31 results on '"Loo VG"'
Search Results
2. Comparison of rectal swabs and fecal samples for the detection of Clostridioides difficile infections with a new in-house PCR assay.
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Huletsky A, Loo VG, Longtin Y, Longtin J, Trottier S, Tremblay CL, Gilca R, Lavallée C, Brochu É, Bérubé È, Bastien M, Bernier M, Gagnon M, Frenette J, Bestman-Smith J, Deschênes L, and Bergeron MG
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- Humans, Female, Male, Aged, Middle Aged, Specimen Handling methods, Adult, Aged, 80 and over, Feces microbiology, Clostridioides difficile isolation & purification, Clostridioides difficile genetics, Clostridium Infections diagnosis, Clostridium Infections microbiology, Polymerase Chain Reaction methods, Rectum microbiology, Sensitivity and Specificity
- Abstract
The detection of Clostridioides difficile infections (CDI) relies on testing the stool of patients by toxin antigen detection or PCR methods. Although PCR and antigenic methods have significantly reduced the time to results, delays in stool collection can significantly add to the turnaround time. The use of rectal swabs to detect C. difficile could considerably reduce the time to diagnosis of CDI. We developed a new rapid PCR assay for the detection of C. difficile and evaluated this PCR assay on both stool and rectal swab specimens. We recruited a total of 623 patients suspected of C. difficile infection. Stool samples and rectal swabs were collected from each patient and tested by our PCR assay. Stool samples were also tested by the cell cytotoxicity neutralization assay (CCNA) as a reference. The PCR assay detected C. difficile in 60 stool specimens and 61 rectal swabs for the 64 patients whose stool samples were positive for C. difficile by CCNA. The PCR assay detected an additional 35 and 36 stool and rectal swab specimens positive for C. difficile , respectively, for sensitivity with stools and rectal swabs of 93.8% and 95.3%, specificity of 93.7% and 93.6%, positive predictive values of 63.2% and 62.9%, and negative predictive values of 99.2% and 99.4%. Detection of C. difficile using PCR on stools or rectal swabs yielded reliable and similar results. The use of PCR tests on rectal swabs could reduce turnaround time for CDI detection, thus improving CDI management and control of C. difficile transmission., Importance: Clostridioides difficile infection (CDI) is the leading cause of healthcare-associated diarrhea, resulting in high morbidity, mortality, and economic burden. In clinical laboratories, CDI testing is currently performed on stool samples collected from patients with diarrhea. However, the diagnosis of CDI can be delayed by the time required to collect stool samples. Barriers to sample collection could be overcome by using a rectal swab instead of a stool sample. Our study showed that CDI can be identified rapidly and reliably by a new PCR assay developed in our laboratory on both stool and rectal swab specimens. The use of PCR tests on rectal swabs could reduce the time for the detection of CDI and improve the management of this infection. It should also provide a useful alternative for infection-control practitioners to better control the spread of C. difficile ., Competing Interests: The authors declare no conflict of interest.
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- 2024
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3. The changing epidemiology of Clostridioides difficile infection and the NAP1/027 strain in two Québec hospitals: a 17-year time-series study.
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Couture S, Frenette C, Schiller I, Alfaro R, Dendukuri N, Thirion D, Longtin Y, and Loo VG
- Abstract
Objective: To describe the epidemiology of healthcare-associated Clostridioides difficile infection (HA-CDI) in two Québec hospitals in Canada following the 2003 epidemic and to evaluate the impact of antibiotic stewardship on the incidence of HA-CDI and the NAP1/027 strain., Design: Time-series analysis., Setting: Two Canadian tertiary care hospitals based in Montréal, Québec., Patients: Patients with a positive assay for toxigenic C. difficile were identified through infection control surveillance. All cases of HA-CDI, defined as symptoms occurring after 72 hours of hospital admission or within 4 weeks of hospitalization, were included., Methods: The incidence of HA-CDI and antibiotic utilization from 2003 to 2020 were analyzed with available C. difficile isolates. The impact of antibiotic utilization on HA-CDI incidence was estimated by a dynamic regression time-series model. Antibiotic utilization and the proportion of NAP1/027 strains were compared biannually for available isolates from 2010 to 2020., Results: The incidence of HA-CDI decreased between 2003 and 2020 at both hospitals from 26.5 cases per 10,000 patient-days in 2003 to 4.9 cases per 10,000 patient-days in 2020 respectively. Over the study period, there were an increase in the utilization of third-generation cephalosporins and a decrease in usage of fluoroquinolones and clindamycin. A decrease in fluoroquinolone utilization was associated with a significant decrease in HA-CDI incidence as well as decrease in the NAP1/027 strain by approximately 80% in both hospitals., Conclusions: Decreased utilization of fluoroquinolones in two Québec hospitals was associated with a decrease in the incidence of HA-CDI and a genotype shift from NAP1/027 to non-NAP1/027 strains., Competing Interests: YL received salary support from the Fonds de Recherche du Québec outside of this work. VGL received consulting fees from Ferring Inc., Merck Inc., and Xediton Pharmaceuticals Inc. outside of this work. All other authors report no competing interests., (© The Author(s) 2024.)
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- 2024
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4. Diagnostic yield of serial SARS-CoV-2 testing in hospitalized patients.
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Li J, Frenette C, and Loo VG
- Abstract
Background: The detection rate of SARS-CoV-2 by polymerase chain reaction (PCR) varies depending on the time since exposure and is highest around the time of symptom onset. It is conceivable that patients who are incubating SARS-CoV-2 may screen negative at admission and develop transmissible but undetected asymptomatic or pre-symptomatic disease while in hospital. The incidence of COVID-19 in Montreal, Canada started to increase in December 2020. In anticipation of a much larger rise after the holiday period, the McGill University Health Centre implemented serial SARS-CoV-2 testing for all admitted patients on day 5 and 10 after admission, to evaluate the clinical utility of serial SARS-CoV-2 testing among patients who test negative on admission screening., Methods: We retrospectively analyzed the diagnostic yield of SARS-CoV-2 serial testing for patients admitted between January 4, 2021 and April 30, 2021., Results: A total of 1,505 patients underwent serial testing at day 5 and 841 patients underwent serial testing at day 10. Only 10 patients were positive on serial testing at day 5 and only 12 patients were positive on serial testing at day 10, for a yield at day 5 and day 10 of 0.7% and 1.4%, respectively., Conclusions: The yield of serial SARS-CoV-2 testing was 0.7% at day 5 and 1.4% at day 10. We found that the yield of serial testing was higher when the community incidence was higher and could be considered in this situation. Policies which target repeat testing towards symptomatic or exposed individuals appear to be effective in identifying those with a positive test while admitted but testing negative upon admission., (Copyright © 2022, Association of Medical Microbiology and Infectious Disease Canada (AMMI Canada).)
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- 2022
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5. Detection of Free Toxin B in the Stool of Asymptomatic Clostridioides difficile Carriers by the Cell Cytotoxicity Neutralization Assay.
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Schweitzer L, Gervais P, Paquet-Bolduc B, Loo VG, and Longtin Y
- Abstract
Cell cytotoxicity neutralization assay (CCNA) is considered to be a gold standard to diagnose Clostridioides difficile infections. We performed CCNA on 77 consecutive admission screening rectal swabs from asymptomatic toxigenic C. difficile carriers. Thirty-nine percent of specimens from asymptomatic carriers were positive. Thus, CCNA specificity may be lower than previously thought., (© The Author(s) 2021. Published by Oxford University Press on behalf of Infectious Diseases Society of America.)
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- 2021
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6. Fecal host biomarkers predicting severity of Clostridioides difficile infection.
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Golizeh M, Winter K, Roussel L, Landekic M, Langelier M, Loo VG, Ndao M, and Vinh DC
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- Aged, Animals, Case-Control Studies, Clostridioides difficile isolation & purification, Cohort Studies, Disease Models, Animal, Feces microbiology, Female, Humans, Male, Matrix Metalloproteinase 7 analysis, Mice, Mice, Inbred C57BL, Middle Aged, Pregnancy-Associated alpha 2-Macroglobulins analysis, Severity of Illness Index, alpha 1-Antitrypsin analysis, Biomarkers analysis, Clostridium Infections diagnosis, Clostridium Infections metabolism, Feces chemistry
- Abstract
Clostridioides difficile is a major cause of health care-associated diarrhea. Severity ranges from mild to life-threatening, but this variability remains poorly understood. Microbiologic diagnosis of C. difficile infection (CDI) is straightforward but offers little insight into the patient's prognosis or into pathophysiologic determinants of clinical trajectory. The aim of this study was to discover host-derived, CDI-specific fecal biomarkers involved in disease severity. Subjects without and with CDI diarrhea were recruited. CDI severity was based on Infectious Diseases Society of America/Society for Healthcare Epidemiology of America criteria. We developed a liquid chromatography tandem mass spectrometry approach to identify host-derived protein biomarkers from stool and applied it to diagnostic samples for cohort-wise comparison (CDI-negative vs. nonsevere CDI vs. severe CDI). Selected biomarkers were orthogonally confirmed and subsequently verified in a CDI mouse model. We identified a protein signature from stool, consisting of alpha-2-macroglobulin (A2MG), matrix metalloproteinase-7 (MMP-7), and alpha-1-antitrypsin (A1AT), that not only discriminates CDI-positive samples from non-CDI ones but also is potentially associated with disease severity. In the mouse model, this signature with the murine homologs of the corresponding proteins was also identified. A2MG, MMP-7, and A1AT serve as biomarkers in patients with CDI and define novel components of the host response that may determine disease severity.
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- 2021
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7. A Multicenter Study of the Revogene C. difficile System for Detection of the Toxin B Gene from Unformed Stool Specimens.
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Mashock MJ, Faron ML, Carroll KC, Dang C, Lewis S, Salimnia H, Lephart P, Loo VG, Schmitt BH, Young S, Buchan BW, and Ledeboer NA
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- Adolescent, Adult, Canada, Child, Child, Preschool, Clostridium Infections microbiology, Diarrhea microbiology, Humans, Infant, Middle Aged, Retrospective Studies, Sensitivity and Specificity, United States, Young Adult, Bacterial Proteins genetics, Bacterial Toxins genetics, Clostridioides difficile genetics, Clostridium Infections diagnosis, Feces microbiology, Molecular Diagnostic Techniques methods
- Abstract
Clostridioides difficile is the leading cause of diarrhea in hospitalized U.S. patients and results in over 400,000 cases of C. difficile infection per year. C. difficile infections have mortality rates of 6 to 30% and significantly increase health care costs, because of increased length of stay and increased frequency of readmissions due to recurrences. Efforts to reduce the spread of C. difficile in hospitals have led to the development of rapid sensitive diagnostic methods. A multicenter study was performed to establish the performance characteristics of the Revogene C. difficile test (Meridian Bioscience, Cincinnati, OH, USA) for use in detection of the toxin B ( tcdB ) gene from toxigenic C. difficile The Revogene instrument is a new molecular platform that uses real-time PCR to detect nucleic acids in up to 8 specimens at a time. A total of 2,461 specimens from symptomatic patients that had been submitted for C. difficile testing were enrolled at 7 sites throughout the United States and Canada for evaluation of the assay. Each stool specimen was tested for the presence of the tcdB gene using the Revogene C. difficile test, and results were compared with those of the reference method, a combination of direct and enriched culture methods. Overall, the Revogene C. difficile test demonstrated a sensitivity of 85.0% (95% confidence interval, 80% to 88%) and a specificity of 97.2% (95% confidence interval, 96% to 98%). The Revogene C. difficile test, using clinical stool specimens for detection of tcdB in C. difficile , demonstrated acceptable sensitivity and specificity, with a short turnaround time., (Copyright © 2020 Mashock et al.)
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- 2020
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8. The infectious thyroid nodule: a case report of mucormycosis associated with ibrutinib therapy.
- Author
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Mascarella MA, Schweitzer L, Alreefi M, Silver J, Caglar D, Loo VG, Richardson K, Dufresne P, Lee TC, and Sadeghi N
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- Adenine analogs & derivatives, Aged, Cunninghamella isolation & purification, Humans, Immunocompromised Host, Leukemia, Lymphocytic, Chronic, B-Cell complications, Male, Piperidines, Pyrazoles therapeutic use, Pyrimidines therapeutic use, Thyroid Nodule microbiology, Thyroid Nodule pathology, Agammaglobulinaemia Tyrosine Kinase antagonists & inhibitors, Leukemia, Lymphocytic, Chronic, B-Cell drug therapy, Mucormycosis etiology, Pyrazoles adverse effects, Pyrimidines adverse effects, Thyroid Nodule etiology
- Abstract
Background: Acute invasive fungal infections of the head and neck secondary to tyrosine kinase inhibitors are rare and potentially life-threatening events., Case Presentation: We report a case of mucormycosis of the thyroid gland in a patient known for chronic lymphocytic leukemia receiving ibrutinib who presented with a rapidly growing thyroid nodule and dysphonia. An acute invasive fungal infection was identified on a core needle biopsy; mucormycosis was confirmed on culture. The patient was successfully treated with surgical debridement and long-term antifungal therapy., Conclusion: Patients on ibrutinib may be at risk of acute invasive fungal infections of the head and neck.
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- 2019
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9. Understanding Clostridium difficile Colonization.
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Crobach MJT, Vernon JJ, Loo VG, Kong LY, Péchiné S, Wilcox MH, and Kuijper EJ
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- Cross Infection microbiology, Cross Infection transmission, Humans, Risk Factors, Clostridioides difficile growth & development, Clostridium Infections microbiology, Clostridium Infections transmission, Gastrointestinal Tract microbiology
- Abstract
Clostridium difficile is the main causative agent of antibiotic-associated and health care-associated infective diarrhea. Recently, there has been growing interest in alternative sources of C. difficile other than patients with Clostridium difficile infection (CDI) and the hospital environment. Notably, the role of C. difficile -colonized patients as a possible source of transmission has received attention. In this review, we present a comprehensive overview of the current understanding of C. difficile colonization. Findings from gut microbiota studies yield more insights into determinants that are important for acquiring or resisting colonization and progression to CDI. In discussions on the prevalence of C. difficile colonization among populations and its associated risk factors, colonized patients at hospital admission merit more attention, as findings from the literature have pointed to their role in both health care-associated transmission of C. difficile and a higher risk of progression to CDI once admitted. C. difficile colonization among patients at admission may have clinical implications, although further research is needed to identify if interventions are beneficial for preventing transmission or overcoming progression to CDI., (Copyright © 2018 American Society for Microbiology.)
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- 2018
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10. Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.
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Drouin A, Giguère S, Déraspe M, Marchand M, Tyers M, Loo VG, Bourgault AM, Laviolette F, and Corbeil J
- Abstract
Background: The identification of genomic biomarkers is a key step towards improving diagnostic tests and therapies. We present a reference-free method for this task that relies on a k-mer representation of genomes and a machine learning algorithm that produces intelligible models. The method is computationally scalable and well-suited for whole genome sequencing studies., Results: The method was validated by generating models that predict the antibiotic resistance of C. difficile, M. tuberculosis, P. aeruginosa, and S. pneumoniae for 17 antibiotics. The obtained models are accurate, faithful to the biological pathways targeted by the antibiotics, and they provide insight into the process of resistance acquisition. Moreover, a theoretical analysis of the method revealed tight statistical guarantees on the accuracy of the obtained models, supporting its relevance for genomic biomarker discovery., Conclusions: Our method allows the generation of accurate and interpretable predictive models of phenotypes, which rely on a small set of genomic variations. The method is not limited to predicting antibiotic resistance in bacteria and is applicable to a variety of organisms and phenotypes. Kover, an efficient implementation of our method, is open-source and should guide biological efforts to understand a plethora of phenotypes ( http://github.com/aldro61/kover/ ).
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- 2016
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11. A Cluster of Three Cases of Hantavirus Pulmonary Syndrome among Canadian Military Personnel.
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Parkes LO, Nguyen TT, Longtin J, Beaudoin MC, Bestman-Smith J, Vinh DC, Boivin G, and Loo VG
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Hantavirus pulmonary syndrome (HPS) is a rare illness in eastern Canada. We present three cases of HPS among military personnel in Quebec. The three cases shared a common exposure to mouse excreta while engaged in military training in Alberta, a western province of Canada.
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- 2016
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12. Excretion of Host DNA in Feces Is Associated with Risk of Clostridium difficile Infection.
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Vincent C, Mehrotra S, Loo VG, Dewar K, and Manges AR
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- Case-Control Studies, Clostridioides difficile pathogenicity, Epithelial Cells microbiology, Female, Humans, Intestines microbiology, Male, Microbiota physiology, Clostridium Infections genetics, Clostridium Infections microbiology, DNA genetics, Feces chemistry, Feces microbiology
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Clostridium difficile infection (CDI) is intricately linked to the health of the gastrointestinal tract and its indigenous microbiota. In this study, we assessed whether fecal excretion of host DNA is associated with CDI development. Assuming that shedding of epithelial cell increases in the inflamed intestine, we used human DNA excretion as a marker of intestinal insult. Whole-genome shotgun sequencing was employed to quantify host DNA excretion and evaluate bacterial content in fecal samples collected from patients with incipient CDI, hospitalized controls, and healthy subjects. Human DNA excretion was significantly increased in patients admitted to the hospital for a gastrointestinal ailment, as well as prior to an episode of CDI. In multivariable analyses, human read abundance was independently associated with CDI development. Host DNA proportions were negatively correlated with intestinal microbiota diversity. Enterococcus and Escherichia were enriched in patients excreting high quantities of human DNA, while Ruminococcus and Odoribacter were depleted. These findings suggest that intestinal inflammation can occur prior to CDI development and may influence patient susceptibility to CDI. The quantification of human DNA in feces could serve as a simple and noninvasive approach to assess bowel inflammation and identify patients at risk of CDI.
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- 2015
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13. Strategies to prevent Clostridium difficile infections in acute care hospitals: 2014 update.
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Dubberke ER, Carling P, Carrico R, Donskey CJ, Loo VG, McDonald LC, Maragakis LL, Sandora TJ, Weber DJ, Yokoe DS, and Gerding DN
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- 2014
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14. Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection.
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Vincent C, Stephens DA, Loo VG, Edens TJ, Behr MA, Dewar K, and Manges AR
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Background: Antimicrobial use is thought to suppress the intestinal microbiota, thereby impairing colonization resistance and allowing Clostridium difficile to infect the gut. Additional risk factors such as proton-pump inhibitors may also alter the intestinal microbiota and predispose patients to Clostridium difficile infection (CDI). This comparative metagenomic study investigates the relationship between epidemiologic exposures, intestinal bacterial populations and subsequent development of CDI in hospitalized patients. We performed a nested case-control study including 25 CDI cases and 25 matched controls. Fecal specimens collected prior to disease onset were evaluated by 16S rRNA gene amplification and pyrosequencing to determine the composition of the intestinal microbiota during the at-risk period., Results: The diversity of the intestinal microbiota was significantly reduced prior to an episode of CDI. Sequences corresponding to the phylum Bacteroidetes and to the families Bacteroidaceae and Clostridiales Incertae Sedis XI were depleted in CDI patients compared to controls, whereas sequences corresponding to the family Enterococcaceae were enriched. In multivariable analyses, cephalosporin and fluoroquinolone use, as well as a decrease in the abundance of Clostridiales Incertae Sedis XI were significantly and independently associated with CDI development., Conclusions: This study shows that a reduction in the abundance of a specific bacterial family - Clostridiales Incertae Sedis XI - is associated with risk of nosocomial CDI and may represent a target for novel strategies to prevent this life-threatening infection.
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- 2013
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15. First Canadian outbreak of Enterobacteriaceae-expressing Klebsiella pneumoniae carbapenemase type 3.
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Leung V, Loo VG, Frenette C, Domingo MC, Bourgault AM, Mulvey MR, and Robson HG
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Background: Organisms expressing Klebsiella pneumoniae carbapenemase (KPC) are found in several regions worldwide but are rarely detected in Canada. The first outbreak of KPC-expressing strains of Enterobacteriaceae clinical isolates in a university-affiliated hospital intensive care unit (ICU) in Canada is described., Methods: Enterobacteriaceae isolates that were flagged by the Vitek 2 (bioMérieux, France) system as possible carbapenemase producers were subjected to the modified Hodge test. Modified Hodge test-positive organisms were analyzed by pulsed-field gel electrophoresis, tested for KPC and other beta-lactamase genes by polymerase chain reaction analysis and underwent subsequent nucleic acid sequencing. Antimicrobial susceptibility profiles were determined by Vitek 2 and Etest (bioMérieux, France). A chart review was conducted to establish epidemiological links., Results: During the study period, 10 unique Enterobacteriaceae isolates expressing KPC were detected from nine ICU patients. Five patients had infections (three pneumonias, one surgical site infection, one urinary tract infection). Isolates included Escherichia coli (5), Klebsiella oxytoca (2), Serratia marcescens (2) and Citrobacter freundii (1). Polymerase chain reaction analysis and sequencing confirmed the presence of KPC-3 in all isolates; four also carried TEM, two CTX-M and one CMY-2. The imipenem minimum inhibitory concentrations as determined by Etest ranged from 0.75 μg/mL to ≥32 μg/mL. Pulsed field gel electrophoresis clonal patterns and patient location in the ICU revealed presumptive horizontal transmission events., Conclusions: In the present study, Enterobacteriaceae isolates with KPC are emerging and can result in serious infections. The KPC gene can spread via plasmids to different genera of the Enterobacteriaceae family. The dissemination of KPC in Enterobacteriaceae and the consequences for treatment and infection control measures warrant a high degree of vigilance among clinicians and microbiologists.
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- 2012
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16. Fourteen-genome comparison identifies DNA markers for severe-disease-associated strains of Clostridium difficile.
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Forgetta V, Oughton MT, Marquis P, Brukner I, Blanchette R, Haub K, Magrini V, Mardis ER, Gerding DN, Loo VG, Miller MA, Mulvey MR, Rupnik M, Dascal A, and Dewar K
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- Adult, Aged, Clostridioides difficile genetics, Clostridium Infections pathology, DNA, Bacterial genetics, Female, Genotype, Humans, Male, Middle Aged, Severity of Illness Index, Virulence, Bacterial Typing Techniques, Clostridioides difficile classification, Clostridioides difficile pathogenicity, Clostridium Infections microbiology, Genetic Markers, Genome, Bacterial, Polymorphism, Single Nucleotide
- Abstract
Clostridium difficile is a common cause of infectious diarrhea in hospitalized patients. A severe and increased incidence of C. difficile infection (CDI) is associated predominantly with the NAP1 strain; however, the existence of other severe-disease-associated (SDA) strains and the extensive genetic diversity across C. difficile complicate reliable detection and diagnosis. Comparative genome analysis of 14 sequenced genomes, including those of a subset of NAP1 isolates, allowed the assessment of genetic diversity within and between strain types to identify DNA markers that are associated with severe disease. Comparative genome analysis of 14 isolates, including five publicly available strains, revealed that C. difficile has a core genome of 3.4 Mb, comprising ∼ 3,000 genes. Analysis of the core genome identified candidate DNA markers that were subsequently evaluated using a multistrain panel of 177 isolates, representing more than 50 pulsovars and 8 toxinotypes. A subset of 117 isolates from the panel had associated patient data that allowed assessment of an association between the DNA markers and severe CDI. We identified 20 candidate DNA markers for species-wide detection and 10,683 single nucleotide polymorphisms (SNPs) associated with the predominant SDA strain (NAP1). A species-wide detection candidate marker, the sspA gene, was found to be the same across 177 sequenced isolates and lacked significant similarity to those of other species. Candidate SNPs in genes CD1269 and CD1265 were found to associate more closely with disease severity than currently used diagnostic markers, as they were also present in the toxin A-negative and B-positive (A-B+) strain types. The genetic markers identified illustrate the potential of comparative genomics for the discovery of diagnostic DNA-based targets that are species specific or associated with multiple SDA strains.
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- 2011
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17. Comparative metagenomic study of alterations to the intestinal microbiota and risk of nosocomial Clostridum difficile-associated disease.
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Manges AR, Labbe A, Loo VG, Atherton JK, Behr MA, Masson L, Tellis PA, and Brousseau R
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- Aged, Anti-Bacterial Agents adverse effects, Anti-Bacterial Agents therapeutic use, Anti-Inflammatory Agents adverse effects, Anti-Inflammatory Agents therapeutic use, Bacteria classification, Bacteria genetics, Biodiversity, Case-Control Studies, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Feces microbiology, Female, Hospitalization, Humans, Male, Microarray Analysis, Middle Aged, Quebec, RNA, Ribosomal, 16S genetics, Clostridioides difficile pathogenicity, Clostridium Infections, Metagenome, Risk Assessment
- Abstract
This study investigated the relationship between hospital exposures, intestinal microbiota, and subsequent risk of Clostridium difficile-associated disease (CDAD), with use of a nested case-control design. The study included 599 patients, hospitalized from September 2006 through May 2007 in Montreal, Quebec, from whom fecal samples were obtained within 72 h after admission; 25 developed CDAD, and 50 matched controls were selected for analysis. Nonsteroidal anti-inflammatory drugs and antibiotic use were associated with CDAD. Fecal specimens were evaluated by 16S ribosomal RNA microarray to characterize bacteria in the intestinal microbiota during the at-risk period. Probe intensities were higher for Firmicutes, Proteobacteria, and Actinobacteria in the patients with CDAD, compared with controls, whereas probe intensities for Bacteroidetes were lower. After epidemiologic factors were controlled for, only Bacteroidetes and Firmicutes remained significantly and independently associated with development of CDAD. Hospital exposures were associated with changes in the intestinal microbiota and risk of CDAD, and these changes were not driven exclusively by antimicrobial use.
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- 2010
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18. Clinical practice guidelines for Clostridium difficile infection in adults: 2010 update by the society for healthcare epidemiology of America (SHEA) and the infectious diseases society of America (IDSA).
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Cohen SH, Gerding DN, Johnson S, Kelly CP, Loo VG, McDonald LC, Pepin J, and Wilcox MH
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- Adult, Humans, Clostridioides difficile drug effects, Clostridium Infections diagnosis, Clostridium Infections drug therapy, Clostridium Infections epidemiology, Cross Infection diagnosis, Cross Infection drug therapy, Cross Infection epidemiology, Enterocolitis, Pseudomembranous diagnosis, Enterocolitis, Pseudomembranous drug therapy, Enterocolitis, Pseudomembranous epidemiology, Infection Control methods
- Abstract
Since publication of the Society for Healthcare Epidemiology of America position paper on Clostridium difficile infection in 1995, significant changes have occurred in the epidemiology and treatment of this infection. C. difficile remains the most important cause of healthcare-associated diarrhea and is increasingly important as a community pathogen. A more virulent strain of C. difficile has been identified and has been responsible for more-severe cases of disease worldwide. Data reporting the decreased effectiveness of metronidazole in the treatment of severe disease have been published. Despite the increasing quantity of data available, areas of controversy still exist. This guideline updates recommendations regarding epidemiology, diagnosis, treatment, and infection control and environmental management.
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- 2010
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19. Hand hygiene with soap and water is superior to alcohol rub and antiseptic wipes for removal of Clostridium difficile.
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Oughton MT, Loo VG, Dendukuri N, Fenn S, and Libman MD
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- Clostridioides difficile isolation & purification, Colony Count, Microbial, Disinfectants pharmacology, Disinfection methods, Ethanol, Humans, Hygiene, Alcohols pharmacology, Anti-Infective Agents, Local pharmacology, Clostridioides difficile drug effects, Hand microbiology, Hand Disinfection methods, Soaps pharmacology, Water pharmacology
- Abstract
Objective: To evaluate common hand hygiene methods for efficacy in removing Clostridium difficile., Design: Randomized crossover comparison among 10 volunteers with hands experimentally contaminated by nontoxigenic C. difficile., Methods: Interventions included warm water with plain soap, cold water with plain soap, warm water with antibacterial soap, antiseptic hand wipes, alcohol-based handrub, and a control involving no intervention. All interventions were evaluated for mean reduction in colony-forming units (CFUs) under 2 contamination protocols: "whole hand" and "palmar surface." Results were analyzed according to a Bayesian approach, by using hierarchical models adjusted for multiple observations., Results: Under the whole-hand protocol, the greatest adjusted mean reductions were achieved by warm water with plain soap (2.14 log(10) CFU/mL [95% credible interval (CrI), 1.74-2.54 log(10) CFU/mL]), cold water with plain soap (1.88 log(10) CFU/mL [95% CrI, 1.48-2.28 log(10) CFU/mL), and warm water with antibacterial soap (1.51 log(10) CFU/mL [95% CrI, 1.12-1.91 log(10) CFU/mL]), followed by antiseptic hand wipes (0.57 log(10) CFU/mL [95% CrI, 0.17-0.96 log(10) CFU/mL]). Alcohol-based handrub (0.06 log(10) CFU/mL [95% CrI, -0.34 to 0.45 log(10) CFU/mL]) was equivalent to no intervention. Under the palmar surface protocol, warm water with plain soap, cold water with plain soap, and warm water with antibacterial soap again yielded the greatest mean reductions, followed by antiseptic hand wipes (26.6, 26.6, 26.6, and 21.9 CFUs per plate, respectively), when compared with alcohol-based handrub. Hypothenar (odds ratio, 10.98 [95% CrI, 1.96-37.65]) and thenar (odds ratio, 6.99 [95% CrI, 1.25-23.41]) surfaces were more likely than fingertips to remain heavily contaminated after handwashing., Conclusions: Handwashing with soap and water showed the greatest efficacy in removing C. difficile and should be performed preferentially over the use of alcohol-based handrubs when contact with C. difficile is suspected or likely.
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- 2009
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20. Antimicrobial-associated risk factors for Clostridium difficile infection.
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Owens RC Jr, Donskey CJ, Gaynes RP, Loo VG, and Muto CA
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- Adult, Anti-Infective Agents adverse effects, Clostridioides difficile growth & development, Clostridioides difficile pathogenicity, Disease Management, Drug Resistance, Bacterial, Drug Therapy, Combination, Enterocolitis, Pseudomembranous drug therapy, Enterocolitis, Pseudomembranous epidemiology, Enterocolitis, Pseudomembranous prevention & control, Humans, Intestines microbiology, Risk Factors, Time Factors, Anti-Infective Agents therapeutic use, Clostridioides difficile drug effects, Ecosystem, Enterocolitis, Pseudomembranous etiology
- Abstract
Antimicrobial therapy plays a central role in the pathogenesis of Clostridium difficile infection (CDI), presumably through disruption of indigenous intestinal microflora, thereby allowing C. difficile to grow and produce toxin. Investigations involving animal models and studies performed in vitro suggest that inhibitory activity against C. difficile and differences in the propensity to stimulate toxin production may also influence the likelihood that particular drugs may cause CDI. Although nearly all antimicrobial classes have been associated with CDI, clindamycin, third-generation cephalosporins, and penicillins have traditionally been considered to harbor the greatest risk. Recent studies have also implicated fluoroquinolones as high-risk agents, a finding that is most likely to be related in part to increasing fluoroquinolone resistance among epidemic strains (i.e., restriction-endonuclease analysis group BI/North American PFGE type 1 strains) and some nonepidemic strains of C. difficile. Restrictions in the use of clindamycin and third-generation cephalosporins have been associated with reductions in CDI. Because use of any antimicrobial has the potential to induce the onset of CDI and disease caused by other health care-associated pathogens, antimicrobial stewardship programs that promote judicious use of antimicrobials are encouraged in concert with environmental and infection control-related efforts.
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- 2008
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21. A portrait of the geographic dissemination of the Clostridium difficile North American pulsed-field type 1 strain and the epidemiology of C. difficile-associated disease in Québec.
- Author
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Hubert B, Loo VG, Bourgault AM, Poirier L, Dascal A, Fortin E, Dionne M, and Lorange M
- Subjects
- Anti-Bacterial Agents pharmacology, Clostridioides difficile drug effects, Clostridioides difficile isolation & purification, Genotype, Incidence, Microbial Sensitivity Tests, Quebec epidemiology, Clostridioides difficile classification, Clostridioides difficile genetics, Clostridium Infections epidemiology, Clostridium Infections microbiology
- Abstract
Background: An increase in the incidence and severity of Clostridium difficile-associated disease in Québec and the United States has been associated with a hypervirulent strain referred to as North American pulsed-field type 1 (NAP1)/027., Methods: In 2005, a prospective study was conducted in 88 Québec hospitals, and 478 consecutive nosocomial isolates of C. difficile were obtained. The isolates were subjected to pulsed-field gel electrophoresis (PFGE) typing, antimicrobial susceptibility testing, and detection of binary toxin genes and tcdC gene deletion. Data on patient age and occurrence of complications were collected., Results: PFGE typing of 478 isolates of C. difficile yielded 61 PFGE profiles. Pulsovars A (57%), B (10%), and B1 (8%) were predominant. The PFGE profile of pulsovar A was identical to that of strain NAP1. It showed 67% relatedness with 15 other PFGE patterns, among which 11 had both binary toxin genes and a partial tcdC deletion but different antibiotic susceptibility profiles. Pulsovars B and B1 were identical to strain NAP2/ribotype 001. In hospitals showing a predominant clonal A or B-B1 PFGE pattern, incidence of C. difficile-associated disease was 2 and 1.3 times higher, respectively, than in hospitals without any predominant clonal PFGE pattern. Severe disease was twice as frequent among patients with strains possessing binary toxin genes and tcdC deletion than among patients with strains lacking these virulence factors., Conclusions: This study helped to quantify the impact of strain NAP1 on the incidence and severity of C. difficile-associated disease in Québec in 2005. The identification of the geographic dissemination of this predominant strain may help to focus regional infection-control efforts.
- Published
- 2007
- Full Text
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22. In vitro susceptibility of Clostridium difficile clinical isolates from a multi-institutional outbreak in Southern Québec, Canada.
- Author
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Bourgault AM, Lamothe F, Loo VG, and Poirier L
- Subjects
- Cross Infection epidemiology, Cross Infection microbiology, Drug Resistance, Bacterial, Enterocolitis, Pseudomembranous microbiology, Humans, Microbial Sensitivity Tests, Quebec epidemiology, Anti-Bacterial Agents pharmacology, Clostridioides difficile drug effects, Disease Outbreaks, Enterocolitis, Pseudomembranous epidemiology
- Abstract
Clostridium difficile isolates from a 2004 outbreak in Québec, Canada, were all found to be susceptible to metronidazole, vancomycin, rifampin, and meropenem but resistant to bacitracin, cefotaxime, ciprofloxacin, and levofloxacin, and most (>80%) were resistant to ceftriaxone, clarithromycin, gatifloxacin, and moxifloxacin. The predominant NAP1 isolates were susceptible to clindamycin, while the NAP2 isolates were resistant.
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- 2006
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23. Clostridium difficile: a formidable foe.
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Loo VG, Libman MD, Miller MA, Bourgault AM, Frenette CH, Kelly M, Michaud S, Nguyen T, Poirier L, Vibien A, Horn R, Laflamme PJ, and René P
- Subjects
- Canada epidemiology, Clostridium Infections epidemiology, Clostridium Infections microbiology, Cross Infection epidemiology, Cross Infection microbiology, Diarrhea epidemiology, Diarrhea microbiology, Humans, Quebec epidemiology, Clostridioides difficile, Clostridium Infections prevention & control, Cross Infection prevention & control, Diarrhea prevention & control, Disease Outbreaks prevention & control
- Published
- 2004
- Full Text
- View/download PDF
24. Aortitis due to Salmonella: report of 10 cases and comprehensive review of the literature.
- Author
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Soravia-Dunand VA, Loo VG, and Salit IE
- Subjects
- Adult, Aged, Aneurysm, Infected etiology, Aortitis diagnosis, Aortitis therapy, Female, Humans, Male, Middle Aged, Postoperative Complications, Salmonella Infections therapy, Aortitis etiology, Salmonella Infections complications
- Abstract
We describe ten cases of aortitis due to Salmonella that were treated at the University of Toronto-affiliated Hospitals between 1978 and 1997. Predisposing conditions included hypertension, diabetes mellitus, and myelodysplastic syndrome. Main presenting symptoms were fever and abdominal and back pain. The most frequent site involved was the abdominal aorta, followed by the thoracic aorta. All but one patient were treated with intravenous bactericidal antibiotics; seven also underwent surgery, four with axillobifemoral grafts and three with in situ grafts. Four of seven patients died within 1 month of the surgical procedure (three patients with in situ grafts and one patient with axillobifemoral graft). We also reviewed the pathogenesis, clinical and laboratory characteristics, and treatment of 140 cases of aortitis due to Salmonella reported in the literature since 1948. The use of bactericidal antibiotics, together with early surgical intervention and long-term suppressive antibiotic therapy, has led to improved survival.
- Published
- 1999
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25. An outbreak of Serratia marcescens infections related to contaminated chlorhexidine.
- Author
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Vigeant P, Loo VG, Bertrand C, Dixon C, Hollis R, Pfaller MA, McLean AP, Briedis DJ, Perl TM, and Robson HG
- Subjects
- Cross Infection microbiology, Electrophoresis, Gel, Pulsed-Field, Female, Hospitals, University, Humans, Male, Middle Aged, Quebec, Serratia Infections microbiology, Anti-Infective Agents, Local, Chlorhexidine, Cross Infection etiology, Serratia Infections etiology, Serratia marcescens isolation & purification
- Abstract
An outbreak of Serratia marcescens infections occurred in a university tertiary-care hospital. Alcohol-free chlorhexidine solutions were contaminated with S marcescens. The majority of patient and chlorhexidine strains had similar pulsed field-gel electrophoresis banding patterns. Chlorhexidine was recalled, and the rate of S marcescens isolation returned to baseline. Chlorhexidine without alcohol should not be used as an antiseptic.
- Published
- 1998
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26. Utility of serology in determining Helicobacter pylori eradication after therapy.
- Author
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Fallone CA, Loo VG, and Barkun AN
- Subjects
- Adult, Amoxicillin administration & dosage, Anti-Bacterial Agents administration & dosage, Anti-Ulcer Agents administration & dosage, Double-Blind Method, Drug Therapy, Combination, Duodenal Ulcer drug therapy, Duodenal Ulcer microbiology, Enzyme-Linked Immunosorbent Assay, Female, Helicobacter Infections blood, Helicobacter Infections drug therapy, Humans, Immunoenzyme Techniques, Immunoglobulin A blood, Immunoglobulin G blood, Male, Metronidazole administration & dosage, Organometallic Compounds administration & dosage, Predictive Value of Tests, Sensitivity and Specificity, Antibodies, Bacterial blood, Helicobacter Infections diagnosis, Helicobacter pylori immunology
- Abstract
Objective: To determine the usefulness of four serological tests in confirming cure of H pylori infection before the previously reported six-month post-treatment delay., Patients and Methods: As part of a prospective, blinded, controlled trial, in which patients with duodenal ulcers were randomized to receive different combinations of antibiotics, serum samples were obtained in 89 patients before treatment, as well as on several occasions after treatment. Antibody titres were determined by ELISA with Bio-Rad immunoglobulin (Ig) A, Bio-Rad IgG, Pyloriset EIA-A for IgA and Pyloriset EIA-G for IgG. Eradication was confirmed with antral biopsy three months after therapy., Results: The percentage drop in titre following treatment was significantly larger for the group of patients who were treated successfully with all four kits. Optimal cut-offs for identifying successful therapy were determined, and accuracy improved as the interval between testing and therapy was prolonged. Six months after therapy, the IgG test from Bio-Rad achieved 100% sensitivity and 80% specificity, and that from Pyloriset achieved 88% sensitivity and 100% specificity. At three months, however, test performance was quite good, with 90% sensitivity and 80% specificity when using a Pyloriset IgA titre drop of 20% or greater to predict successful eradication., Conclusion: Serology is a simple, easily available, noninvasive method that exhibits good positive predictive value in the confirmation of successful cure of H pylori infection three or six months after treatment.
- Published
- 1998
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27. Control of construction-associated nosocomial aspergillosis in an antiquated hematology unit.
- Author
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Loo VG, Bertrand C, Dixon C, Vityé D, DeSalis B, McLean AP, Brox A, and Robson HG
- Subjects
- Air Pollution, Indoor analysis, Aspergillosis complications, Aspergillosis epidemiology, Bone Marrow Transplantation, Cross Infection complications, Cross Infection epidemiology, Hospital Design and Construction, Humans, Immunocompromised Host, Incidence, Infection Control methods, Leukemia, Neutropenia etiology, Oncology Service, Hospital, Prospective Studies, Retrospective Studies, Air Pollution, Indoor adverse effects, Aspergillosis prevention & control, Cross Infection prevention & control, Disease Outbreaks, Ventilation standards
- Abstract
Objective: To determine the incidence of aspergillosis in patients with leukemia or bone marrow transplants during a construction-associated outbreak, and the effect of an environmental control program for Aspergillus., Design: Clinical, microbiological, and pathological records were reviewed retrospectively once the outbreak was appreciated, and prospectively thereafter, to determine the presence or absence of aspergillosis and duration of neutropenia., Setting: A university tertiary-care center with a single designated hematology-oncology unit., Patients: From January 1988 to September 1993, there were 141 patients with leukemia or bone marrow transplants identified as being neutropenic during 231 admissions to this specialized unit., Interventions: Installation of wall-mounted portable high-efficiency particulate air (HEPA)-filter air purifiers, application of copper-8-quinolinolate-formulated paint, replacement of perforated ceiling tiles with nonperforated type, sealing of all windows, replacement of horizontal, dust-accumulating blinds with vinyl, opaque, roller shades, and systematic and regular cleaning of surfaces., Results: Thirty-six cases of nosocomial aspergillosis were diagnosed during this period. The incidence density (ID) in the preconstruction period was 3.18 per 1,000 days at risk. During construction activity-before the implementation of a control strategy-the ID increased dramatically to 9.88 per 1,000 days at risk. With infection control measures implemented and continued construction work, the ID decreased to 2.91 per 1,000 days at risk, comparable to the preconstruction baseline rate., Conclusions: An environmental control strategy incorporating widely available technology may have played an important role in controlling this outbreak of construction-associated invasive aspergillosis.
- Published
- 1996
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28. Activity of vancomycin, teicoplanin and cephalosporins against penicillin-susceptible and penicillin-intermediate Streptococcus pneumoniae.
- Author
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Loo VG, Lavallée J, McAlear D, and Robson HG
- Abstract
Objective: To report in vitro susceptibilities of penicillin-susceptible and penicillin-intermediate Streptococcus pneumoniae isolates to cephalosporins, vancomycin and teicoplanin., Design: Minimal inhibitory concentrations (mic) were determined according to National Committee for Clinical Laboratory Standards guidelines for 17 penicillin-susceptible isolates (mic 0.06 mg/L or less) and 16 isolates showing intermediate susceptibility to penicillin (mic 0.12 to 1.0 mg/L)., Setting: Tertiary care university centre., Main Results: Comparison of the mic(90) values with those of other antibiotics tested demonstrated that ceftriaxone, cefotaxime and teicoplanin were the most active agents against penicillin-susceptible strains. However, teicoplanin had the lowest mic and was superior to other agents against strains with intermediate penicillin susceptibility. The mics of all cephalosporins increased in concordance with the mic of penicillin., Conclusion: Isolates demonstrating intermediate susceptibility or resistance to penicillin should be routinely evaluated for susceptibility to clinically important cephalosporins.
- Published
- 1995
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29. Helicobacter pylori infection in a pediatric population: in vitro susceptibilities to omeprazole and eight antimicrobial agents.
- Author
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Loo VG, Sherman P, and Matlow AG
- Subjects
- Adolescent, Child, Drug Resistance, Microbial, Helicobacter pylori isolation & purification, Humans, Microbial Sensitivity Tests, Helicobacter pylori drug effects, Omeprazole pharmacology
- Abstract
The in vitro activities of omeprazole and eight antimicrobial agents against 18 clinical strains of Helicobacter pylori isolated from a pediatric population were determined by an agar dilution method. Ampicillin and erythromycin were the most active agents in vitro. All strains were susceptible to azithromycin, ciprofloxacin, doxycycline, metronidazole, and tinidazole. One isolate demonstrated resistance to cefixime (MIC, greater than or equal to 4 micrograms/ml). H. pylori was inhibited by the proton pump inhibitor omeprazole.
- Published
- 1992
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30. Survey of Neisseria gonorrhoeae antimicrobial susceptibility in Ontario.
- Author
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Loo VG, Simor AE, Jaeger R, and Low DE
- Abstract
The minimal inhibitory concentrations (MICs) of penicillin, tetracycline, erythromycin, cefoxitin, ceftriaxone and spectinomycin were determined for 300 consecutive strains of Neisseria gonorrhoeae collected from physicians' offices in Ontario. Only four isolates were found to produce beta-lactamase. Of the remaining 296 isolates, five (1.7%) had penicillin MICs greater than or equal to 1 mg/L, 78 (26.3%) had tetracycline MICs greater than or equal to 1 mg/L, 13 (4.4%) had cefoxitin MICs greater than or equal to 1 mg/L and 43 (14.5%) had erythromycin MICs greater than or equal to 1 mg/L. Two isolates (0.7%) had high level tetracycline resistance with MICs greater than or equal to 16 mg/L. All N gonorrhoeae isolates were susceptible to ceftriaxone and to spectinomycin.
- Published
- 1990
- Full Text
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31. Role of iron in intracellular growth of Trypanosoma cruzi.
- Author
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Loo VG and Lalonde RG
- Subjects
- Animals, Cells, Cultured, Deferoxamine pharmacology, Mice, Iron physiology, Macrophages parasitology, Trypanosoma cruzi growth & development
- Abstract
Host hypoferremic responses occur during infection with Trypanosoma cruzi, presumably through the transfer of iron to the sites of intracellular parasite replication. Depletion of host intracellular iron stores reduces parasite pathogenicity. It has therefore been hypothesized that T. cruzi requires iron for optimal growth in host cells and that, unlike extracellular pathogens, T. cruzi may benefit from host hypoferremic responses. These hypotheses were examined by the in vitro infection of peritoneal macrophages with T. cruzi. Various doses of desferrioxamine or referrated desferrioxamine were added to the culture medium, and parasite growth was monitored. The influence of treatment on uninfected macrophage morphology, function, and iron content was also verified. Desferrioxamine reduced the rate of amastigote replication in a dose-dependent fashion, whereas referrated desferrioxamine did not. The iron content of desferrioxamine-treated macrophages was decreased by 55% without provoking significant morphological or functional changes. Thus, amastigotes used host cell iron stores for optimal growth, and desferrioxamine reduced growth by depleting host cell iron. Hence, it was suggested that depletion of host intracellular iron stores may protect against T. cruzi and, furthermore, that host responses which transfer iron to the intracellular sites of T. cruzi replication may enhance parasite pathogenicity.
- Published
- 1984
- Full Text
- View/download PDF
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