1. DNA demethylation is associated with malignant progression of lower-grade gliomas
- Author
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Yoshihiro Muragaki, Mayu Omata, Nobuhito Saito, Motoo Nagane, Yosuke Kitagawa, Ryohei Otani, Fumi Higuchi, Genta Nagae, Taishi Nakamura, Takahide Nejo, Taijun Hana, Koki Aihara, Ryo Nishikawa, Hiroki Ueda, Keisuke Ueki, Hiroyuki Aburatani, Masashi Nomura, Satoshi Takahashi, Shogo Yamamoto, Akitake Mukasa, Shiro Fukuda, Yoshitaka Narita, Kenji Tatsuno, Shota Tanaka, Shunsaku Takayanagi, Takayoshi Umeda, and Kuniaki Saito
- Subjects
0301 basic medicine ,Oncogene Proteins, Fusion ,lcsh:Medicine ,Cell Cycle Proteins ,Kaplan-Meier Estimate ,Biology ,Article ,Malignant transformation ,03 medical and health sciences ,0302 clinical medicine ,Glioma ,medicine ,Humans ,Promoter Regions, Genetic ,lcsh:Science ,neoplasms ,Demethylation ,Multidisciplinary ,CpG Island Methylator Phenotype ,Brain Neoplasms ,lcsh:R ,RNA-Binding Proteins ,Methylation ,medicine.disease ,Publisher Correction ,Isocitrate Dehydrogenase ,Up-Regulation ,DNA Demethylation ,030104 developmental biology ,DNA demethylation ,CpG site ,Mutation ,DNA methylation ,Disease Progression ,Cancer research ,CpG Islands ,lcsh:Q ,Neoplasm Grading ,030217 neurology & neurosurgery - Abstract
To elucidate the mechanisms of malignant progression of lower-grade glioma, molecular profiling using methylation array, whole-exome sequencing, and RNA sequencing was performed for 122, 36 and 31 gliomas, respectively. This cohort included 24 matched pairs of initial lower-grade gliomas and recurrent tumors, most of which showed malignant progression. Nearly half of IDH-mutant glioblastomas that had progressed from lower-grade gliomas exhibited characteristic partial DNA demethylation in previously methylated genomic regions of their corresponding initial tumors, which had the glioma CpG island methylator phenotype (G-CIMP). In these glioblastomas, cell cycle-related genes, RB and PI3K-AKT pathway genes were frequently altered. Notably, late-replicating domain was significantly enriched in the demethylated regions that were mostly located in non-regulatory regions, suggesting that the loss of DNA methylation during malignant transformation may involve mainly passive demethylation due to a delay in maintenance of methylation during accelerated cell division. Nonetheless, a limited number of genes including IGF2BP3, which potentially drives cell proliferation, were presumed to be upregulated due to demethylation of their promoter. Our data indicated that demethylation of the G-CIMP profile found in a subset of recurrent gliomas reflects accelerated cell divisions accompanied by malignant transformation. Oncogenic genes activated by such epigenetic change represent potential therapeutic targets.
- Published
- 2019