidly hard-wired versus fluid and dynamic entities? Do the members of motor networks change from moment-to-moment or from motor program episode-to-episode? These are questions that can only be addressed in systems where it is possible to monitor the spiking activity of networks of neurons during the production of motor programs. We used large-scale voltage-sensitive dye (VSD) imaging followed by Independent Component Analysis spike-sorting to examine the extent to which the neuronal network underlying the escape swim behavior of Tritonia diomedea is hard-wired versus fluid from a moment-to-moment perspective. We found that while most neurons were dedicated to the swim network, a small but significant proportion of neurons participated in a surprisingly variable manner. These neurons joined the swim motor program late, left early, burst only on some cycles or skipped cycles of the motor program. We confirmed that this variable neuronal participation was not due to effects of the VSD by finding such neurons with intracellular recording in dye-free saline. Further, these neurons markedly varied their level of participation in the network from swim episode-to-episode. The generality of such unreliably bursting neurons was confirmed by their presence in the rhythmic escape networks of two other molluscan species, Tritonia festiva and Aplysia californica. Our observations support a view that neuronal networks, even those underlying rhythmic and stereotyped motor programs, may be more variable in structure than widely appreciated.
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- 2012
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8. Correction: Widespread Hypomethylation Occurs Early and Synergizes with Gene Amplification during Esophageal Carcinogenesis.
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Hector Alvarez, Joanna Opalinska, Li Zhou, Davendra Sohal, Melissa J. Fazzari, Yiting Yu, Christina Montagna, Elizabeth A. Montgomery, Marcia Canto, Kerry B. Dunbar, Jean Wang, Juan Carlos Roa, Yongkai Mo, Tushar Bhagat, K. H. Ramesh, Linda Cannizzaro, J. Mollenhauer, Reid F. Thompson, Masako Suzuki, Stephen Meltzer, Ari Melnick, John M. Greally, Anirban Maitra, and Amit Verma
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Genetics ,QH426-470 - Published
- 2011
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9. Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis.
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Hector Alvarez, Joanna Opalinska, Li Zhou, Davendra Sohal, Melissa J Fazzari, Yiting Yu, Christina Montagna, Elizabeth A Montgomery, Marcia Canto, Kerry B Dunbar, Jean Wang, Juan Carlos Roa, Yongkai Mo, Tushar Bhagat, K H Ramesh, Linda Cannizzaro, J Mollenhauer, Reid F Thompson, Masako Suzuki, Stephen J Meltzer, Ari Melnick, John M Greally, Anirban Maitra, and Amit Verma
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Genetics ,QH426-470 - Abstract
Although a combination of genomic and epigenetic alterations are implicated in the multistep transformation of normal squamous esophageal epithelium to Barrett esophagus, dysplasia, and adenocarcinoma, the combinatorial effect of these changes is unknown. By integrating genome-wide DNA methylation, copy number, and transcriptomic datasets obtained from endoscopic biopsies of neoplastic progression within the same individual, we are uniquely able to define the molecular events associated progression of Barrett esophagus. We find that the previously reported global hypomethylation phenomenon in cancer has its origins at the earliest stages of epithelial carcinogenesis. Promoter hypomethylation synergizes with gene amplification and leads to significant upregulation of a chr4q21 chemokine cluster and other transcripts during Barrett neoplasia. In contrast, gene-specific hypermethylation is observed at a restricted number of loci and, in combination with hemi-allelic deletions, leads to downregulatation of selected transcripts during multistep progression. We also observe that epigenetic regulation during epithelial carcinogenesis is not restricted to traditionally defined "CpG islands," but may also occur through a mechanism of differential methylation outside of these regions. Finally, validation of novel upregulated targets (CXCL1 and 3, GATA6, and DMBT1) in a larger independent panel of samples confirms the utility of integrative analysis in cancer biomarker discovery.
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- 2011
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10. Thrombotic Thrombocytopenic Purpura Associated with the Acquired Immune Deficiency Syndrome
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Anand Kumar, Jean Wang, David Sutton, and Eric J Bow
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Infectious and parasitic diseases ,RC109-216 - Abstract
A bisexual male presented with acute thrombotic thrombocytopenic purpura (TTP) in association with established acquired immune deficiency syndrome. The patient had classic clinical and laboratory findings of TTP and responded well to plasmapheresis therapy. Previously reported cases of TTP in association with human immunodeficiency virus (HIV) infection are briefly reviewed. Basic concepts in the pathogenesis of TTP are examined in reference to HIV infection.
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- 1992
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11. Three-tiered risk stratification model to predict progression in Barrett's esophagus using epigenetic and clinical features.
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Fumiaki Sato, Zhe Jin, Karsten Schulmann, Jean Wang, Bruce D Greenwald, Tetsuo Ito, Takatsugu Kan, James P Hamilton, Jian Yang, Bogdan Paun, Stefan David, Alexandru Olaru, Yulan Cheng, Yuriko Mori, John M Abraham, Harris G Yfantis, Tsung-Teh Wu, Mary B Fredericksen, Kenneth K Wang, Marcia Canto, Yvonne Romero, Ziding Feng, and Stephen J Meltzer
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Medicine ,Science - Abstract
Barrett's esophagus predisposes to esophageal adenocarcinoma. However, the value of endoscopic surveillance in Barrett's esophagus has been debated because of the low incidence of esophageal adenocarcinoma in Barrett's esophagus. Moreover, high inter-observer and sampling-dependent variation in the histologic staging of dysplasia make clinical risk assessment problematic. In this study, we developed a 3-tiered risk stratification strategy, based on systematically selected epigenetic and clinical parameters, to improve Barrett's esophagus surveillance efficiency.We defined high-grade dysplasia as endpoint of progression, and Barrett's esophagus progressor patients as Barrett's esophagus patients with either no dysplasia or low-grade dysplasia who later developed high-grade dysplasia or esophageal adenocarcinoma. We analyzed 4 epigenetic and 3 clinical parameters in 118 Barrett's esophagus tissues obtained from 35 progressor and 27 non-progressor Barrett's esophagus patients from Baltimore Veterans Affairs Maryland Health Care Systems and Mayo Clinic. Based on 2-year and 4-year prediction models using linear discriminant analysis (area under the receiver-operator characteristic (ROC) curve: 0.8386 and 0.7910, respectively), Barrett's esophagus specimens were stratified into high-risk (HR), intermediate-risk (IR), or low-risk (LR) groups. This 3-tiered stratification method retained both the high specificity of the 2-year model and the high sensitivity of the 4-year model. Progression-free survivals differed significantly among the 3 risk groups, with p = 0.0022 (HR vs. IR) and p
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- 2008
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12. Characteristics of COVID-19 Myocarditis With and Without Multisystem Inflammatory Syndrome
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Dan Leslie Li, Giovanni Davogustto, Jonathan Harvey Soslow, Jean Wang Wassenaar, Amar Pradip Parikh, Joshua David Chew, Jeffrey Michael Dendy, Kristen Marie George-Durrett, David Andres Parra, Daniel Eugene Clark, and Sean Gillette Hughes
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endocrine system diseases ,Myocardium ,COVID-19 ,Contrast Media ,Magnetic Resonance Imaging, Cine ,Gadolinium ,Magnetic Resonance Imaging ,Article ,Myocarditis ,Predictive Value of Tests ,otorhinolaryngologic diseases ,Humans ,cardiovascular diseases ,Cardiology and Cardiovascular Medicine - Abstract
Multisystem inflammatory syndrome (MIS) is a severe complication described in a minority of patients with COVID-19. Myocarditis has been reported in patients with COVID-19, including MIS. In this study, we compared the clinical characteristics and cardiac magnetic resonance (CMR) findings of COVID-19 myocarditis in patients with and without MIS. In the 330 patients with COVID-19 who were referred for CMR at our institution between July 24, 2020, to March 31, 2021, 40 patients were identified as having myocarditis, MIS myocarditis (n = 21) and non-MIS myocarditis (n = 19). MIS myocarditis was characterized by global myocardial inflammation/edema with significantly elevated native T1, whereas only regional inflammation, and edema were noted in the non-MIS group. Distinct late gadolinium enhancement (LGE) patterns—inferior myocardial involvement in non-MIS myocarditis and septal involvement in MIS myocarditis—were identified. The LGE burden was comparable between the 2 groups (5.9% vs 6.6%, MIS vs non-MIS group, p = 0.83). Myocarditis was diagnosed more frequently by CMR in the MIS group (70% vs 6.3%, MIS vs non-MIS, p
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- 2022
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13. Supplementary Figure 2 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Figure 2 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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14. Supplementary Table 3 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Table 3 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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15. Supplementary Table 1 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Table 1 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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16. Supplementary Table 4 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Table 4 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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17. Supplementary Figure 1 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Figure 1 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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18. Supplementary Table 2 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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Stephen J. Meltzer, Richard E. Sampliner, Ziding Feng, Kenneth K. Wang, Yvonne Romero, Paul D. Wagner, Mark A. Nelson, Achyut Bhattacharyya, Marcia Irene Canto, Jean Wang, Kay Washington, Nicholas J. Shaheen, Michael B. Wallace, Herbert C. Wolfsen, John M. Abraham, Stefan David, Rachana Agarwal, Florin M. Selaru, James P. Hamilton, Tetsuo Ito, Takatsugu Kan, Jian Yang, Bogdan C. Paun, Alexandru V. Olaru, Yuriko Mori, Fumiaki Sato, Yingye Zheng, Wen Gu, Yulan Cheng, and Zhe Jin
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Supplementary Table 2 from A Multicenter, Double-Blinded Validation Study of Methylation Biomarkers for Progression Prediction in Barrett's Esophagus
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- 2023
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19. Prospective validation of the BOADICEA multifactorial breast cancer risk prediction model in a large prospective cohort study
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Xin Yang, Mikael Eriksson, Kamila Czene, Andrew Lee, Goska Leslie, Michael Lush, Jean Wang, Joe Dennis, Leila Dorling, Sara Carvalho, Nasim Mavaddat, Jacques Simard, Marjanka K Schmidt, Douglas F Easton, Per Hall, Antonis C Antoniou, Yang, Xin [0000-0003-0037-3790], Lee, Andrew [0000-0003-0677-0252], Antoniou, Antonis C [0000-0001-9223-3116], and Apollo - University of Cambridge Repository
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genetic counseling ,public health ,Genes, BRCA2 ,Genetics ,Humans ,Female ,Breast Neoplasms ,Genetic Predisposition to Disease ,Prospective Studies ,Middle Aged ,women's health ,Risk Assessment ,Genetics (clinical) - Abstract
Peer reviewed: True, Acknowledgements: We would like to thank all the participants, clinicians and other healthcare professionals who have contributed to the KARMA cohort., Funder: CHU de Quebec, Funder: NIHR Cambridge Biomedical Research Centre, Funder: Quebec Breast Cancer Foundation, Funder: Ontario Research Fund, Funder: the Märit and Hans Rausing’s Initiative Against Breast Cancer, BACKGROUND: The multifactorial Breast and Ovarian Analysis of Disease Incidence and Carrier Estimation Algorithm (BOADICEA) breast cancer risk prediction model has been recently extended to consider all established breast cancer risk factors. We assessed the clinical validity of the model in a large independent prospective cohort. METHODS: We validated BOADICEA (V.6) in the Swedish KARolinska Mammography Project for Risk Prediction of Breast Cancer (KARMA) cohort including 66 415 women of European ancestry (median age 54 years, IQR 45-63; 816 incident breast cancers) without previous cancer diagnosis. We calculated 5-year risks on the basis of questionnaire-based risk factors, pedigree-structured first-degree family history, mammographic density (BI-RADS), a validated breast cancer polygenic risk score (PRS) based on 313-SNPs, and pathogenic variant status in 8 breast cancer susceptibility genes: BRCA1, BRCA2, PALB2, CHEK2, ATM, RAD51C, RAD51D and BARD1. Calibration was assessed by comparing observed and expected risks in deciles of predicted risk and the calibration slope. The discriminatory ability was assessed using the area under the curve (AUC). RESULTS: Among the individual model components, the PRS contributed most to breast cancer risk stratification. BOADICEA was well calibrated in predicting the risks for low-risk and high-risk women when all, or subsets of risk factors are included in the risk prediction. Discrimination was maximised when all risk factors are considered (AUC=0.70, 95% CI: 0.66 to 0.73; expected-to-observed ratio=0.88, 95% CI: 0.75 to 1.04; calibration slope=0.97, 95% CI: 0.95 to 0.99). The full multifactorial model classified 3.6% women as high risk (5-year risk ≥3%) and 11.1% as very low risk (5-year risk
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- 2022
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20. Digital Literacy for Secondary School Students: Using Computer Technology to Educate about Credibility of Content Online
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Amir Farrag, Aswin Annamalai, Sheldon Chi, Robin Cohen, Alexandre Parmentier, Glaucia Melo, Anita Santin, Shikhar Sakhuja, Abdul Naik, Jean Wang, Syed Naseem, Rich Clausi, Trevor Clokie, and Gaurav Sahu
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Value (ethics) ,Credibility ,ComputingMilieux_COMPUTERSANDEDUCATION ,Mathematics education ,General Medicine ,Misinformation ,Sociology ,Content (Freudian dream analysis) ,Curriculum ,Digital literacy ,Computer technology - Abstract
This paper presents an approach to educate secondary school students in the province of Ontario about the credibility of online content. The critical focus here is on integrating computer technology into the teaching of the topic; how to introduce the material in classroom settings with respect to the current curriculum is also outlined. Contrast with an existing proposal for digital literacy developed by historians at Stanford University is provided at the outset. In all, the value of appealing to the current digital experiences of students, when revealing the potential for misinformation, is the critical message. Exploration of social media environments popular with youth and opportunities for game-based quizzes for interactive engagement are both advocated.
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- 2020
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21. Association of Sleep Behaviors with Risk of Esophageal Cancer
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Xiaoyan Wang, Ruiyi Tian, Xiaoyu Zong, Myung Sik Jeon, Jingqin Luo, Graham A. Colditz, Jean Wang, Konstantinos K. Tsilidis, Yo-El S Ju, Ramaswamy Govindan, Varun Puri, and Yin Cao
- Abstract
IMPORTANCEEsophageal cancer is among the most lethal type of cancers worldwide. However, risk factors contributing to more than tenfold increase in esophageal cancer in the last 50 years remain underexplored.OBJECTIVEThis study aimed to examine the associations between sleep behaviors and esophageal cancer overall, by histology, and according to genetic predispositions.DESIGNA prospective cohort study.SETTINGA population-based study.PARTICIPANTSA total of 410,428 participants aged 37-73 years at enrollment between 2006 and 2010 in the UK Biobank were followed up until March 31st, 2016 for England and Wales and October 31st, 2015 for Scotland.MAIN OUTCOME AND MEASUREThe risk of incident esophageal cancer.RESULTSDuring 2,799,342 person-years of follow-up, 410 incident esophageal cancer cases (294 adenocarcinomas) were diagnosed. Evening chronotype, sleep 9 h/day, daytime napping, and daytime sleepiness were significantly associated with increased risk of esophageal cancer in age-adjusted models and had aPlikelihood ratio test≤0.20 after multivariable adjustment. Compared with the group without these high-risk behaviors, participants with one high-risk behavior had a 41% (HR=1.41, 95%CI: 1.13, 1.77) increased risk of esophageal cancer, and those with two or more behaviors showed a 79% higher risk (HR=1.79, 95%CI: 1.32, 2.42) (PtrendPtrendPtrend=0.340). The elevated risks for esophageal adenocarcinoma were similar within strata of PRS quintiles (Pinteraction=0.791).CONCLUSION AND RELEVANCEUnhealthy sleep behaviors were associated with an increased risk of esophageal cancer, primarily adenocarcinoma, independent of genetic risk. Sleep behaviors may serve as modifiable factors for the prevention of esophageal cancer, particularly esophageal adenocarcinomas.Key PointsQuestionAre sleep behaviors associated with the risk of esophageal cancer?FindingsIn this prospective cohort study that included 410,428 participants in the UK Biobank, evening chronotype, sleep 9 h/day, daytime napping, and sleepiness were associated with increased risk of esophageal cancer. A greater number of these unhealthy sleep behaviors was associated with a higher risk of esophageal cancer. The elevated risks were primarily observed for esophageal adenocarcinoma and were independent of genetic risk.MeaningSleep behaviors may serve as modifiable factors for the esophageal cancer prevention, particularly esophageal adenocarcinoma, independent of genetic risk.
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- 2022
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22. Understanding the Mechanism and Improving the Design of a Myocardial Matrix Hydrogel for Post-Infarct Repair
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Wassenaar, Jean Wang
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Biomedical engineering ,Extracellular matrix ,Hydrogel ,Myocardial infarction - Abstract
With improved management of patients with acute myocardial infarctions (MI), the prevalence in heart failure (HF) post-MI is expected to rise. Currently, the only successful treatments for HF are total heart transplantation and left ventricular (LV) assist devices, but their uses are limited by the availability of donor hearts and invasiveness of the procedure. In the last decade, advancements have been made towards developing injectable hydrogels for the purpose of cardiac repair. Injections of hydrogels alone have been shown to attenuate the decline in cardiac function and LV remodeling typically seen after MI in both large and small animals models. One of these hydrogels was previously developed by our lab and derived from decellularized porcine ventricular myocardium. The goal of this thesis was study to the mechanisms by which injections of the myocardial matrix hydrogel improve cardiac repair post-MI and improve upon its cardioreparative effects. To better understand how this myocardial matrix is able to induce the beneficial effects observed post-MI, a whole transcriptome microarray was performed on infarct tissue collected from matrix or saline injected infarcts. We showed through pathway analysis that the effects of the injection were dividable into several tissue level phenotypes. To better understand these in vivo phenomena, we wanted to recapitulate the observations by cell culture in vitro with the myocardial matrix. Several cell behaviors relevant to the infarct milieu were studied, including cardiac progenitor cell migration, cardiomyocyte apoptosis, cardiac fibroblast metallomatrix proteinase (MMP) production, and macrophage polarization. We demonstrated that the form of the matrix that is presented to the cells have a dramatic effect on the cellular response, whether through the 3D hydrogel or as soluble peptides released during degradation. In addition, different fractions of the degradation products also have different bioactivity. Results from these in vitro experiments suggested that the bioactivity of the myocardial matrix and its degradation products seemed to be essential to its cardioreparative effects post-MI; thus, we investigated whether this could be enhanced by prolonging the degradation rate of the hydrogel. Through these studies, we provided the first steps towards elucidating the mechanism of actions of the myocardial matrix, by defining the tissue level changes that it induces in infarcted myocardium and identifying the bioactivity in both the hydrogel form and degradation products.
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- 2016
23. S626 ColoWrap Colonoscopy Compression Device Reduces Risk for Ergonomic Injury Among Endoscopy Staff
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David A. Lieberman, Jean Wang, and Seth A. Gross
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medicine.medical_specialty ,Hepatology ,medicine.diagnostic_test ,business.industry ,General surgery ,Gastroenterology ,medicine ,Colonoscopy ,Compression device ,business ,Endoscopy - Published
- 2021
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24. Electrorefractive coupled quantum well modulators: model and experimental results
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Kunkee, Elizabeth T., Chun-Ching Shih, QiSheng Chen, Chia-Jean Wang, and Lembo, Larry J.
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Quantum optics -- Research ,Electrooptical devices -- Optical properties ,Business ,Computers ,Electronics ,Electronics and electrical industries - Abstract
The model presents the InP coupled-quantum-well electrorefractive modulators by mathematical transformations. This shows the impact on modulator performance.
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- 2007
25. Serial-section atlas of theTritoniapedal ganglion
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David Fan, William N. Frost, Jean Wang, Evan S. Hill, Andrew R. Ferrier, Adrian Perez, Nengding Wang, Matthew Cale Britton, and Christopher Brandon
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Neurons ,0301 basic medicine ,Physiology ,General Neuroscience ,Tritonia Sea Slug ,Serial section ,Anatomy ,Biology ,Ganglia, Invertebrate ,Ganglion ,03 medical and health sciences ,Imaging, Three-Dimensional ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,Animals ,030217 neurology & neurosurgery ,Large size ,Research Article - Abstract
The pedal ganglion of the nudibranch gastropod Tritonia diomedea has been the focus of neurophysiological studies for more than 50 yr. These investigations have examined the neural basis of behaviors as diverse as swimming, crawling, reflex withdrawals, orientation to water flow, orientation to the earth’s magnetic field, and learning. Despite this sustained research focus, most studies have confined themselves to the layer of neurons that are visible on the ganglion surface, leaving many neurons, which reside in deeper layers, largely unknown and thus unstudied. To facilitate work on such neurons, the present study used serial-section light microscopy to generate a detailed pictorial atlas of the pedal ganglion. One pedal ganglion was sectioned horizontally at 2-µm intervals and another vertically at 5-µm intervals. The resulting images were examined separately or combined into stacks to generate movie tours through the ganglion. These were also used to generate 3D reconstructions of individual neurons and rotating movies of digitally desheathed whole ganglia to reveal all surface neurons. A complete neuron count of the horizontally sectioned ganglion yielded 1,885 neurons. Real and virtual sections from the image stacks were used to reveal the morphology of individual neurons, as well as the major axon bundles traveling within the ganglion to and between its several nerves and connectives. Extensive supplemental data are provided, as well as a link to the Dryad Data Repository site, where the complete sets of high-resolution serial-section images can be downloaded.NEW & NOTEWORTHY Because of the large size and relatively low numbers of their neurons, gastropod mollusks are widely used for investigations of the neural basis of behavior. Most studies, however, focus on the neurons visible on the ganglion surface, leaving the majority, located out of sight below the surface, unexamined. The present light microscopy study generates the first detailed visual atlas of all neurons of the highly studied Tritonia pedal ganglion.
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- 2018
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26. Treating Iron Overload Disorders with a Novel Therapeutic Antibody Targeting TMPRSS6
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Xin Du, Lei Huang, Zijun Ouyang, Yu Mao, Bin Zheng, Jean Wang, and Buxin Chen
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TMPRSS6 ,business.industry ,Immunology ,Therapeutic antibody ,Cancer research ,Medicine ,Cell Biology ,Hematology ,business ,Biochemistry - Abstract
Iron is an essential element for almost all living organisms as it participates in a wide variety of metabolic processes. Disorders of iron metabolism are among the most prevalent human diseases, ranging from anemia to hemochromatosis. Excessive iron accumulations in major organs of iron overload patients can lead to high mortality. Hepcidin, a HAMP-encoded liver hormone, is the master regulator of iron homeostasis. By binding to the sole iron exporter ferroportin and causing internalization and degradation of the complex, hepcidin inhibits cellular iron efflux, thereby lowers plasma iron levels. Inappropriately suppressed/low hepcidin production is central to iron overload. Transmembrane protease serine-6 (TMPRSS6), a type II transmembrane serine protease primarily expressed in liver, downregulates hepcidin expression through BMP-SMAD pathway. TMPRSS6 deficiencies have been shown to cause hepcidin overexpression in both TMPRSS6-mutant mice and in patients with iron-refractory iron deficiency anemia (IRIDA). Therefore, TMPRSS6 is a viable therapeutic target for iron overload disorders. Here we report the generation of an anti-TMPRSS6 antibody through a hybridoma campaign using a DNA-based immunization approach, followed by humanization and sequence optimization. Lead antibody, hzMWTx-003 selectively binds human TMPRSS6 with low nanomolar affinity (KD: 7.6nM), and is cross-reactive to rodent (mouse and rat) and monkey (cynomolgus and rhesus) TMPRSS6. Single-dose injection of hzMWTx-003 was able to significantly elevate serum hepcidin and liver HAMP RNA levels in wildtype mice, resulting in significantly reduced serum iron level. The Hbb th3/+ mouse model of β-thalassemia, like its human counterpart, is characterized by iron overload, ineffective erythropoiesis and splenomegaly. Treatment of Hbb th3/+mice with MWTx-003 effectively increased hepcidin expression at both protein and RNA levels, leading to significantly reduced serum iron and liver non-heme iron content. MWTx-003 also dramatically improved anemia and ineffective erythropoiesis, and alleviated splenomegaly in these mice. CMC development of hzMWTx-003 confirms outstanding biophysical properties. Preliminary studies in cynomolgus monkey using GLP-grade material demonstrated good pharmacokinetics of hzMWTx-003 and expected pharmacodynamic response where reduction of serum iron could be sustained for 21 days after single dose administration. A single dose toxicology study in cynomolgus monkey revealed no safety concerns, and no production of anti-idiotype antibodies was detected. In summary, anti-TMPRSS6 antibody MWTx-003 represents a promising therapy for iron overload disorders such as β-thalassemia, and potentially other diseases where iron restriction is beneficial. Disclosures Chen: Mabwell Therapeutics Inc: Current Employment. Wang: Mabwell Therapeutics Inc: Current Employment. Zheng: Mabwell (Shanghai) Bioscience Co. Ltd: Current Employment. Huang: Mabwell Therapeutics Inc: Current Employment. Mao: Mabwell (Shanghai) Bioscience Co. Ltd.: Current Employment. Ouyang: Mabwell (Shanghai) Bioscience Co. Ltd.: Current Employment. Du: Mabwell Therapeutics Inc: Current Employment.
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- 2021
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27. Abstract 1843: Dicovery and characterization of a novel anti-human CXCR5 antibody for the treatment of B cell lymphomas
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Nicola Beltraminelli, Mingjie Chen, Francisco Adrian, Stephanie Beq, Hombline Poullain, Clarisse Monchecourt, Jean Wang, Sami Ellouze, Carine George, Juying Li, Germain Margall-Ducos, Qian Zhang, Ayrin Kok, Yun-Yueh Lu, Muriel D. David, and Liang Schweizer
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Cancer Research ,medicine.anatomical_structure ,Oncology ,biology ,Chemistry ,biology.protein ,medicine ,Antibody ,Molecular biology ,B cell ,CXCR5 - Abstract
CXCR5 is a seven transmembrane protein coupled to protein G(i) expressed mainly on mature, resting B cells, follicular helper T cells (TFH), tonsillar B cells, and B cell lymphoma cells. CXCR5 is activated by its ligand CXCL13 and involved in cell migration. Dysregulated CXCL13 and/or CXCR5 expression and signaling have been associated with cancer promotion, as well as autoimmune and chronic inflammatory disorders. Overexpression of CXCL13 in autoimmune and lymphoproliferative disorders has been shown to correlate with disease progression. We therefore hypothesized that an antibody that selectively depletes CXCR5+ malignant B cells through antibody dependent cell-mediated cytotoxicity (ADCC) could be developed to treat B cell lymphomas. Here, we present preclinical data supporting the rationale for indication selection, biomarker identification, dose selection, and phase I clinical trial design. Using our single-cell screening platform technology, CelliGo™, we identified a panel of monoclonal antibodies against human CXCR5. We selected HFB2-4, which binds to CXCR5 expressing cells, blocks CXCL13-induced intracellular signaling and B cell migration, and induces ADCC of Raji B cell lymphoma cells at sub-nM concentrations. HFB2-4 demonstrates good PK behavior in mice and exhibits potent anti-tumor activity in a Raji xenograft murine model. HFB2-4 efficacy in this model is comparable to that of rituximab, despite a lower number of huCXCR5 receptors compared to CD20 on the surface of Raji cells. Our data shows that HFB2-4 holds promise as a therapeutic agent for B cell lymphoproliferative diseases by depleting CXCR5+ tumor B cells in refractory B cell lymphoma and lymphomas derived from severe Sjogren syndrome. Compared to the emerging treatments for refractory B cell lymphomas such as Antibody-Drug-Conjugates, bi-specific antibodies or cell therapies, HFB2-4 may represent a well-tolerated, efficacious, cost-efficient and easy to manufacture alternative. Citation Format: Ayrin Kok, Germain Margallducos, Stephanie Beq, Clarisse Monchecourt, Hombline Poullain, Muriel David, Carine George, Sami Ellouze, Mingjie Chen, Yun-Yueh Lu, Juying Li, Qian Zhang, Jean Wang, Francisco Adrian, Liang Schweizer, Nicola Beltraminelli. Dicovery and characterization of a novel anti-human CXCR5 antibody for the treatment of B cell lymphomas [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 1843.
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- 2021
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28. Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
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William J. Greenleaf, Jean Wang, Darisha Jhutty, Grace X.Y. Zheng, Kathryn E. Yost, Yifeng Yin, Preyas Shah, Corey M. Nemec, Ansuman T. Satpathy, Li Wang, Francesca Meschi, M. Ryan Corces, Howard Y. Chang, Jason C. Bell, Jeffrey M. Granja, Geoffrey P. McDermott, Paul G. Giresi, Anne Lynn S. Chang, Yanyan Qi, Brett N. Olsen, Maxwell R. Mumbach, and Sarah E. Pierce
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Cell type ,T cell ,Cellular differentiation ,T-Lymphocytes ,Cell ,Biomedical Engineering ,Bioengineering ,Bone Marrow Cells ,Biology ,Applied Microbiology and Biotechnology ,Article ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Single-cell analysis ,medicine ,Humans ,Computer Simulation ,Progenitor cell ,030304 developmental biology ,0303 health sciences ,Tumor microenvironment ,Cell growth ,High-Throughput Nucleotide Sequencing ,Chromatin ,Cell biology ,Hematopoiesis ,medicine.anatomical_structure ,Gene Expression Regulation ,Leukocytes, Mononuclear ,Molecular Medicine ,Single-Cell Analysis ,030217 neurology & neurosurgery ,CD8 ,Biotechnology ,Transcription Factors - Abstract
Understanding complex tissues requires single-cell deconstruction of gene regulation with precision and scale. Here we present a massively parallel droplet-based platform for mapping transposase-accessible chromatin in tens of thousands of single cells per sample (scATAC-seq). We obtain and analyze chromatin profiles of over 200,000 single cells in two primary human systems. In blood, scATAC-seq allows marker-free identification of cell type-specificcis- andtrans-regulatory elements, mapping of disease-associated enhancer activity, and reconstruction of trajectories of differentiation from progenitors to diverse and rare immune cell types. In basal cell carcinoma, scATAC-seq reveals regulatory landscapes of malignant, stromal, and immune cell types in the tumor microenvironment. Moreover, scATAC-seq of serial tumor biopsies before and after PD-1 blockade allows identification of chromatin regulators and differentiation trajectories of therapy-responsive intratumoral T cell subsets, revealing a shared regulatory program driving CD8+T cell exhaustion and CD4+T follicular helper cell development. We anticipate that droplet-based single-cell chromatin accessibility will provide a broadly applicable means of identifying regulatory factors and elements that underlie cell type and function.
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- 2019
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29. An Argument for Amphetamine-Induced Hallucinations in an Invertebrate
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Jean Wang, Cindy L. Brandon, Anne H. Lee, and William N. Frost
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0301 basic medicine ,Drugs of abuse ,lcsh:QP1-981 ,Physiology ,invertebrate ,amphetamine ,Skin contact ,mollusk ,Biology ,Afferent Neurons ,lcsh:Physiology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Repeated doses ,Tritonia ,Physiology (medical) ,medicine ,hallucinations ,Amphetamine ,Neuroscience ,030217 neurology & neurosurgery ,medicine.drug ,Original Research - Abstract
Hallucinations - compelling perceptions of stimuli that aren't really there - occur in many psychiatric and neurological disorders, and are triggered by certain drugs of abuse. Despite their clinical importance, the neuronal mechanisms giving rise to hallucinations are poorly understood, in large part due to the absence of animal models in which they can be induced, confirmed to be endogenously generated, and objectively analyzed. In humans, amphetamine (AMPH) and related psychostimulants taken in large or repeated doses can induce hallucinations. Here we present evidence for such phenomena in the marine mollusk Tritonia diomedea. Animals injected with AMPH were found to sporadically launch spontaneous escape swims in the absence of eliciting stimuli. Deafferented isolated brains exposed to AMPH, where real stimuli could play no role, generated sporadic, spontaneous swim motor programs. A neurophysiological search of the swim network traced the origin of these drug-induced spontaneous motor programs to spontaneous bursts of firing in the S-cells, the CNS afferent neurons that normally inform the animal of skin contact with its predators and trigger the animal's escape swim. Further investigation identified AMPH-induced enhanced excitability and plateau potential properties in the S-cells. Taken together, these observations support an argument that Tritonia's spontaneous AMPH-induced swims are triggered by false perceptions of predator contact - i.e., hallucinations-and illuminate potential cellular mechanisms for such phenomena.
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- 2018
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30. Memory Formation in Tritonia via Recruitment of Variably Committed Neurons
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William N. Frost, Sunil K. Vasireddi, Jean Wang, Angela M. Bruno, and Evan S. Hill
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Tritonia (gastropod) ,Agricultural and Biological Sciences(all) ,Mechanism (biology) ,Biochemistry, Genetics and Molecular Biology(all) ,Neurosciences ,Motor program ,Anatomy ,Biology ,biology.organism_classification ,Serotonergic ,General Biochemistry, Genetics and Molecular Biology ,Article ,Neuroplasticity ,Synaptic plasticity ,Memory formation ,Humans ,Mass Screening ,Tritonia Sea Slug ,General Agricultural and Biological Sciences ,Neuroscience - Abstract
Prior studies have found that functional networks can rapidly add neurons as they build short-term memories, yet little is known about the principles underlying this process. Using voltage-sensitive dye imaging, we found that short-term sensitization of Tritonia's swim motor program involves rapid expansion of the number of participating neurons. Tracking neurons across trials revealed that this involves the conversion of recently discovered variably participating neurons to reliable status. Further, we identify a candidate serotonergic cellular mechanism mediating this process. Our findings reveal a new mechanism for memory formation, involving recruitment of pre-positioned, variably committed neurons into memory networks. This represents a shift from the field's long-term focus on synaptic plasticity, toward a view that certain neurons have characteristics that predispose them to join networks with learning.
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- 2015
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31. Diagnosis of sarcoidosis from a biopsy of a dilated mammary duct
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Raynal Hamilton, Joseph J. Spigel, Zeeshan Shah, Callan Mason, Metin Punar, Jean Wang, and Robert Yang
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Mammary duct ,General Medicine ,030204 cardiovascular system & hematology ,Malignancy ,medicine.disease ,Asymptomatic ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Case Studies ,Biopsy ,medicine ,Etiology ,030212 general & internal medicine ,Radiology ,Sarcoidosis ,medicine.symptom ,Differential diagnosis ,business ,skin and connective tissue diseases ,Duct (anatomy) - Abstract
Sarcoidosis is an immunologic disease of unknown etiology that manifests most frequently within the lungs or associated lymph nodes. Sarcoidosis involving the breast is seen in
- Published
- 2017
32. Correction to 'Sulfonamides as Selective NaV1.7 Inhibitors: Optimizing Potency and Pharmacokinetics to Enable in Vivo Target Engagement'
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Robert T. Fremeau, Robert S. Foti, Hanh Nho Nguyen, Jeff S. McDermott, Jean Wang, Christiane Bode, Bingfan Du, Joseph Ligutti, Thomas Dineen, Hua Gao, Thomas Kornecook, Jonathan Roberts, Brian E. Hall, Charles Kreiman, Liyue Huang, Matthew Weiss, Jessica Able, Min-Hwa Jasmine Lin, Paul E. Rose, Isaac E. Marx, Emily A. Peterson, Violeta Yu, Erin F. DiMauro, Bryan D. Moyer, Daniel S. La, Beth D. Youngblood, Dong Liu, Margaret Y. Chu-Moyer, Hakan Gunaydin, and Howard Bregman
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Pharmacokinetics ,business.industry ,In vivo ,Organic Chemistry ,Drug Discovery ,Target engagement ,Potency ,Medicine ,Pharmacology ,business ,Biochemistry - Abstract
Human genetic evidence has identified the voltage-gated sodium channel Na
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- 2017
33. Sulfonamides as Selective NaV1.7 Inhibitors: Optimizing Potency and Pharmacokinetics to Enable in Vivo Target Engagement
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Min-Hwa Jasmine Lin, Paul E. Rose, Violeta Yu, Hakan Gunaydin, Robert T. Fremeau, Charles Kreiman, Daniel S. La, Joseph Ligutti, Matthew Weiss, Beth D. Youngblood, Thomas Dineen, Thomas Kornecook, Dong Liu, Bingfan Du, Brian E. Hall, Erin F. DiMauro, Jean Wang, Isaac E. Marx, Robert S. Foti, Emily A. Peterson, Jessica Able, Liyue Huang, Margaret Chu-Moyer, Jeff S. McDermott, Christiane Bode, Bryan D. Moyer, Howard Bregman, Jonathan Roberts, and Hua Gao
- Subjects
biology ,010405 organic chemistry ,Sodium channel ,Organic Chemistry ,Sulfonamide (medicine) ,Nav1.5 ,Pharmacology ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,chemistry ,Pharmacokinetics ,In vivo ,Drug Discovery ,biology.protein ,Quinazoline ,medicine ,Potency ,Dosing ,medicine.drug - Abstract
Human genetic evidence has identified the voltage-gated sodium channel NaV1.7 as an attractive target for the treatment of pain. We initially identified naphthalene sulfonamide 3 as a potent and selective inhibitor of NaV1.7. Optimization to reduce biliary clearance by balancing hydrophilicity and hydrophobicity (Log D) while maintaining NaV1.7 potency led to the identification of quinazoline 16 (AM-2099). Compound 16 demonstrated a favorable pharmacokinetic profile in rat and dog and demonstrated dose-dependent reduction of histamine-induced scratching bouts in a mouse behavioral model following oral dosing.
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- 2016
34. 11q13 is a susceptibility locus for hormone receptor positive breast cancer
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Dong Young Noh, Pascal Guénel, Graeme Elliott, Vesa Kataja, Shamil Gancev, Xianshu Wang, Shan Wang-Gohrke, Annegien Broeks, Florence Menegaux, Hans Wildiers, Richard van Hien, Natalia Bogdanova, Jean Wang, Puttisak Puttawibul, Betül T. Yesilyurt, Peter Devilee, Gord Glendon, Katri Pylkäs, Mark E. Sherman, Jenny Chang-Claude, Federik Marme, Michael Bremer, Katarzyna Durda, Sarah Schott, Vessela N. Kristensen, Paolo Radice, Teresa Selander, Kamila Czene, Alfons Meindl, Gianluca Severi, Angela Cox, Maartje J. Hooning, Claus R. Bartram, John L. Hopper, Ursel Eilber, Michael Jones, M. Pilar Zamora, Stephen J. Chanock, Laura Baglietto, Caroline M. Seynaeve, Daehee Kang, Thilo Dörk, Rita K. Schmutzler, Julian Peto, Børge G. Nordestgaard, Loris Bernard, Stig E. Bojesen, Barbara Burwinkel, Douglas F. Easton, Arif B. Ekici, kConFab Investigators, Mervi Grip, Robert A.E.M. Tollenaar, Argyrios Ziogas, Jonathan Beesley, Paolo Peterlongo, Volker Arndt, Xiaoqing Chen, Nichola Johnson, Jaana M. Hartikainen, Ming-Feng Hou, Diether Lambrechts, Ruediger Schulz-Wendtland, Jan Lubinski, Taru A. Muranen, Heli Nevanlinna, Esther M. John, Graham G. Giles, Chen-Yang Shen, Jolanta Lissowska, Ian W. Brock, Grethe I. Grenaker Alnæs, Gillian S. Dite, Charlotte Lanng, Hiltrud Brauch, Anthony J. Swerdlow, MC Southey, Christina Justenhoven, Manjeet K. Humphreys, Keun-Young Yoo, Elinor J. Sawyer, Emilie Cordina-Duverger, Jose Ignacio Arias Perez, Fergus J. Couch, Peter Schürmann, Stefan Nickels, Jianjun Liu, Marjanka K. Schmidt, Zachary S. Fredericksen, Yuri I. Rogov, Ute Hamann, Elza Khusnutdinova, Hermann Brenner, Sara Margolin, Natalia Antonenkova, Peter A. Fasching, Matthias W. Beckmann, Johann H. Karstens, Montserrat Garcia-Closas, Patrick Neven, Thomas Brüning, Carl Blomqvist, Heiko Müller, Jyh Cherng Yu, Katarzyna Jaworska, Yon Ko, Pei Ei Wu, Arto Mannermaa, Rebecca Hein, Darya Prokofieva, Melissa C. Southey, Andreas Schneeweiss, Irene L. Andrulis, Christa Stegmaier, Robert Winqvist, Annika Lindblom, Anna Jakubowska, Paul D.P. Pharoah, Peter Hillemanns, Alexander Miron, Roger L. Milne, Marina Bermisheva, Dieter Flesch-Janys, Christof Sohn, Nicola Miller, Georgia Chenevix-Trench, Kristiina Aittomäki, Ian Tomlinson, Thérèse Truong, Anna Marie Mulligan, Siranoush Manoukian, Robert Paridaens, Anne Lise Børresen-Dale, Suthee Rattanamongkongul, Olivia Fletcher, Simon S. Cross, Artitaya Lophatananon, Isabel dos Santos Silva, Janet E. Olson, Nick Orr, Per Hall, Alan Ashworth, Javier Benitez, Hoda Anton-Culver, Veli-Matti Kosma, Alison M. Dunning, Kenneth Muir, Sten Cornelissen, Carmel Apicella, Arja Jukkola-Vuorinen, Michael J. Kerin, ~, and Medical Oncology
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Oncology ,hormone receptor status ,Estrogen receptor ,Genome-wide association study ,0302 clinical medicine ,Risk Factors ,Genotype ,Receptors ,single-nucleotide polymorphisms ,common variants ,Pair 11 ,Progesterone ,Genetics (clinical) ,Genetics ,0303 health sciences ,repair genes ,Single Nucleotide ,identifies 5 ,11q13 ,Breast cancer susceptibility ,Genome-wide association ,Hormone receptor status ,Polymorphisms ,Risk factors ,Breast Neoplasms ,Chromosomes, Human, Pair 11 ,European Continental Ancestry Group ,Female ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Polymorphism, Single Nucleotide ,Receptors, Estrogen ,Receptors, Progesterone ,3. Good health ,ovarian-cancer ,030220 oncology & carcinogenesis ,Human ,brca1 mutations ,medicine.medical_specialty ,Single-nucleotide polymorphism ,Biology ,Chromosomes ,Article ,White People ,03 medical and health sciences ,Breast cancer ,SDG 3 - Good Health and Well-being ,Internal medicine ,Progesterone receptor ,medicine ,Polymorphism ,030304 developmental biology ,breast cancer susceptibility ,Odds ratio ,tumor characteristics ,medicine.disease ,confer susceptibility ,Estrogen ,genome-wide association ,family registry ,Ovarian cancer ,polymorphisms - Abstract
Journal article A recent two-stage genome-wide association study (GWAS) identified five novel breast cancer susceptibility loci on chromosomes 9, 10, and 11. To provide more reliable estimates of the relative risk associated with these loci and investigate possible heterogeneity by subtype of breast cancer, we genotyped the variants rs2380205, rs1011970, rs704010, rs614367, and rs10995190 in 39 studies from the Breast Cancer Association Consortium (BCAC), involving 49,608 cases and 48,772 controls of predominantly European ancestry. Four of the variants showed clear evidence of association (P â ¤ 3 Ã 10(-9) ) and weak evidence was observed for rs2380205 (P = 0.06). The strongest evidence was obtained for rs614367, located on 11q13 (per-allele odds ratio 1.21, P = 4 Ã 10(-39) ). The association for rs614367 was specific to estrogen receptor (ER)-positive disease and strongest for ER plus progesterone receptor (PR)-positive breast cancer, whereas the associations for the other three loci did not differ by tumor subtype. EC Seventh Framework Programme - grant number HEALTH-F2-2009-223175 peer-reviewed
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- 2016
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35. Environmental taxes in a differentiated mixed duopoly
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Leonard F.S. Wang and Jean Wang
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Microeconomics ,Economics and Econometrics ,Tax revenue ,Market structure ,Government ,Product market ,Economics ,Social Welfare ,Product (category theory) ,Economic surplus ,Duopoly - Abstract
Beladi and Chao (2006) and Barcena-Ruiz and Garzon (2006) considered the role of environmental policy on the decision whether to privatize a public firm in different market structures. This paper re-examines whether privatization improves (or deteriorates) the environment in a mixed duopolistic framework with differentiated product and pollution abatement. It is shown that, due to privatization, less attention is paid to pollution abatement by all the firms coupled with less environment taxes levied by the government in a differentiated duopoly, and the environment is more (less) damaged when the product is less (more) substitutable. When the product is highly substitutable, industry profits increase because this softens the intensity of the product market, but social welfare deteriorates accompanied with the path of privatization because the loss of consumer surplus and tax revenue exceeds the increases in profits, even if the environment is less damaged.
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- 2009
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36. Virtual Metrology Modeling for Plasma Etch Operations
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Tzu-yu Wang, Chen-Hua Yu, Henry Lo, Costas J. Spanos, Chun-Hsien Lin, Jean Wang, Dekong Zeng, and Yajing Tan
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Plasma etching ,business.industry ,Chemistry ,Plasma ,Condensed Matter Physics ,Industrial and Manufacturing Engineering ,Electronic, Optical and Magnetic Materials ,Data modeling ,Chamber pressure ,Metrology ,Etching (microfabrication) ,Electronic engineering ,Virtual metrology ,Wafer ,Electrical and Electronic Engineering ,Process engineering ,business - Abstract
The objective of this paper is to present the utilization of information produced during plasma etching for the prediction of etch bias. A plasma etching process typically relies on the concentration of electrically activated chemical species in a reaction chambers over time, depending on chamber pressure, gas flow rate, power level, and other chamber and wafer properties. Plasma properties, as well as equipment factors, are complex and vary over time. In this paper, we will use various statistical techniques to address challenges due to the nature of plasma data: high dimensionality, colinearity, parameter interactions and nonlinearities, variation of data structure due to equipment condition changing over time, etc. The emphasis will be data integrity, variable selection, accommodation for process dynamics, and model-building methods. Different techniques will be evaluated with an industrial dataset.
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- 2009
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37. Electrorefractive Coupled Quantum Well Modulators: Model and Experimental Results
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Elizabeth T. Kunkee, Chun-Ching Shih, QiSheng Chen, Larry Lembo, and Chia-Jean Wang
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Coupling ,Physics ,business.industry ,Quantum-confined Stark effect ,Electro-optic modulator ,Condensed Matter Physics ,Mach–Zehnder interferometer ,Atomic and Molecular Physics, and Optics ,Laser linewidth ,Optics ,Optical modulator ,Optoelectronics ,Electrical and Electronic Engineering ,business ,Phase modulation ,Quantum well - Abstract
Theoretical modeling of InP coupled-quantum-well electroabsorptive and electrorefractive modulators is presented. Key mathematical transformations are developed that allow efficient computation of electrorefraction for a complex multiparameter coupled quantum well structure. The model is realized in the Mathematica platform and is used to simulate the impact of well and barrier composition and thickness on Mach-Zehnder modulator performance. The advantage of using coupling between quantum wells is quantified and in addition, it is shown that linewidth broadening is a key input to the model and has a critical impact on modulator performance. The model is compared to experimental data from phase modulators and Mach-Zehnder intensity modulators.
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- 2007
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38. Nanoscale waveguiding methods
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Chia-Jean Wang and Lih Y. Lin
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Materials science ,Fabrication ,Negative dielectric ,Nanophotonics ,Physics::Optics ,Nanotechnology ,Integrated circuit ,law.invention ,Materials Science(all) ,law ,Miniaturization ,lcsh:TA401-492 ,General Materials Science ,Photonic crystal ,business.industry ,Quantum dots ,Nano Review ,Condensed Matter Physics ,Quantum dot ,Optoelectronics ,Diffraction limit ,lcsh:Materials of engineering and construction. Mechanics of materials ,Photonics ,business ,Waveguide ,Waveguides - Abstract
While 32 nm lithography technology is on the horizon for integrated circuit (IC) fabrication, matching the pace for miniaturization with optics has been hampered by the diffraction limit. However, development of nanoscale components and guiding methods is burgeoning through advances in fabrication techniques and materials processing. As waveguiding presents the fundamental issue and cornerstone for ultra-high density photonic ICs, we examine the current state of methods in the field. Namely, plasmonic, metal slot and negative dielectric based waveguides as well as a few sub-micrometer techniques such as nanoribbons, high-index contrast and photonic crystals waveguides are investigated in terms of construction, transmission, and limitations. Furthermore, we discuss in detail quantum dot (QD) arrays as a gain-enabled and flexible means to transmit energy through straight paths and sharp bends. Modeling, fabrication and test results are provided and show that the QD waveguide may be effective as an alternate means to transfer light on sub-diffraction dimensions.
- Published
- 2007
39. Unusual presentation of metastatic ovarian carcinoma as an enlarged intramammary lymph node
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Joseph J. Spigel, Raynal Hamilton, Callan Mason, Umesh Oza, Kendall Yokubaitis, Zeeshan Shah, and Jean Wang
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,business.industry ,General Medicine ,Breast malignancy ,medicine.disease ,Metastasis ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Lymphatic system ,medicine.anatomical_structure ,Case Studies ,030220 oncology & carcinogenesis ,Ovarian carcinoma ,Medicine ,Presentation (obstetrics) ,business ,Lymph node - Abstract
Metastasis to the breast most commonly arises from a contralateral primary breast malignancy; however, metastatic disease can also result from extramammary malignancies by hematogenous or lymphatic dissemination. This case report reviews an unusual presentation of primary ovarian carcinoma with metastasis to an intramammary lymph node.
- Published
- 2015
40. Using segmented regression analysis of interrupted time series data to assess colonoscopy quality outcomes of a web-enhanced implementation toolkit to support evidence-based practices for bowel preparation: a study protocol
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Julia Maki, Alex T. Ramsey, Yan Yan, Rebecca Lobb, Beth Prusaczyk, and Jean Wang
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Evidence-based practice ,Health Personnel ,media_common.quotation_subject ,Psychological intervention ,Health Informatics ,Health informatics ,Pragmatic trial ,Health administration ,Study Protocol ,03 medical and health sciences ,0302 clinical medicine ,Patient Education as Topic ,Nursing ,Humans ,Medicine ,Quality (business) ,030212 general & internal medicine ,Quality of Health Care ,media_common ,Colonoscopy care ,Medicine(all) ,Internet ,Evidence-Based Medicine ,business.industry ,Health Policy ,Public Health, Environmental and Occupational Health ,Health services research ,Interrupted Time Series Analysis ,Colonoscopy ,General Medicine ,Evidence-based medicine ,Toolkits ,PRECIS ,3. Good health ,Socioeconomic Factors ,Research Design ,Patient Compliance ,Regression Analysis ,030211 gastroenterology & hepatology ,Web-based ,business ,Implementation strategies ,Patient education - Abstract
Background While there is convincing evidence on interventions to improve bowel preparation for patients, the evidence on how to implement these evidence-based practices (EBPs) in outpatient colonoscopy settings is less certain. The Strategies to Improve Colonoscopy (STIC) study compares the effect of two implementation strategies, physician education alone versus physician education plus an implementation toolkit for staff, on adoption of three EBPs (split-dosing of bowel preparation, low-literacy education, teach-back) to improve pre-procedure and intra-procedure quality measures. The implementation toolkit contains a staff education module, website containing tools to support staff in delivering EBPs, tailored patient education materials, and brief consultation with staff to determine how the EBPs can be integrated into the existing workflow. Given adaptations to the implementation plan and intentional flexibility in the delivery of the EBPs, we utilize a pragmatic study to balance external validity with demonstrating effectiveness of the implementation strategies. Methods/Design Participants will include all outpatient colonoscopy physicians, staff, and patients from a convenience sample of six endoscopy settings. Aim #1 will explore the relative effect of two strategies to implement patient-level EBPs on adoption and clinical quality outcomes. We will assess the change in level and trends of clinical quality outcomes (i.e., adequacy of bowel preparation, adenoma detection) using segmented regression analysis of interrupted time series data with two groups (intervention and delayed start). Aim #2 will examine the influence of organizational readiness to change on EBP implementation. We use a PRECIS diagram to reflect the extent to which each indicator of the study was pragmatic versus explanatory, revealing a largely pragmatic study. Discussion Implementation challenges have already motivated several adaptations to the original plan, reflecting the nature of implementation in real-world healthcare settings. The pragmatic study responds to the evolving needs of its healthcare partners and allows for flexibility in intervention delivery, thereby informing clinical decision-making in real-world settings. The current study will provide information about what works (intervention effectiveness), for whom it works (influence of Medicaid versus other insurance), in which contexts it works (setting characteristics that influence implementation), and how it works best (comparison of implementation strategies). Electronic supplementary material The online version of this article (doi:10.1186/s13012-015-0276-3) contains supplementary material, which is available to authorized users.
- Published
- 2015
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41. Impact of Henda's law on the utilization of screening breast magnetic resonance imaging
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Kendall Yokubaitis, Zeeshan Shah, Jean Wang, Callan Mason, and Evan Howard
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Breast tissue ,Screening test ,medicine.diagnostic_test ,business.industry ,MAMMOGRAPHIC DENSITY ,General Medicine ,Breast magnetic resonance imaging ,Fibroglandular Tissue ,medicine.disease ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Law ,medicine ,Mammography ,Risk factor ,business ,skin and connective tissue diseases ,030217 neurology & neurosurgery ,Original Research - Abstract
Female breast tissue is composed of variable proportions of fat and fibroglandular tissue, and in general, an increased ratio of fibroglandular tissue to fat corresponds to increased mammographic density. Studies suggest that mammographic density is an independent risk factor for breast cancer, and the sensitivity of mammography can be lower with heterogeneously dense or extremely dense breasts. Nineteen states have legal statutes requiring that patients be notified if they have dense breasts, including the state of Texas. Henda's law, mandated on January 1, 2012 in Texas, suggests that patients with dense breasts could benefit from additional screening tests such as breast magnetic resonance imaging (MRI). Our study examined the impact of Henda's law by comparing the number of screening breast MRIs performed for dense breasts before and after the law's implementation. Results showed a 23-fold increase in the number of dense breast MRIs in the 2 years that this new legislation was in effect. This increase could have substantial implications for the health care economy, and further studies are needed to determine the cost-effectiveness of this additional screening tool.
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- 2015
42. Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for 13 Cancer Types
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Sampson, Joshua N. Wheeler, William A. Yeager, Meredith and Panagiotou, Orestis Wang, Zhaoming Berndt, Sonja I. Lan, Qing Abnet, Christian C. Amundadottir, Laufey T. Figueroa, Jonine D. Landi, Maria Teresa Mirabello, Lisa Savage, Sharon A. Taylor, Philip R. De Vivo, Immaculata McGlynn, Katherine A. Purdue, Mark P. Rajaraman, Preetha Adami, Hans-Olov and Ahlbom, Anders Albanes, Demetrius Amary, Maria Fernanda An, She-Juan Andersson, Ulrika Andriole, Jr., Gerald Andrulis, Irene L. Angelucci, Emanuele Ansell, Stephen M. Arici, Cecilia Armstrong, Bruce K. Arslan, Alan A. Austin, Melissa A. Baris, Dalsu Barkauskas, Donald A. Bassig, Bryan A. and Becker, Nikolaus Benavente, Yolanda Benhamou, Simone Berg, Christine Van Den Berg, David Bernstein, Leslie Bertrand, Kimberly A. Birmann, Brenda M. Black, Amanda Boeing, Heiner and Boffetta, Paolo Boutron-Ruault, Marie-Christine Bracci, Paige M. Brinton, Louise Brooks-Wilson, Angela R. and Bueno-de-Mesquita, H. Bas Burdett, Laurie Buring, Julie and Butler, Mary Ann Cai, Qiuyin Cancel-Tassin, Geraldine and Canzian, Federico Carrato, Alfredo Carreon, Tania Carta, Angela Chan, John K. C. Chang, Ellen T. Chang, Gee-Chen and Chang, I-Shou Chang, Jiang Chang-Claude, Jenny Chen, Chien-Jen Chen, Chih-Yi Chen, Chu Chen, Chung-Hsing and Chen, Constance Chen, Hongyan Chen, Kexin Chen, Kuan-Yu and Chen, Kun-Chieh Chen, Ying Chen, Ying-Hsiang Chen, Yi-Song and Chen, Yuh-Min Chien, Li-Hsin Chirlaque, Maria-Dolores and Choi, Jin Eun Choi, Yi Young Chow, Wong-Ho Chung, Charles C. and Clavel, Jacqueline Clavel-Chapelon, Franoise Cocco, Pierluigi Colt, Joanne S. Comperat, Eva Conde, Lucia and Connors, Joseph M. Conti, David Cortessis, Victoria K. and Cotterchio, Michelle Cozen, Wendy Crouch, Simon Crous-Bou, Marta Cussenot, Olivier Davis, Faith G. Ding, Ti Diver, W. Ryan Dorronsoro, Miren Dossus, Laure Duell, Eric J. and Ennas, Maria Grazia Erickson, Ralph L. Feychting, Maria and Flanagan, Adrienne M. Foretova, Lenka Fraumeni, Jr., Joseph F. and Freedman, Neal D. Freeman, Laura E. Beane Fuchs, Charles and Gago-Dominguez, Manuela Gallinger, Steven Gao, Yu-Tang and Gapstur, Susan M. Garcia-Closas, Montserrat Garcia-Closas, Reina and Gascoyne, Randy D. Gastier-Foster, Julie Gaudet, Mia M. and Gaziano, J. Michael Giffen, Carol Giles, Graham G. and Giovannucci, Edward Glimelius, Bengt Goggins, Michael and Gokgoz, Nalan Goldstein, Alisa M. Gorlick, Richard Gross, Myron Grubb, III, Robert Gu, Jian Guan, Peng Gunter, Marc Guo, Huan Habermann, Thomas M. Haiman, Christopher A. and Halai, Dina Hallmans, Goran Hassan, Manal Hattinger, Claudia He, Qincheng He, Xingzhou Helzlsouer, Kathy and Henderson, Brian Henriksson, Roger Hjalgrim, Henrik and Hoffman-Bolton, Judith Hohensee, Chancellor Holford, Theodore R. and Holly, Elizabeth A. Hong, Yun-Chul Hoover, Robert N. and Horn-Ross, Pamela L. Hosain, G. M. Monawar Hosgood, III, H. Dean and Hsiao, Chin-Fu Hu, Nan Hu, Wei Hu, Zhibin Huang, Ming-Shyan Huerta, Jose-Maria Hung, Jen-Yu Hutchinson, Amy and Inskip, Peter D. Jackson, Rebecca D. Jacobs, Eric J. and Jenab, Mazda Jeon, Hyo-Sung Ji, Bu-Tian Jin, Guangfu and Jin, Li Johansen, Christoffer Johnson, Alison Jung, Yoo Jin and Kaaks, Rudolph Kamineni, Aruna Kane, Eleanor Kang, Chang Hyun Karagas, Margaret R. Kelly, Rachel S. Khaw, Kay-Tee and Kim, Christopher Kim, Hee Nam Kim, Jin Hee Kim, Jun Suk and Kim, Yeul Hong Kim, Young Tae Kim, Young-Chul Kitahara, Cari M. Klein, Alison P. Klein, Robert J. Kogevinas, Manolis and Kohno, Takashi Kolonel, Laurence N. Kooperberg, Charles and Kricker, Anne Krogh, Vittorio Kunitoh, Hideo Kurtz, Robert C. Kweon, Sun-Seog LaCroix, Andrea Lawrence, Charles and Lecanda, Fernando Lee, Victor Ho Fun Li, Donghui Li, Haixin and Li, Jihua Li, Yao-Jen Li, Yuqing Liao, Linda M. and Liebow, Mark Lightfoot, Tracy Lim, Wei-Yen Lin, Chien-Chung and Lin, Dongxin Lindstrom, Sara Linet, Martha S. Link, Brian K. Liu, Chenwei Liu, Jianjun Liu, Li Ljungberg, Boerje Lloreta, Josep Di Lollo, Simonetta Lu, Daru Lund, Eiluv Malats, Nuria Mannisto, Satu Le Marchand, Loic and Marina, Neyssa Masala, Giovanna Mastrangelo, Giuseppe and Matsuo, Keitaro Maynadie, Marc Mckay, James McKean-Cowdin, Roberta Melbye, Mads Melin, Beatrice S. Michaud, Dominique S. Mitsudomi, Tetsuya Monnereau, Alain Montalvan, Rebecca and Moore, Lee E. Mortensen, Lotte Maxild Nieters, Alexandra and North, Kari E. Novak, Anne J. Oberg, Ann L. Offit, Kenneth and Oh, In-Jae Olson, Sara H. Palli, Domenico Pao, William and Park, In Kyu Park, Jae Yong Park, Kyong Hwa and Patino-Garcia, Ana Pavanello, Sofia Peeters, Petra H. M. and Perng, Reury-Perng Peters, Ulrike Petersen, Gloria M. Picci, Piero Pike, Malcolm C. Porru, Stefano Prescott, Jennifer and Prokunina-Olsson, Ludmila Qian, Biyun Qiao, You-Lin Rais, Marco Riboli, Elio Riby, Jacques Risch, Harvey A. and Rizzato, Cosmeri Rodabough, Rebecca Roman, Eve Roupret, Morgan Ruder, Avima M. de Sanjose, Silvia Scelo, Ghislaine and Schned, Alan Schumacher, Fredrick Schwartz, Kendra and Schwenn, Molly Scotlandi, Katia Seow, Adeline Serra, Consol and Serra, Massimo Sesso, Howard D. Setiawan, Veronica Wendy and Severi, Gianluca Severson, Richard K. Shanafelt, Tait D. and Shen, Hongbing Shen, Wei Shin, Min-Ho Shiraishi, Kouya and Shu, Xiao-Ou Siddiq, Afshan Sierrasesumaga, Luis Sihoe, Alan Dart Loon Skibola, Christine F. Smith, Alex Smith, Martyn T. and Southey, Melissa C. Spinelli, John J. Staines, Anthony and Stampfer, Meir Stern, Marianna C. Stevens, Victoria L. and Stolzenberg-Solomon, Rachael S. Su, Jian Su, Wu-Chou Sund, Malin Sung, Jae Sook Sung, Sook Whan Tan, Wen Tang, Wei and Tardon, Adonina Thomas, David Thompson, Carrie A. and Tinker, Lesley F. Tirabosco, Roberto Tjonneland, Anne and Travis, Ruth C. Trichopoulos, Dimitrios Tsai, Fang-Yu Tsai, Ying-Huang Tucker, Margaret Turner, Jenny Vajdic, Claire M. and Vermeulen, Roel C. H. Villano, Danylo J. Vineis, Paolo and Virtamo, Jarmo Visvanathan, Kala Wactawski-Wende, Jean Wang, Chaoyu Wang, Chih-Liang Wang, Jiu-Cun Wang, Junwen Wei, Fusheng Weiderpass, Elisabete Weiner, George J. Weinstein, Stephanie Wentzensen, Nicolas White, Emily Witzig, Thomas E. and Wolpin, Brian M. Wong, Maria Pik Wu, Chen Wu, Guoping and Wu, Junjie Wu, Tangchun Wu, Wei Wu, Xifeng Wu, Yi-Long Wunder, Jay S. Xiang, Yong-Bing Xu, Jun Xu, Ping and Yang, Pan-Chyr Yang, Tsung-Ying Ye, Yuanqing Yin, Zhihua and Yokota, Jun Yoon, Ho-Il Yu, Chong-Jen Yu, Herbert and Yu, Kai Yuan, Jian-Min Zelenetz, Andrew Zeleniuch-Jacquotte, Anne Zhang, Xu-Chao Zhang, Yawei Zhao, Xueying Zhao, Zhenhong Zheng, Hong Zheng, Tongzhang Zheng, Wei Zhou, Baosen Zhu, Meng Zucca, Mariagrazia Boca, Simina M. and Cerhan, James R. Ferri, Giovanni M. Hartge, Patricia Hsiung, Chao Agnes Magnani, Corrado Miligi, Lucia Morton, Lindsay M. and Smedby, Karin E. Teras, Lauren R. Vijai, Joseph Wang, Sophia S. Brennan, Paul Caporaso, Neil E. Hunter, David J. and Kraft, Peter Rothman, Nathaniel Silverman, Debra T. and Slager, Susan L. Chanock, Stephen J. Chatterjee, Nilanjan
- Abstract
Background: Studies of related individuals have consistently demonstrated notable familial aggregation of cancer. We aim to estimate the heritability and genetic correlation attributable to the additive effects of common single-nucleotide polymorphisms (SNPs) for cancer at 13 anatomical sites. Methods: Between 2007 and 2014, the US National Cancer Institute has generated data from genome-wide association studies (GWAS) for 49 492 cancer case patients and 34 131 control patients. We apply novel mixed model methodology (GCTA) to this GWAS data to estimate the heritability of individual cancers, as well as the proportion of heritability attributable to cigarette smoking in smoking-related cancers, and the genetic correlation between pairs of cancers. Results: GWAS heritability was statistically significant at nearly all sites, with the estimates of array-based heritability, h(l)(2), on the liability threshold (LT) scale ranging from 0.05 to 0.38. Estimating the combined heritability of multiple smoking characteristics, we calculate that at least 24% (95% confidence interval [CI] = 14% to 37%) and 7% (95% CI = 4% to 11%) of the heritability for lung and bladder cancer, respectively, can be attributed to genetic determinants of smoking. Most pairs of cancers studied did not show evidence of strong genetic correlation. We found only four pairs of cancers with marginally statistically significant correlations, specifically kidney and testes (rho = 0.73, SE = 0.28), diffuse large B-cell lymphoma (DLBCL) and pediatric osteosarcoma (rho = 0.53, SE = 0.21), DLBCL and chronic lymphocytic leukemia (CLL) (rho = 0.51, SE = 0.18), and bladder and lung (rho = 0.35, SE = 0.14). Correlation analysis also indicates that the genetic architecture of lung cancer differs between a smoking population of European ancestry and a nonsmoking Asian population, allowing for the possibility that the genetic etiology for the same disease can vary by population and environmental exposures. Conclusion: Our results provide important insights into the genetic architecture of cancers and suggest new avenues for investigation.
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- 2015
43. 758 Transcriptome Sequencing Identifies Potentially Functional Gene Fusions in Esophageal Adenocarcinomas
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Prasad G. Iyer, Marcia I. Canto, Apoorva K. Chandar, Srividya Venkitachalam, Vinay Varadan, Nicholas J. Shaheen, Kishore Guda, Yu Shyr, Jean Wang, Joseph Willis, Jill S. Barnholtz-Sloan, Ann Marie Kieber-Emmons, Sanford D. Markowitz, Yan Guo, Amitabh Chak, Lakshmeswari Ravi, and Andrew Blum
- Subjects
Hepatology ,Gastroenterology ,Functional genes ,Computational biology ,Biology ,Bioinformatics ,Transcriptome Sequencing - Published
- 2016
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44. A Cellular Mechanism for Prepulse Inhibition
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Jean Wang, William N. Frost, Donna L. Mongeluzi, Li-Ming Tian, and Travis A. Hoppe
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Neurons ,Reflex, Startle ,Neuroscience(all) ,General Neuroscience ,Presynaptic inhibition ,Neural Inhibition ,Stimulus (physiology) ,Inhibitory postsynaptic potential ,Afferent Neurons ,Cellular mechanism ,Sensory input ,Postsynaptic inhibition ,Mollusca ,Synapses ,Animals ,Nerve Net ,Psychology ,Neuroscience ,Prepulse inhibition - Abstract
In prepulse inhibition (PPI), startle responses to sudden, unexpected stimuli are markedly attenuated if immediately preceded by a weak stimulus of almost any modality. This experimental paradigm exposes a potent inhibitory process, present in nervous systems from invertebrates to humans, that is widely considered to play an important role in reducing distraction during the processing of sensory input. The neural mechanisms mediating PPI are of considerable interest given evidence linking PPI deficits with some of the cognitive disorders of schizophrenia. Here, in the marine mollusk Tritonia diomedea , we describe a detailed cellular mechanism for PPI—a combination of presynaptic inhibition of startle afferent neurons together with distributed postsynaptic inhibition of several downstream interneuronal sites in the startle circuit.
- Published
- 2003
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45. Abstract 1309: Association between insulin resistance and breast cancer risk: A Mendelian randomization analysis of data from 228,000 women of European descent
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Wei Zheng, Douglas F. Easton, Xiao-Ou Shu, Jacques Simard, Joe Dennis, Xiang Shu, Jean Wang, Kyriaki Michailidou, Lang Wu, Manjeet K. Bolla, and Nikhil K. Khankari
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Cancer ,Mendelian Randomization Analysis ,Odds ratio ,Type 2 diabetes ,medicine.disease ,Bioinformatics ,Breast cancer ,Insulin resistance ,Internal medicine ,Mendelian randomization ,medicine ,business ,Proinsulin - Abstract
Background: Epidemiologic studies suggest that insulin resistance may be associated with breast cancer risk. We conducted Mendelian randomization (MR) analyses to reduce the biases associated with previous studies and provide evidence for causal inference. Materials and Methods: We used genetic variants identified in genome-wide association studies for circulating fasting insulin (15 variants), early insulin secretion (16 variants), fasting proinsulin (8 variants), fasting glucose (35 variants), and 2-hour glucose (8 variants) as instruments in MR analyses. To reduce possible pleiotropic effects, variants associated with obesity were removed from the instruments. We first evaluated the association of these instruments with type 2 diabetes risk in 110,452 subjects to assess instrument validity. We then investigated the association of these instruments with breast cancer risk using data obtained from 122,977 cases and 105,974 controls of European descent included in the Breast Cancer Association Consortium (BCAC). Odds ratios (OR) were calculated to measure the associations of instrumental variables with risk of overall breast cancer and its subtypes defined by estrogen-receptor [ER] status. Results: All instrumental variables constructed for this study were strongly associated with type 2 diabetes risk with ORs of 3.01 (p=7.86x10-5), 0.22 (p=3.54x10-14), 1.90 (p=8.28x10-4), 6.11 (p=3.59x10-19), and 1.91 (p=6.8x10-16) for per unit increase of fasting insulin, early insulin secretion, fasting proinsulin, fasting glucose, and 2-hour glucose levels, respectively. Statistically significant associations with overall breast cancer risk were found for fasting insulin (OR=1.36 for per unit increase, 95% CI=1.09-1.70, p=0.011) and fasting proinsulin (OR=1.21, 95% CI=1.06- 1.38, p=0.011). These associations were observed only for ER-positive breast cancer. No statistically significant association at p Conclusions: Our study provides strong support that certain insulin resistance traits may be causally associated with risk of breast cancer, particularly ER-positive breast cancer. Citation Format: Xiang Shu, Lang Wu, Nikhil K. Khankari, Kyriaki Michailidou, Manjeet K. Bolla, Jean Wang, Joe Dennis, Xiao-ou Shu, Jacques Simard, Douglas F. Easton, Wei Zheng. Association between insulin resistance and breast cancer risk: A Mendelian randomization analysis of data from 228,000 women of European descent [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 1309. doi:10.1158/1538-7445.AM2017-1309
- Published
- 2017
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46. Signaling Adaptor Protein SH2B1 Enhances Neurite Outgrowth and Accelerates the Maturation of Human Induced Neurons
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Chia-Hsiang Chen, Su-Liang Chen, Hwei-Hsien Chen, Yi-Chao Hsu, Dan-Yen Wang, Ya-Jean Wang, Ing-Ming Chiu, Yun-Hsiang Chen, and Linyi Chen
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Time Factors ,Neurite ,Genotype ,Neurogenesis ,Induced Pluripotent Stem Cells ,Action Potentials ,Nerve Tissue Proteins ,Regenerative Medicine ,Transfection ,Neural Stem Cells ,Neurites ,Humans ,Enabling Technologies for Cell-Based Clinical Translation ,Induced pluripotent stem cell ,Cell Shape ,Cells, Cultured ,Adaptor Proteins, Signal Transducing ,Homeodomain Proteins ,Neurons ,biology ,Signal transducing adaptor protein ,Cell Biology ,General Medicine ,Synapsin ,Cellular Reprogramming ,Neural stem cell ,Cell biology ,Phenotype ,nervous system ,POU Domain Factors ,biology.protein ,NeuN ,Reprogramming ,Biomarkers ,Developmental Biology ,Transcription Factors - Abstract
Recent advances in somatic cell reprogramming have highlighted the plasticity of the somatic epigenome, particularly through demonstrations of direct lineage reprogramming of adult mouse and human fibroblasts to induced pluripotent stem cells (iPSCs) and induced neurons (iNs) under defined conditions. However, human cells appear to be less plastic and have a higher epigenetic hurdle for reprogramming to both iPSCs and iNs. Here, we show that SH2B adaptor protein 1β (SH2B1) can enhance neurite outgrowth of iNs reprogrammed from human fibroblasts as early as day 14, when combined with miR124 and transcription factors BRN2 and MYT1L (IBM) under defined conditions. These SH2B1-enhanced iNs (S-IBM) showed canonical neuronal morphology, and expressed multiple neuronal markers, such as TuJ1, NeuN, and synapsin, and functional proteins for neurotransmitter release, such as GABA, vGluT2, and tyrosine hydroxylase. Importantly, SH2B1 accelerated mature process of functional neurons and exhibited action potentials as early as day 14; without SH2B1, the IBM iNs do not exhibit action potentials until day 21. Our data demonstrate that SH2B1 can enhance neurite outgrowth and accelerate the maturation of human iNs under defined conditions. This approach will facilitate the application of iNs in regenerative medicine and in vitro disease modeling.
- Published
- 2014
47. Genetic variation at CYP3A is associated with age at menarche and breast cancer risk: a case-control study
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Xianshu Wang, Susan L. Slager, Bernardo Bonanni, Katarzyna Durda, Sze Yee Phuah, M. Pilar Zamora, Dong Young Noh, Gillian S. Dite, Chiun-Sheng Huang, Lorna Gibson, Argyrios Ziogas, Artitaya Lophatananon, Pascal Guénel, Valeria Pensotti, Vernon S. Pankratz, Graham G. Giles, Anna H. Wu, Natalia Antonenkova, Daniel Vincent, Antoinette Hollestelle, Malcolm W.R. Reed, Hans Ulrich Ulmer, Vesa Kataja, Dieter Flesch-Janys, Hermann Brenner, Hui Miao, Nichola Johnson, Rita K. Schmutzler, Francois Bacot, Hans Wildiers, Thilo Dörk, Mark S. Goldberg, Julian Peto, Thomas Rüdiger, Cox A, Børge G. Nordestgaard, Patrick Neven, Vessela N. Kristensen, Barbara Burwinkel, David Van Den Berg, Craig Luccarini, Joe Dennis, Emilie Cordina, Dominiek Smeets, Natalia Bogdanova, Jaana M. Hartikainen, Stefan Nickels, Jean Wang, Kyriaki Michailidou, Henrik Flyger, Daniel C. Tessier, Paolo Radice, Stephen J. Chanock, Mark E. Sherman, Arif B. Ekici, Matthias W. Beckmann, William Blot, Daehee Kang, Christopher A. Haiman, Florence Menegaux, Gianluca Severi, Mervi Grip, Ben P. Haynes, Melissa C. Southey, Simon S. Cross, Montserrat Garcia-Closas, Mitch Dowsett, Jenny Chang-Claude, Drakoulis Yannoukakos, Celine M. Vachon, Isabel dos Santos Silva, Elinor J. Sawyer, Katri Pylkäs, Cheng Har Yip, Joerg Heil, Manjeet K. Bolla, Heiko Müller, Jyh Cherng Yu, Janet E. Olson, Wei Zheng, Carl Blomqvist, Yon Ko, Minouk J. Schoemaker, Christof Sohn, Ming-Feng Hou, Anna González-Neira, Ian Tomlinson, Thérèse Truong, Diether Lambrechts, Mikael Hartman, Douglas F. Easton, Chen-Yang Shen, Andreas Schneeweiss, Javier Benitez, Amanda E. Toland, Anna Marie Mulligan, Jacques Simard, Suleeporn Sangrajrang, Robert Winqvist, Stig E. Bojesen, Nick Orr, Martine Dumont, Heli Nevanlinna, James McKay, Valerie Gaborieau, Keitaro Matsuo, Christina Clarke Dur, Aida Karina Dieffenbach, Jonathan Beesley, Grethe I. Grenaker Alnæs, Taru A. Muranen, Paolo Peterlongo, Marjanka K. Schmidt, Peter Devillee, Olivia Fletcher, Frederik Marmé, Anna Jakubowska, Paul D.P. Pharoah, Paul Brennan, Jolanta Lissowska, Nils Schoof, Ji Yeob Choi, Hoda Anton-Culver, Femke Atsma, Per Hall, Anja Rudolph, Ian W. Brock, Elizabeth Folkerd, Veli-Matti Kosma, Soo H. Teo, Arto Mannermaa, Chiu-Chen Tseng, Fergus J. Couch, Anne Lise Børresen-Dale, Anthony J. Swerdlow, Hiltrud Brauch, Jose Ignacio Arias Perez, Frank Dudbridge, Lisa B. Signorello, Madeleine M. A. Tilanus-Linthorst, Jonine D. Figueroa, Christina Justenhoven, Ute Hamann, Julia A. Knight, Peter A. Fasching, Alan Ashworth, Stefan P. Renner, Zachary S. Fredericksen, Wei-Yen Lim, Sue K. Park, Annegien Broeks, Georgia Chenevix-Trench, Jan Lubinski, Gord Glendon, Kristiina Aittomäki, Maartje J. Hooning, Jianjun Liu, Volker Arndt, Alfons Meindl, Leslie Bernstein, Laura Baglietto, Mitul Shah, Belinda K. Cornes, John L. Hopper, Penny Soucy, Katarzyna Jaworska-Bieniek, Alison M. Dunning, Claus R. Bartram, Roger L. Milne, Michael Jones, Kenneth Muir, Irene L. Andrulis, Arja Jukkola-Vuorinen, Annika Lindblom, Michael J. Kerin, Nicola Miller, Carmel Apicella, Asta Försti, Anthony Tang, Laura J. van't Veer, Rogier A. Oldenburg, Neurology, Medical Oncology, Clinical Genetics, Surgery, and Cardiothoracic Surgery
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Physiology ,chemistry.chemical_compound ,610 Medical sciences Medicine ,0302 clinical medicine ,Risk Factors ,Medizinische Fakultät ,Genotype ,Cytochrome P-450 CYP3A ,Age of Onset ,Reproductive History ,Medicine(all) ,0303 health sciences ,Age Factors ,twins ,Middle Aged ,3. Good health ,steroid-hormones ,030220 oncology & carcinogenesis ,loci ,Menarche ,Veterinary (all) ,Female ,Research Article ,Adult ,medicine.medical_specialty ,premenopausal women ,Breast Neoplasms ,Estrone ,Single-nucleotide polymorphism ,Polymorphism, Single Nucleotide ,White People ,Healthcare improvement science Radboud Institute for Health Sciences [Radboudumc 18] ,03 medical and health sciences ,Breast cancer ,SDG 3 - Good Health and Well-being ,estradiol ,medicine ,Humans ,Genetic Predisposition to Disease ,ddc:610 ,Genetic Association Studies ,Aged ,030304 developmental biology ,Gynecology ,business.industry ,Case-control study ,medicine.disease ,Clinical research ,Premenopause ,chemistry ,sex-hormone levels ,Cancer and Oncology ,genome-wide association ,Age of onset ,business ,serum - Abstract
Introduction We have previously shown that a tag single nucleotide polymorphism (rs10235235), which maps to the CYP3A locus (7q22.1), was associated with a reduction in premenopausal urinary estrone glucuronide levels and a modest reduction in risk of breast cancer in women age ≤50 years. Methods We further investigated the association of rs10235235 with breast cancer risk in a large case control study of 47,346 cases and 47,570 controls from 52 studies participating in the Breast Cancer Association Consortium. Genotyping of rs10235235 was conducted using a custom Illumina Infinium array. Stratified analyses were conducted to determine whether this association was modified by age at diagnosis, ethnicity, age at menarche or tumor characteristics. Results We confirmed the association of rs10235235 with breast cancer risk for women of European ancestry but found no evidence that this association differed with age at diagnosis. Heterozygote and homozygote odds ratios (ORs) were OR = 0.98 (95% CI 0.94, 1.01; P = 0.2) and OR = 0.80 (95% CI 0.69, 0.93; P = 0.004), respectively (Ptrend = 0.02). There was no evidence of effect modification by tumor characteristics. rs10235235 was, however, associated with age at menarche in controls (Ptrend = 0.005) but not cases (Ptrend = 0.97). Consequently the association between rs10235235 and breast cancer risk differed according to age at menarche (Phet = 0.02); the rare allele of rs10235235 was associated with a reduction in breast cancer risk for women who had their menarche age ≥15 years (ORhet = 0.84, 95% CI 0.75, 0.94; ORhom = 0.81, 95% CI 0.51, 1.30; Ptrend = 0.002) but not for those who had their menarche age ≤11 years (ORhet = 1.06, 95% CI 0.95, 1.19, ORhom = 1.07, 95% CI 0.67, 1.72; Ptrend = 0.29). Conclusions To our knowledge rs10235235 is the first single nucleotide polymorphism to be associated with both breast cancer risk and age at menarche consistent with the well-documented association between later age at menarche and a reduction in breast cancer risk. These associations are likely mediated via an effect on circulating hormone levels.
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- 2014
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48. Swim Initiation Neurons in Tritonia diomedea1
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William N. Frost, Travis A. Hoppe, L.-M. Tian, and Jean Wang
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Tritonia (gastropod) ,Interneuron ,Central pattern generator ,Motor program ,Anatomy ,Biology ,biology.organism_classification ,Afferent Neurons ,medicine.anatomical_structure ,nervous system ,Command neuron ,Afferent ,medicine ,Excitatory postsynaptic potential ,General Earth and Planetary Sciences ,Neuroscience ,General Environmental Science - Abstract
SYNOPSIS. Two groups of interneurons, Tr1 and DRI, have been identified in the escape swim circuit of the marine mollusc Tritonia diomedea that have important roles in behavioral initiation. DRI functions as a command neuron, receiving direct excitatory input from the afferent neurons, and in turn directly exciting the DSI neurons of the central pattern generator. DRI fires throughout the swim motor program, and activity in DRI is both necessary and sufficient for sensory input to elicit the swim motor program. Tr1 is an excitatory interneuron that fires briefly in response to sensory input and then remains silent during the motor program. Tr1 excites DRI with an excitatory connection that has fast and slow components and thus appears to have a role in converting brief afferent neuron activity to long-lasting firing in downstream circuit elements. These neurons complete the description of a continuous synaptic pathway from afferent to flexion neurons in the Tritonia swim circuit. Their identification should facilitate studies of motor program initiation, as well as of how various forms of experience, including simple forms of learning, act to influence neuronal decision-making processes.
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- 2001
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49. Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: A genome-wide interaction study
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Florence Menegaux, Gord Glendon, Graham G. Giles, Penny Webb, Kamila Czene, Jean Wang, Irene L. Andrulis, Per Hall, Melissa C. Southey, Emilie Cordina-Duverger, Jonine D. Figueroa, Julia A. Knight, Jenny Chang-Claude, Alan Ashworth, Janet E. Olson, Fergus J. Couch, Manjeet K. Bolla, Gianluca Severi, Nick Orr, Thérèse Truong, Anna Marie Mulligan, Volker Harth, Pascal Guénel, Lars Beckmann, Hatef Darabi, Laura Baglietto, Dieter Flesch-Janys, Hiltrud Brauch, Hugues Aschard, Jianjun Liu, Georgia Chenevix-Trench, David J. Hunter, Sabine Behrens, Keith Humpreys, Minouk J. Schoemaker, Montserrat Garcia-Closas, Thomas Brüning, Celine M. Vachon, Peter Kraft, Anja Rudolph, Kristen N. Stevens, Sara Lindström, Anthony J. Swerdlow, Heli Nevanlinna, Jolanta Lissowska, Rebecca Hein, Douglas F. Easton, Mikael Eriksson, Stephen J. Chanock, Program in Genetic Epidemiology and Statistical Genetics (PGESG - BOSTON), Harvard School of Public Health, Division of Cancer Epidemiology, German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), Saw Swee Hock School of Public Health, National University of Singapore (NUS), Cancer Research UK Cambridge Institute [Cambridge, Royaume-Uni] (CRUK), University of Cambridge [UK] (CAM), Centre de recherche en épidémiologie et santé des populations (CESP), and Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Paris-Sud - Paris 11 (UP11)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)
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Oncology ,Cancer Research ,Endocrinology, Diabetes and Metabolism ,Genome-wide association study ,Bioinformatics ,0302 clinical medicine ,Breast cancer ,Endocrinology ,MESH: Carcinoma, Lobular ,MESH: Risk Factors ,Polymorphism (computer science) ,Risk Factors ,Genome-wide ,Modifier ,[STAT.AP]Statistics [stat]/Applications [stat.AP] ,0303 health sciences ,Tumor ,MESH: Polymorphism, Single Nucleotide ,MESH: Hormone Replacement Therapy ,MESH: Genetic Predisposition to Disease ,Single Nucleotide ,Prognosis ,MESH: Case-Control Studies ,Diabetes and Metabolism ,030220 oncology & carcinogenesis ,MESH: Genes, Modifier ,Female ,MESH: Biomarkers, Tumor ,[STAT.ME]Statistics [stat]/Methodology [stat.ME] ,Menopausal hormone therapy ,medicine.medical_specialty ,Hormone Replacement Therapy ,Single-nucleotide polymorphism ,Breast Neoplasms ,Biology ,Polymorphism, Single Nucleotide ,MESH: Prognosis ,Article ,Lobular ,03 medical and health sciences ,Meta-Analysis as Topic ,Internal medicine ,Biomarkers, Tumor ,medicine ,SNP ,Humans ,MESH: Meta-Analysis as Topic ,Genetic Predisposition to Disease ,Genetic variation ,Polymorphism ,030304 developmental biology ,Genetic association ,MESH: Humans ,Genes, Modifier ,Haplotype ,Carcinoma ,Case-control study ,medicine.disease ,Carcinoma, Lobular ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Genes ,Case-Control Studies ,Genome-Wide Association Study ,MESH: Genome-Wide Association Study ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,MESH: Female ,MESH: Breast Neoplasms ,Biomarkers - Abstract
Women using menopausal hormone therapy (MHT) are at increased risk of developing breast cancer (BC). To detect genetic modifiers of the association between current use of MHT and BC risk, we conducted a meta-analysis of four genome-wide case-only studies followed by replication in 11 case–control studies. We used a case-only design to assess interactions between single-nucleotide polymorphisms (SNPs) and current MHT use on risk of overall and lobular BC. The discovery stage included 2920 cases (541 lobular) from four genome-wide association studies. The top 1391 SNPs showingPvalues for interaction (Pint) −3were selected for replication using pooled case–control data from 11 studies of the Breast Cancer Association Consortium, including 7689 cases (676 lobular) and 9266 controls. Fixed-effects meta-analysis was used to derive combinedPint. No SNP reached genome-wide significance in either the discovery or combined stage. We observed effect modification of current MHT use on overall BC risk by two SNPs on chr13 nearPOMP(combinedPint≤8.9×10−6), two SNPs inSLC25A21(combinedPint≤4.8×10−5), and three SNPs inPLCG2(combinedPint≤4.5×10−5). The association between lobular BC risk was potentially modified by one SNP inTMEFF2(combinedPint≤2.7×10−5), one SNP inCD80(combinedPint≤8.2×10−6), three SNPs on chr17 nearTMEM132E(combinedPint≤2.2×10−6), and two SNPs on chr18 nearSLC25A52(combinedPint≤4.6×10−5). In conclusion, polymorphisms in genes related to solute transportation in mitochondria, transmembrane signaling, and immune cell activation are potentially modifying BC risk associated with current use of MHT. These findings warrant replication in independent studies.
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- 2013
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50. 840 Combining GWAS With Linkage Analysis Identifies a SNP Associated With Barrett's Esophagus And Esophageal Adenocarcinoma
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Lynn Onstad, Thomas L. Vaughan, Gary W. Falk, Nicholas J. Shaheen, Julian A. Abrams, Robert C. Elston, Jean Wang, Marcia I. Canto, Amitabh Chak, William M. Grady, Prasad G. Iyer, and Xiangqing Sun
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Oncology ,medicine.medical_specialty ,Hepatology ,business.industry ,Gastroenterology ,Esophageal adenocarcinoma ,Genome-wide association study ,medicine.disease ,Genetic linkage ,Barrett's esophagus ,Internal medicine ,medicine ,SNP ,business - Published
- 2016
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