357 results on '"Miccheli A."'
Search Results
2. Pterostilbene-loaded PLGA nanoparticles alter phenylpropanoid and oxylipin metabolism in Solanum lycopersicum L. leaves
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Camilla Badiali, Marzia Beccaccioli, Fabio Sciubba, Laura Chronopoulou, Valerio Petruccelli, Cleofe Palocci, Massimo Reverberi, Alfredo Miccheli, Gabriella Pasqua, and Elisa Brasili
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Medicine ,Science - Abstract
Abstract Due to the fast-changing global climate, conventional agricultural systems have to deal with more unpredictable and harsh environmental conditions leading to compromise food production. The application of phytonanotechnology can ensure safer and more sustainable crop production, allowing the target-specific delivery of bioactive molecules with great and partially explored positive effects for agriculture, such as an increase in crop production and plant pathogen reduction. In this study, the effect of free pterostilbene (PTB) and poly(lactic-co-glycolic) acid (PLGA) nanoparticles (NPs) loaded with pterostilbene was investigated on Solanum lycopersicum L. metabolism. An untargeted NMR-based metabolomics approach was used to examine primary and secondary metabolism whereas a targeted HPLC–MS/MS-based approach was used to explore the impact on defense response subjected to anti-oxidant effect of PTB, such as free fatty acids, oxylipins and them impact on hormone biosynthesis, in particular salicylic and jasmonic acid. In tomato leaves after treatment with PTB and PLGA NPs loaded with PTB (NPs + PTB), both NPs + PTB and free PTB treatments increased GABA levels in tomato leaves. In addition, a decrease of quercetin-3-glucoside associated with the increase in caffeic acid was observed suggesting a shift in secondary metabolism towards the biosynthesis of phenylpropanoids and other phenolic compounds. An increase of behenic acid (C22:0) and a remodulation of oxylipin metabolism deriving from the linoleic acid (i.e. 9-HpODE, 13-HpODE and 9-oxo-ODE) and linolenic acid (9-HOTrE and 9-oxoOTrE) after treatment with PLGA NPs and PLGA NPs + PTB were also found as a part of mechanisms of plant redox modulation. To the best of our knowledge, this is the first study showing the role of PLGA nanoparticles loaded with pterostilbene in modulating leaf metabolome and physiology in terms of secondary metabolites, fatty acids, oxylipins and hormones. In perspective, PLGA NPs loaded with PTB could be used to reshape the metabolic profile to allow plant to react more quickly to stresses.
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- 2024
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3. NMR-based metabolomics for investigating urinary profiles of metal carpentry workers exposed to welding fumes and volatile organic compounds
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Michele De Rosa, Ottavia Giampaoli, Fabio Sciubba, Federico Marini, Giovanna Tranfo, Renata Sisto, Alfredo Miccheli, Laura Tricarico, Anna Rita Fetoni, and Mariangela Spagnoli
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NMR-based metabolomics ,urinary profile ,occupational exposure ,welding fumes ,volatile organic compounds ,PLS-DA ,Public aspects of medicine ,RA1-1270 - Abstract
IntroductionMetal carpentry includes a wide range of work activities such as welding and cutting metallic components, use of solvents and paints. Therefore, the employees in these types of activities are mainly exposed to welding fumes and volatile organic solvents. Here, we present an NMR-based metabolomic approach for assessing urinary profiles of workers in the same company that are exposed to two different risk factors.MethodsThe study enrolled 40 male subjects exposed to welding fumes, 13 male subjects exposed to volatile organic compounds of a metal carpentry company, and 24 healthy volunteers. All samples were collected, in the middle of the working week at fast. Thirty-five urinary metabolites belonging to different chemical classes such as amino acids, organic acids and amines were identified and quantified. Results were processed by multivariate statistical analysis for identifying significant metabolites for each working group examined, compared to controls.ResultsWorkers exposed to welding fumes displayed urinary increase in glutamine, tyrosine, taurine, creatine, methylguanidine and pseudouridine associated to oxidative impairment, while workers exposed to volatile organic compounds showed higher urinary levels of branched chain aminoacids.ConclusionOur work identified specific urinary profile related to each occupational exposure, even if it is below the threshold limit values.
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- 2024
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4. Antibiotics treatment promotes vasculogenesis in the brain of glioma-bearing mice
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Maria Rosito, Javeria Maqbool, Alice Reccagni, Ottavia Giampaoli, Fabio Sciubba, Fabrizio Antonangeli, Ferdinando Scavizzi, Marcello Raspa, Federica Cordella, Lucrezia Tondo, Silvia Di Angelantonio, Flavia Trettel, Alfredo Miccheli, Giuseppina D’Alessandro, and Cristina Limatola
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Cytology ,QH573-671 - Abstract
Abstract In recent years, several studies described the close relationship between the composition of gut microbiota and brain functions, highlighting the importance of gut-derived metabolites in mediating neuronal and glial cells cross-talk in physiological and pathological condition. Gut dysbiosis may affects cerebral tumors growth and progression, but the specific metabolites involved in this modulation have not been identified yet. Using a syngeneic mouse model of glioma, we have investigated the role of dysbiosis induced by the administration of non-absorbable antibiotics on mouse metabolome and on tumor microenvironment. We report that antibiotics treatment induced: (1) alteration of the gut and brain metabolome profiles; (2) modeling of tumor microenvironment toward a pro-angiogenic phenotype in which microglia and glioma cells are actively involved; (3) increased glioma stemness; (4) trans-differentiation of glioma cells into endothelial precursor cells, thus increasing vasculogenesis. We propose glycine as a metabolite that, in ABX-induced dysbiosis, shapes brain microenvironment and contributes to glioma growth and progression.
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- 2024
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5. A Bayesian approach to translators' reliability assessment
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Miccheli, Marco, Leban, Andrej, Tacchella, Andrea, Zaccaria, Andrea, Mazzilli, Dario, and Bratières, Sébastien
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Computer Science - Computation and Language ,Physics - Physics and Society - Abstract
Translation Quality Assessment (TQA) is a process conducted by human translators and is widely used, both for estimating the performance of (increasingly used) Machine Translation, and for finding an agreement between translation providers and their customers. While translation scholars are aware of the importance of having a reliable way to conduct the TQA process, it seems that there is limited literature that tackles the issue of reliability with a quantitative approach. In this work, we consider the TQA as a complex process from the point of view of physics of complex systems and approach the reliability issue from the Bayesian paradigm. Using a dataset of translation quality evaluations (in the form of error annotations), produced entirely by the Professional Translation Service Provider Translated SRL, we compare two Bayesian models that parameterise the following features involved in the TQA process: the translation difficulty, the characteristics of the translators involved in producing the translation, and of those assessing its quality - the reviewers. We validate the models in an unsupervised setting and show that it is possible to get meaningful insights into translators even with just one review per translation; subsequently, we extract information like translators' skills and reviewers' strictness, as well as their consistency in their respective roles. Using this, we show that the reliability of reviewers cannot be taken for granted even in the case of expert translators: a translator's expertise can induce a cognitive bias when reviewing a translation produced by another translator. The most expert translators, however, are characterised by the highest level of consistency, both in translating and in assessing the translation quality., Comment: 21 pages, 14 figures
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- 2022
6. Antibiotics treatment promotes vasculogenesis in the brain of glioma-bearing mice
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Rosito, Maria, Maqbool, Javeria, Reccagni, Alice, Giampaoli, Ottavia, Sciubba, Fabio, Antonangeli, Fabrizio, Scavizzi, Ferdinando, Raspa, Marcello, Cordella, Federica, Tondo, Lucrezia, Di Angelantonio, Silvia, Trettel, Flavia, Miccheli, Alfredo, D’Alessandro, Giuseppina, and Limatola, Cristina
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- 2024
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7. Relatedness in the Era of Machine Learning
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Tacchella, Andrea, Zaccaria, Andrea, Miccheli, Marco, and Pietronero, Luciano
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Physics - Physics and Society ,Economics - General Economics - Abstract
Relatedness is a quantification of how much two human activities are similar in terms of the inputs and contexts needed for their development. Under the idea that it is easier to move between related activities than towards unrelated ones, empirical approaches to quantify relatedness are currently used as predictive tools to inform policies and development strategies in governments, international organizations, and firms. Here we focus on countries' industries and we show that the standard, widespread approach of estimating Relatedness through the co-location of activities (e.g. Product Space) generates a measure of relatedness that performs worse than trivial auto-correlation prediction strategies. We argue that this is a consequence of the poor signal-to-noise ratio present in international trade data. In this paper we show two main findings. First, we find that a shift from two-products correlations (network-density based) to many-products correlations (decision trees) can dramatically improve the quality of forecasts with a corresponding reduction of the risk of wrong policy choices. Then, we propose a new methodology to empirically estimate Relatedness that we call Continuous Projection Space (CPS). CPS, which can be seen as a general network embedding technique, vastly outperforms all the co-location, network-based approaches, while retaining a similar interpretability in terms of pairwise distances.
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- 2021
8. Pisum sativum L. ‘Eso’: Metabolic Profiling of Yellow Seeds to Define the Optimal Harvest Time
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Adriano Patriarca, Fabio Sciubba, Alberta Tomassini, Ottavia Giampaoli, Michele De Rosa, Federico Marini, Walter Aureli, Alfredo Miccheli, and Elisa Brasili
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yellow peas ,NMR-based metabolic profile ,harvest time ,Agriculture (General) ,S1-972 - Abstract
The yellow pea (Pisum sativum L. ‘Eso’, sin. Lathyrus oleracaeus Lam.(YP)) is an annual herbaceous plant that belongs to the Fabaceae family. Peas, along with other legumes, are an excellent source of proteins and essential amino acids; the yellow variety is known for maintaining a good protein profile even if subjected to industrial processing. However, the presence of antinutrients, such as phytates and oligosaccharides, limits its consumption as a fresh legume to its use as a source of isolated proteins or for animal feed. The aim of the study is to evaluate the changes in the entire phytochemical profile of YP seeds as a function of the harvest time. YPs harvested at about 40, 50, 60, and 70 days from sowing were examined by high-resolution NMR spectroscopy employing 1H-NMR, 1H-1H TOCSY, and 1H-13C HSQC. In total, 40 molecular species were identified and quantified; it was observed that there was a monotonous decrease in amino acids, carbohydrates, and secondary metabolites as a function of time. Antinutrient levels increased, but only in later sampling times. This study identified the optimal harvest time for yellow peas “Eso” in the fortieth day from sowing, adding new information about the best nutritional outcome for humans.
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- 2024
- Full Text
- View/download PDF
9. NMR Untargeted and HPLC-MS/MS Targeted Metabolomic Approaches for Evaluating Styrene Exposure in the Urine of Shipyard Workers
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Ottavia Giampaoli, Fabio Sciubba, Giovanna Tranfo, Renata Sisto, Daniela Pigini, Michele De Rosa, Adriano Patriarca, Alfredo Miccheli, Anna Rita Fetoni, Laura Tricarico, and Mariangela Spagnoli
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styrene exposure ,NMR-based metabolomics ,oxidative stress biomarkers ,urinary metabolic profiles ,Chemical technology ,TP1-1185 - Abstract
Due to its chemical properties, styrene is largely employed in the manufacturing of several products including rubber, polymers and resins, and it is particularly suitable for shipbuilding industry purposes. In this context, the main exposure to styrene occurs in occupational settings. Despite its widespread use, its long-term effects on human health at the occupational level are still unclear. The aim of this pilot study was to evaluate changes in styrene exposure biomarkers related to the metabolic and oxidative stress profiles in the urine of seventeen shipyard workers and seventeen non-exposed subjects. Urinary metabolites were assessed by means of NMR spectroscopy, including mandelic and phenylglyoxylic acids; four oxidative stress biomarkers, namely 8-oxo-7,8-dihydroguanine, 8-oxo-7,8-dihydroguanosine, and 8-oxo-7,8-dihydro-2′-deoxyguanosine and 3-nitrotyrosine, were evaluated via HPLC-MS/MS. The metabolic profiles of exposed workers showed both long- and short-term metabolic responses to styrene exposure compared to non-exposed subjects. From the comparison between non-exposed and before-shift workers, only 8-oxo-7,8-dihydroguanine and 8-oxo-7,8-dihydro-2′-deoxyguanosine levels were significantly different (long term exposure response). At the same time, comparing the non-exposed group with after-shift workers, we observed lower levels of pseudouridine and 1-methylnicotinamide and higher glutamine levels in after-shift workers. The comparison between before-shift and after-shift workers showed that 8-oxo-7,8-dihydroguanine significantly increased after the shift, suggesting its involvement in the exposure to styrene (short-term exposure response). The obtained results, although preliminary, allow us to lay the basis for further human studies aimed at establishing a global understanding of styrene metabolism.
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- 2024
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10. Short-chain fatty acids promote the effect of environmental signals on the gut microbiome and metabolome in mice
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Francesco Marrocco, Mary Delli Carpini, Stefano Garofalo, Ottavia Giampaoli, Eleonora De Felice, Maria Amalia Di Castro, Laura Maggi, Ferdinando Scavizzi, Marcello Raspa, Federico Marini, Alberta Tomassini, Roberta Nicolosi, Carolina Cason, Flavia Trettel, Alfredo Miccheli, Valerio Iebba, Giuseppina D’Alessandro, and Cristina Limatola
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Biology (General) ,QH301-705.5 - Abstract
Mice exposed to environmental enrichment for 5 weeks display distinct microbiota composition and behavioral and metabolic profiles compared to mice exposed to a standard environment. Mice treated with a mixture of short-chain fatty acids that are produced by gut bacteria recapitulate some of the effects of this environmental enrichment.
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- 2022
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11. Short-chain fatty acids promote the effect of environmental signals on the gut microbiome and metabolome in mice
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Marrocco, Francesco, Delli Carpini, Mary, Garofalo, Stefano, Giampaoli, Ottavia, De Felice, Eleonora, Di Castro, Maria Amalia, Maggi, Laura, Scavizzi, Ferdinando, Raspa, Marcello, Marini, Federico, Tomassini, Alberta, Nicolosi, Roberta, Cason, Carolina, Trettel, Flavia, Miccheli, Alfredo, Iebba, Valerio, D’Alessandro, Giuseppina, and Limatola, Cristina
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- 2022
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12. Urinary metabolomics of HCV patients with severe liver fibrosis before and during the sustained virologic response achieved by direct acting antiviral treatment
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Biliotti, Elisa, Giampaoli, Ottavia, Sciubba, Fabio, Marini, Federico, Tomassini, Alberta, Palazzo, Donatella, Capuani, Giorgio, Esvan, Rozenn, Spaziante, Martina, Taliani, Gloria, and Miccheli, Alfredo
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- 2021
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13. 2-hydroxyisobutyric acid (2-HIBA) modulates ageing and fat deposition in Caenorhabditis elegans
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Emily Schifano, Giorgia Conta, Adele Preziosi, Carino Ferrante, Giovanni Batignani, Patrizia Mancini, Alberta Tomassini, Fabio Sciubba, Tullio Scopigno, Daniela Uccelletti, and Alfredo Miccheli
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2-hydroxyisobutyric acid ,Caenorhabditis elegans ,ageing ,lipid metabolism ,oxidative stress ,high-glucose diet ,Biology (General) ,QH301-705.5 - Abstract
High levels of 2-hydroxyisobutyric acid (2-HIBA) were found in urines of patients with obesity and hepatic steatosis, suggesting a potential involvement of this metabolite in clinical conditions. The gut microbial origin of 2-HIBA was hypothesized, however its actual origin and role in biological processes are still not clear. We investigated how treatment with 2-HIBA affected the physiology of the model organism Caenorhabditis elegans, in both standard and high-glucose diet (HGD) growth conditions, by targeted transcriptomic and metabolomic analyses, Coherent Anti-Stokes Raman Scattering (CARS) and two-photon fluorescence microscopy. In standard conditions, 2-HIBA resulted particularly effective to extend the lifespan, delay ageing processes and stimulate the oxidative stress resistance in wild type nematodes through the activation of insulin/IGF-1 signaling (IIS) and p38 MAPK pathways and, consequently, through a reduction of ROS levels. Moreover, variations of lipid accumulation observed in treated worms correlated with transcriptional levels of fatty acid synthesis genes and with the involvement of peptide transporter PEP-2. In HGD conditions, the effect of 2-HIBA on C. elegans resulted in a reduction of the lipid droplets deposition, accordingly with an increase of acs-2 gene transcription, involved in β-oxidation processes. In addition, the pro-longevity effect appeared to be correlated to higher levels of tryptophan, which may play a role in restoring the decreased viability observed in the HGD untreated nematodes.
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- 2022
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14. In Vitro Probiotic Properties and In Vivo Anti-Ageing Effects of Lactoplantibacillus plantarum PFA2018AU Strain Isolated from Carrots on Caenorhabditis elegans
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Laura Pompa, Arianna Montanari, Alberta Tomassini, Michele Maria Bianchi, Walter Aureli, Alfredo Miccheli, Daniela Uccelletti, and Emily Schifano
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probiotic ,carrots ,L. plantarum ,C. elegans ,Biology (General) ,QH301-705.5 - Abstract
Lactic acid bacteria (LAB) share and provide several beneficial effects on human health, such as the release of bioactive metabolites, pathogen competition, and immune stimulation. The two major reservoirs of probiotic microorganisms are the human gastro-intestinal tract and fermented dairy products. However, other sources, such as plant-based foods, represent important alternatives thanks to their large distribution and nutritive value. Here, the probiotic potential of autochthonous Lactiplantibacillus plantarum PFA2018AU, isolated from carrots harvested in Fucino highland, Abruzzo (Italy), was investigated through in vitro and in vivo approaches. The strain was sent to the biobank of Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna in Italy for the purpose of patent procedures under the Budapest Treaty. The isolate showed high survival capability under in vitro simulated gastro-intestinal conditions, antibiotic susceptibility, hydrophobicity, aggregation, and the ability to inhibit the in vitro growth of Salmonella enterica serovar Typhimurium, Listeria monocytogenes, Pseudomonas aeruginosa, and Staphylococcus aureus pathogens. Caenorhabditis elegans was used as the in vivo model in order to analyse prolongevity and anti-ageing effects. L. plantarum PFA2018AU significantly colonised the gut of the worms, extended their lifespan, and stimulated their innate immunity. Overall, these results showed that autochthonous LAB from vegetables, such as carrots, have functional features that can be considered novel probiotic candidates.
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- 2023
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15. NMR-based metabolomics for investigating urinary profiles of metal carpentry workers exposed to welding fumes and volatile organic compounds.
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De Rosa, Michele, Giampaoli, Ottavia, Sciubba, Fabio, Marini, Federico, Tranfo, Giovanna, Sisto, Renata, Miccheli, Alfredo, Tricarico, Laura, Fetoni, Anna Rita, and Spagnoli, Mariangela
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- 2024
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16. Biostimulant Effects of Chaetomium globosum and Minimedusa polyspora Culture Filtrates on Cichorium intybus Plant: Growth Performance and Metabolomic Traits
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Veronica Spinelli, Elisa Brasili, Fabio Sciubba, Andrea Ceci, Ottavia Giampaoli, Alfredo Miccheli, Gabriella Pasqua, and Anna Maria Persiani
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Chaetomium globosum ,Minimedusa polyspora ,fungal culture filtrates ,fungi ,biostimulants ,plant growth promotion ,Plant culture ,SB1-1110 - Abstract
In this study, we investigated the biostimulant effect of fungal culture filtrates obtained from Chaetomium globosum and Minimedusa polyspora on growth performance and metabolomic traits of chicory (Cichorium intybus) plants. For the first time, we showed that M. polyspora culture filtrate exerts a direct plant growth-promoting effect through an increase of biomass, both in shoots and roots, and of the leaf area. Conversely, no significant effect on morphological traits and biomass yield was observed in C. intybus plants treated with C. globosum culture filtrate. Based on 1H-NMR metabolomics data, differential metabolites and their related metabolic pathways were highlighted. The treatment with C. globosum and M. polyspora culture filtrates stimulated a common response in C. intybus roots involving the synthesis of 3-OH-butyrate through the decrease in the synthesis of fatty acids and sterols, as a mechanism balancing the NADPH/NADP+ ratio. The fungal culture filtrates differently triggered the phenylpropanoid pathway in C. intybus plants: C. globosum culture filtrate increased phenylalanine and chicoric acid in the roots, whereas M. polyspora culture filtrate stimulated an increase of 4-OH-benzoate. Chicoric acid, whose biosynthetic pathway in the chicory plant is putative and still not well known, is a very promising natural compound playing an important role in plant defense. On the contrary, benzoic acids serve as precursors for a wide variety of essential compounds playing crucial roles in plant fitness and defense response activation. To the best of our knowledge, this is the first study that shows the biostimulant effect of C. globosum and M. polyspora culture filtrates on C. intybus growth and metabolome, increasing the knowledge on fungal bioresources for the development of biostimulants.
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- 2022
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17. NMR Untargeted and HPLC-MS/MS Targeted Metabolomic Approaches for Evaluating Styrene Exposure in the Urine of Shipyard Workers
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Giampaoli, Ottavia, primary, Sciubba, Fabio, additional, Tranfo, Giovanna, additional, Sisto, Renata, additional, Pigini, Daniela, additional, De Rosa, Michele, additional, Patriarca, Adriano, additional, Miccheli, Alfredo, additional, Fetoni, Anna Rita, additional, Tricarico, Laura, additional, and Spagnoli, Mariangela, additional
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- 2024
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18. Gut metabolomics profiling of non-small cell lung cancer (NSCLC) patients under immunotherapy treatment
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Andrea Botticelli, Pamela Vernocchi, Federico Marini, Andrea Quagliariello, Bruna Cerbelli, Sofia Reddel, Federica Del Chierico, Francesca Di Pietro, Raffaele Giusti, Alberta Tomassini, Ottavia Giampaoli, Alfredo Miccheli, Ilaria Grazia Zizzari, Marianna Nuti, Lorenza Putignani, and Paolo Marchetti
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Medicine - Abstract
Abstract Background Despite the efficacy of immune checkpoint inhibitors (ICIs) only the 20–30% of treated patients present long term benefits. The metabolic changes occurring in the gut microbiota metabolome are herein proposed as a factor potentially influencing the response to immunotherapy. Methods The metabolomic profiling of gut microbiota was characterized in 11 patients affected by non-small cell lung cancer (NSCLC) treated with nivolumab in second-line treatment with anti-PD-1 nivolumab. The metabolomics analyses were performed by GC–MS/SPME and 1H-NMR in order to detect volatile and non-volatile metabolites. Metabolomic data were processed by statistical profiling and chemometric analyses. Results Four out of 11 patients (36%) presented early progression, while the remaining 7 out of 11 (64%) presented disease progression after 12 months. 2-Pentanone (ketone) and tridecane (alkane) were significantly associated with early progression, and on the contrary short chain fatty acids (SCFAs) (i.e., propionate, butyrate), lysine and nicotinic acid were significantly associated with long-term beneficial effects. Conclusions Our preliminary data suggest a significant role of gut microbiota metabolic pathways in affecting response to immunotherapy. The metabolic approach could be a promising strategy to contribute to the personalized management of cancer patients by the identification of microbiota-linked “indicators” of early progressor and long responder patients.
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- 2020
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19. Longitudinal Multi-Omics Study of a Mother-Infant Dyad from Breastfeeding to Weaning: An Individualized Approach to Understand the Interactions Among Diet, Fecal Metabolome and Microbiota Composition
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Giorgia Conta, Federica Del Chierico, Sofia Reddel, Federico Marini, Fabio Sciubba, Giorgio Capuani, Alberta Tomassini, Maria Enrica Di Cocco, Nicola Laforgia, Maria Elisabetta Baldassarre, Lorenza Putignani, and Alfredo Miccheli
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gut microbiota ,NMR-based metabolomics ,metabolic profiling ,breast milk ,targeted metagenomics ,HMOs ,Biology (General) ,QH301-705.5 - Abstract
The development of the human gut microbiota is characterized by a dynamic sequence of events from birth to adulthood, which make the gut microbiota unique for everyone. Its composition and metabolism may play a critical role in the intestinal homeostasis and health. We propose a study on a single mother-infant dyad to follow the dynamics of an infant fecal microbiota and metabolome changes in relation to breast milk composition during the lactation period and evaluate the changes induced by introduction of complementary food during the weaning period. Nuclear Magnetic Resonance (NMR)-based metabolomics was performed on breast milk and, together with 16S RNA targeted-metagenomics analysis, also on infant stool samples of a mother-infant dyad collected over a period running from the exclusive breastfeeding diet to weaning. Breast milk samples and neonatal stool samples were collected from the 4th to the 10th month of life. Both specimens were collected from day 103 to day 175, while from day 219–268 only stool samples were examined. An exploratory and a predictive analysis were carried out by means of Common component and specific weight analysis and multi-block partial least squares discriminant analysis, respectively. Stools collected during breastfeeding and during a mixed fruit/breastfeeding diet were characterized by high levels of fucosyl-oligosaccharides and glycolysis intermediates, including succinate and formate. The transition to a semi-solid food diet was characterized by several changes in fecal parameters: increase in short-chain fatty acids (SCFAs) levels, including acetate, propionate and butyrate, dissapearance of HMOs and the shift in the community composition, mainly occurring within the Firmicutes phylum. The variations in the fecal metabolome reflected the infant’s diet transition, while the composition of the microbiota followed a more complex and still unstable behavior.
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- 2021
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20. Pisum sativum L. 'Eso': Metabolic Profiling of Yellow Seeds to Define the Optimal Harvest Time.
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Patriarca, Adriano, Sciubba, Fabio, Tomassini, Alberta, Giampaoli, Ottavia, De Rosa, Michele, Marini, Federico, Aureli, Walter, Miccheli, Alfredo, and Brasili, Elisa
- Subjects
HARVESTING time ,ESSENTIAL amino acids ,SEED harvesting ,ANIMAL feeds ,METABOLITES ,PEAS ,LEGUMES - Abstract
The yellow pea (Pisum sativum L. 'Eso', sin. Lathyrus oleracaeus Lam.(YP)) is an annual herbaceous plant that belongs to the Fabaceae family. Peas, along with other legumes, are an excellent source of proteins and essential amino acids; the yellow variety is known for maintaining a good protein profile even if subjected to industrial processing. However, the presence of antinutrients, such as phytates and oligosaccharides, limits its consumption as a fresh legume to its use as a source of isolated proteins or for animal feed. The aim of the study is to evaluate the changes in the entire phytochemical profile of YP seeds as a function of the harvest time. YPs harvested at about 40, 50, 60, and 70 days from sowing were examined by high-resolution NMR spectroscopy employing
1 H-NMR,1 H-1 H TOCSY, and1 H-13 C HSQC. In total, 40 molecular species were identified and quantified; it was observed that there was a monotonous decrease in amino acids, carbohydrates, and secondary metabolites as a function of time. Antinutrient levels increased, but only in later sampling times. This study identified the optimal harvest time for yellow peas "Eso" in the fortieth day from sowing, adding new information about the best nutritional outcome for humans. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
21. Biomonitoring of Exposure to Urban Pollutants and Oxidative Stress during the COVID-19 Lockdown in Rome Residents
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Flavia Buonaurio, Francesca Borra, Daniela Pigini, Enrico Paci, Mariangela Spagnoli, Maria Luisa Astolfi, Ottavia Giampaoli, Fabio Sciubba, Alfredo Miccheli, Silvia Canepari, Carla Ancona, and Giovanna Tranfo
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benzene ,COVID-19 pandemic ,lockdown ,Rome ,elements ,urban traffic ,Chemical technology ,TP1-1185 - Abstract
Background: The objective of this study is to evaluate the effects of traffic on human health comparing biomonitoring data measured during the COVID-19 lockdown, when restrictions led to a 40% reduction in airborne benzene in Rome and a 36% reduction in road traffic, to the same parameters measured in 2021. Methods: Biomonitoring was performed on 49 volunteers, determining the urinary metabolites of the most abundant traffic pollutants, such as benzene and PAHs, and oxidative stress biomarkers by HPLC/MS-MS, 28 elements by ICP/MS and metabolic phenotypes by NMR. Results: Means of s-phenylmercaputric acid (SPMA), metabolites of naphthalene and nitropyrene in 2020 are 20% lower than in 2021, while 1-OH-pyrene was 30% lower. A reduction of 40% for 8-oxo-7,8-dihydroguanosine (8-oxoGuo) and 8-oxo-7,8-dihydro-2-deoxyguanosine (8-oxodGuo) and 60% for 8-oxo-7,8-dihydroguanine (8-oxoGua) were found in 2020 compared to 2021. The concentrations of B, Co, Cu and Sb in 2021 are significantly higher than in the 2020. NMR untargeted metabolomic analysis identified 35 urinary metabolites. Results show in 2021 a decrease in succinic acid, a product of the Krebs cycle promoting inflammation. Conclusions: Urban pollution due to traffic is partly responsible for oxidative stress of nucleic acids, but other factors also have a role, enhancing the importance of communication about a healthy lifestyle in the prevention of cancer diseases.
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- 2022
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22. Can the FUT2 Non-secretor Phenotype Associated With Gut Microbiota Increase the Children Susceptibility for Type 1 Diabetes? A Mini Review
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Ottavia Giampaoli, Giorgia Conta, Riccardo Calvani, and Alfredo Miccheli
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FUT2 gene ,T1D ,gut microbiota ,secretor ,non-secretor ,HMOs ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The global toll of type 1 diabetes (T1D) has steadily increased over the last decades. It is now widely acknowledged that T1D pathophysiology is more complex than expected. Indeed, a multifaceted interplay between genetic, metabolic, inflammatory and environmental factors exists that leads to heterogeneous clinical manifestations across individuals. Children with non-secretor phenotype and those affected by T1D share low abundance of bifidobacteria, low content of short-chain fatty acids, intestinal phosphatase alkaline and a high incidence of inflammatory bowel diseases. In this context, host-gut microbiota dyad may represent a relevant contributor to T1D development and progression due to its crucial role in shaping host immunity and susceptibility to autoimmune conditions. The FUT2 gene is responsible for the composition and functional properties of glycans in mucosal tissues and bodily secretions, including human milk. FUT2 polymorphisms may profoundly influence gut microbiota composition and host susceptibility to viral infections and chronic inflammatory disease. In this minireview, the possible interplay between mothers' phenotype, host FUT2 genetic background and gut microbiota composition will be discussed in perspective of the T1D onset. The study of FUT2-gut microbiota interaction may add a new piece on the puzzling T1D etiology and unveil novel targets of intervention to contrast T1D development and progression. Dietary interventions, including the intake of α-(1, 2)-fucosyl oligosaccharides in formula milk and the use of specific prebiotics and probiotics, could be hypothesized.
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- 2020
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23. Gut metabolomics profiling of non-small cell lung cancer (NSCLC) patients under immunotherapy treatment
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Botticelli, Andrea, Vernocchi, Pamela, Marini, Federico, Quagliariello, Andrea, Cerbelli, Bruna, Reddel, Sofia, Del Chierico, Federica, Di Pietro, Francesca, Giusti, Raffaele, Tomassini, Alberta, Giampaoli, Ottavia, Miccheli, Alfredo, Zizzari, Ilaria Grazia, Nuti, Marianna, Putignani, Lorenza, and Marchetti, Paolo
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- 2020
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24. Leuconostoc mesenteroides Strains Isolated from Carrots Show Probiotic Features
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Emily Schifano, Alberta Tomassini, Adele Preziosi, Jorge Montes, Walter Aureli, Patrizia Mancini, Alfredo Miccheli, and Daniela Uccelletti
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probiotic ,carrots ,Caenorhabditis elegans ,pathogen resistance ,Biology (General) ,QH301-705.5 - Abstract
Lactic acid bacteria (LAB) share several beneficial effects on human organisms, such as bioactive metabolites’ release, pathogens’ competition and immune stimulation. This study aimed at determining the probiotic potential of autochthonous lactic acid bacteria isolated from carrots. In particular, the work reported the characterization at the species level of four LAB strains deriving from carrots harvested in Fucino highland, Abruzzo (Italy). Ribosomal 16S DNA analysis allowed identification of three strains belonging to Leuconostoc mesenteroides and a Weissella soli strain. In vitro and in vivo assays were performed to investigate the probiotic potential of the different isolates. Among them, L. mesenteroides C2 and L. mesenteroides C7 showed high survival percentages under in vitro simulated gastro-intestinal conditions, antibiotic susceptibly and the ability to inhibit in vitro growth against Salmonella enterica serovar Typhimurium, Listeria monocytogenes, Pseudomonas aeruginosa and Staphylococcus aureus pathogens. In parallel, the simple model Caenorhabditis elegans was used for in vivo screenings. L. mesenteroides C2 and L. mesenteroides C7 strains significantly induced pro-longevity effects, protection from pathogens’ infection and innate immunity stimulation. Overall, these results showed that some autochthonous LAB from vegetables such as carrots have functional features to be considered as novel probiotic candidates.
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- 2021
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25. Red Beetroot’s NMR-Based Metabolomics: Phytochemical Profile Related to Development Time and Production Year
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Ottavia Giampaoli, Fabio Sciubba, Giorgia Conta, Giorgio Capuani, Alberta Tomassini, Giorgio Giorgi, Elisa Brasili, Walter Aureli, and Alfredo Miccheli
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red beetroot ,seasonality ,harvest time ,NMR-based metabolomics ,inorganic nitrates ,dopamine ,Chemical technology ,TP1-1185 - Abstract
Red beetroot (RB) is a well-known health-promoting food consumed worldwide. RB is commonly used in food processing and manufacturing thanks to the high content of components that can also be employed as natural coloring agents. These bioactive molecules vary their concentration depending on beetroot seasonality, harvest time and climate conditions. The first objective of this study was to evaluate the variation of the RB phytochemical profile related to the root development during three different harvest times, using an 1H-NMR-based metabolomic approach. Changes of carbohydrates and secondary metabolite concentrations were observed from July to September. Secondly, we compared the metabolic profiles of the final processed beet juices in three different production years to observe the effect of climate conditions on the RB’s final product metabotype. A PCA analysis performed on juice extracts showed that production years 2016 and 2017 were characterized by a high content of choline and betaine, while 2018 by a high content of amino acids and dopamine and a low content of inorganic nitrates. This study suggests that the harvest time and roots growth conditions could be used to modulate the RB phytochemical profile, according to the final requirements of use, food or coloring agent source.
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- 2021
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26. Metabolic Biomarkers of Red Beetroot Juice Intake at Rest and after Physical Exercise
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Giampaoli, Ottavia, primary, Ieno, Cristian, additional, Sciubba, Fabio, additional, Spagnoli, Mariangela, additional, Miccheli, Alfredo, additional, Tomassini, Alberta, additional, Aureli, Walter, additional, and Fattorini, Luigi, additional
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- 2023
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27. In Vitro Probiotic Properties and In Vivo Anti-Ageing Effects of Lactoplantibacillus plantarum PFA2018AU Strain Isolated from Carrots on Caenorhabditis elegans
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Pompa, Laura, primary, Montanari, Arianna, additional, Tomassini, Alberta, additional, Bianchi, Michele Maria, additional, Aureli, Walter, additional, Miccheli, Alfredo, additional, Uccelletti, Daniela, additional, and Schifano, Emily, additional
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- 2023
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28. Metabolic biomarkers of red beetroot juice Intake at rest and after physical exercise
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Ottavia Giampaoli, Cristian Ieno, Fabio Sciubba, Mariangela Spagnoli, Alfredo Miccheli, Alberta Tomassini, Walter Aureli, and Luigi Fattorini
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food intake biomarkers ,Nutrition and Dietetics ,red beetroot juice ,metabolic profiling ,NMR-based metabolomics ,physical activity ,Food Science - Abstract
Background: Red beetroot is known to be a health-promoting food. However, little attention is placed on intestinal bioactive compound absorption. The aim of the study was to assess the urinary red beetroot juice (RBJ) intake biomarkers and possible differences in RBJ’s micronutrient absorption at rest or after physical exercise. Methods: This is a three-armed, single-blind study, involving seven healthy volunteers which were randomly divided into three groups and alternatively assigned to three experimental sessions: RBJ intake at rest, RBJ intake with physical activity, and placebo intake with physical activity. For each session, urine samples were collected before and 120, 180, and 240 min after the intake of RBJ or placebo. The same sampling times were employed for the experimental session at rest. The RBJ metabolic composition was also characterized to identify the urinary biomarkers derived from the intake. Results: 4-methylpyridine-2-carboxylic acid, dopamine-3-O-sulfate, glutamine, and 3-hydroxyisobutyrate were identified as RBJ intake biomarkers. Physical activity significantly increased only the dopamine-3-O-sulfate excretion 120 min after RBJ intake. Conclusions: Urinary dopamine-3-O-sulfate is related to RBJ dopamine content, while 4-methylpyridine-2-carboxylic acid is a betanin or betalamic acid catabolite. The different excretions of these metabolites following physical activity suggest a possible effect on the RBJ uptake depending on different transport processes through the mucosa, namely diffusion-mediated transport for dopamine and saturable transcellular transport for betalamic acid derivatives. These results open new perspectives in improving the absorption of natural bioactive molecules through physical activity.
- Published
- 2023
29. Olive Mill Wastes: A Source of Bioactive Molecules for Plant Growth and Protection against Pathogens
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Fabio Sciubba, Laura Chronopoulou, Daniele Pizzichini, Vincenzo Lionetti, Claudia Fontana, Rita Aromolo, Silvia Socciarelli, Loretta Gambelli, Barbara Bartolacci, Enrico Finotti, Anna Benedetti, Alfredo Miccheli, Ulderico Neri, Cleofe Palocci, and Daniela Bellincampi
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Olea europaea L. ,olive mill wastes ,plant growth ,plant nutrition ,plant protection ,phenols ,Biology (General) ,QH301-705.5 - Abstract
Olive oil production generates high amounts of liquid and solid wastes. For a long time, such complex matrices were considered only as an environmental issue, due to their polluting properties. On the other hand, olive mill wastes (OMWs) exert a positive effect on plant growth when applied to soil due to the high content of organic matter and mineral nutrients. Moreover, OMWs also exhibit antimicrobial activity and protective properties against plant pathogens possibly due to the presence of bioactive molecules including phenols and polysaccharides. This review covers the recent advances made in the identification, isolation, and characterization of OMW-derived bioactive molecules able to influence important plant processes such as plant growth and defend against pathogens. Such studies are relevant from different points of view. First, basic research in plant biology may benefit from the isolation and characterization of new biomolecules to be potentially applied in crop growth and protection against diseases. Moreover, the valorization of waste materials is necessary for the development of a circular economy, which is foreseen to drive the future development of a more sustainable agriculture.
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- 2020
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30. NMR-Based Metabolomic Study of Purple Carrot Optimal Harvest Time for Utilization as a Source of Bioactive Compounds
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Fabio Sciubba, Alberta Tomassini, Giorgio Giorgi, Elisa Brasili, Gabriella Pasqua, Giorgio Capuani, Walter Aureli, and Alfredo Miccheli
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Daucus carota ssp. sativus var. atrorubens Alef. ,NMR-based metabolic profiling ,carrot development ,harvest time ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The carrot (Daucus carota L.), one of the most important vegetable crops in the world, is recognized as a source of different compounds with healthy properties. Due to their high content of anthocyanins, purple carrots have been used as a natural colorant source to face the increasing demand of consumers for non-synthetic products. However, the root developmental stage can greatly affect the phytochemical composition and, in this regard, the identification of chemical biomarkers for the optimal harvest time would be of paramount interest both from a nutritional point of view and for the agri-food industry. In the present work, the metabolic profiling of purple carrots was monitored over four months using high-resolution 1H NMR spectroscopy. Several metabolites were identified, and their quantitative variations allowed for the investigation of the carrot development processes. The metabolic profile analysis showed an increase in amino acid, NAD, and caffeic acid levels during carrot development. A more tardive harvest in December entailed an increase in levels of luteolin-7-O-glucoside, chlorogenic acid, falcarinol, and γ-aminobutyrate, and a decrease in carotenoids and ω-6 fatty acid. The results showed how the harvest time affects the composition in terms of flavonoids, phenols, and polyacetylenes, therefore, improving the bioactive compound content.
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- 2020
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31. Fused Omics Data Models Reveal Gut Microbiome Signatures Specific of Inactive Stage of Juvenile Idiopathic Arthritis in Pediatric Patients
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Pamela Vernocchi, Federico Marini, Giorgio Capuani, Alberta Tomassini, Giorgia Conta, Federica Del Chierico, Clara Malattia, Fabrizio De Benedetti, Alberto Martini, Bruno Dallapiccola, E. H. Pieter van Dijkhuizen, Alfredo Miccheli, and Lorenza Putignani
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gut microbiome ,gut metabolome ,volatile-organic compounds ,Non-VOCs ,operational taxonomic units ,fused omics data ,Biology (General) ,QH301-705.5 - Abstract
Juvenile idiopathic arthritis (JIA) is the most common rheumatic disease in children. Herein, we evaluated the relationship between the gut microbiome (GM) and disease phenotype by an integrated omics fused approach. In a multicenter, observational cohort study, stools from Italian JIA patients were collected at baseline, active, and inactive disease stages, and their GM compared to healthy controls (CTRLs). The microbiota metabolome was analyzed to detect volatile- and non-volatile organic compounds (VOCs); the data were fused with operational taxonomic units (OTUs) from 16S RNA targeted-metagenomics and classified by chemometric models. Non-VOCs did not characterize JIA patients nor JIA activity stages compared to CTRLs. The core of VOCs, (Ethanol, Methyl-isobutyl-ketone, 2,6-Dimethyl-4-heptanone and Phenol) characterized patients at baseline and inactive disease stages, while the OTUs represented by Ruminococcaceae, Lachnospiraceae and Clostridiacea discriminated between JIA inactive stage and CTRLs. No differences were highlighted amongst JIA activity stages. Finally, the fused data discriminated inactive and baseline stages versus CTRLs, based on the contribution of the invariant core of VOCs while Ruminococcaceae concurred for the inactive stage versus CTRLs comparison. In conclusion, the GM signatures enabled to distinguish the inactive disease stage from CTRLs.
- Published
- 2020
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32. Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype.
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Pamela Vernocchi, Federica Del Chierico, Alessandra Russo, Fabio Majo, Martina Rossitto, Mariacristina Valerio, Luca Casadei, Antonietta La Storia, Francesca De Filippis, Cristiano Rizzo, Cesare Manetti, Paola Paci, Danilo Ercolini, Federico Marini, Ersilia Vita Fiscarelli, Bruno Dallapiccola, Vincenzina Lucidi, Alfredo Miccheli, and Lorenza Putignani
- Subjects
Medicine ,Science - Abstract
BackgroundCystic fibrosis (CF) is a disorder affecting the respiratory, digestive, reproductive systems and sweat glands. This lethal hereditary disease has known or suspected links to the dysbiosis gut microbiota. High-throughput meta-omics-based approaches may assist in unveiling this complex network of symbiosis modifications.ObjectivesThe aim of this study was to provide a predictive and functional model of the gut microbiota enterophenotype of pediatric patients affected by CF under clinical stability.MethodsThirty-one fecal samples were collected from CF patients and healthy children (HC) (age range, 1-6 years) and analysed using targeted-metagenomics and metabolomics to characterize the ecology and metabolism of CF-linked gut microbiota. The multidimensional data were low fused and processed by chemometric classification analysis.ResultsThe fused metagenomics and metabolomics based gut microbiota profile was characterized by a high abundance of Propionibacterium, Staphylococcus and Clostridiaceae, including Clostridium difficile, and a low abundance of Eggerthella, Eubacterium, Ruminococcus, Dorea, Faecalibacterium prausnitzii, and Lachnospiraceae, associated with overexpression of 4-aminobutyrate (GABA), choline, ethanol, propylbutyrate, and pyridine and low levels of sarcosine, 4-methylphenol, uracil, glucose, acetate, phenol, benzaldehyde, and methylacetate. The CF gut microbiota pattern revealed an enterophenotype intrinsically linked to disease, regardless of age, and with dysbiosis uninduced by reduced pancreatic function and only partially related to oral antibiotic administration or lung colonization/infection.ConclusionsAll together, the results obtained suggest that the gut microbiota enterophenotypes of CF, together with endogenous and bacterial CF biomarkers, are direct expression of functional alterations at the intestinal level. Hence, it's possible to infer that CFTR impairment causes the gut ecosystem imbalance.This new understanding of CF host-gut microbiota interactions may be helpful to rationalize novel clinical interventions to improve the affected children's nutritional status and intestinal function.
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- 2018
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33. Abscisic acid-induced microheterogeneity in phospholipid vesicles. A fluorescence study.
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Parasassi, T, De Stasio, G, Miccheli, A, Bruno, F, Conti, F, and Gratton, E
- Subjects
Cyclohexanecarboxylic Acids ,Abscisic Acid ,Diphenylhexatriene ,Dimyristoylphosphatidylcholine ,Phosphatidylethanolamines ,Liposomes ,Spectrometry ,Fluorescence ,Thermodynamics ,Models ,Biological ,Spectrometry ,Fluorescence ,Models ,Biological ,Biophysics ,Physical Sciences ,Chemical Sciences ,Biological Sciences - Abstract
Changes in the thermal behavior of DMPC (dimyristoyl-L-phosphatidylcholine) and an equimolar mixture of DMPC and DMPE (dimyristoyl-L-phosphatidylethanolamine) induced by the plant hormone abscisic acid (ABA) have been investigated using fluorescent probes. The fluorescence decay of the hydrophobic probe 1,6-diphenyl-1,3,5-hexatriene (DPH) in these vesicles has been measured using frequency-domain fluorometry, and has been analyzed using both models of discrete exponential components and continuous lifetime distributions. In the DMPC vesicles, using the distributional approach, higher center and width values were observed in the presence of abscisic acid (ABA), indicating a decrease in the dielectric constant of the lipid phase that we attribute to a decrease in the water concentration within the bilayer. Moreover, the presence of ABA in the liposomes increased the phospholipid phase transition temperature. The addition of ABA to the DMPC/DMPE mixture strongly increased the microheterogeneity of the system as reported by the FWHM (full-width at half-maximum) of the distributional approach.
- Published
- 1990
34. 2-hydroxyisobutyric acid (2-HIBA) modulates ageing and fat deposition in Caenorhabditis elegans
- Author
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Schifano, Emily, primary, Conta, Giorgia, additional, Preziosi, Adele, additional, Ferrante, Carino, additional, Batignani, Giovanni, additional, Mancini, Patrizia, additional, Tomassini, Alberta, additional, Sciubba, Fabio, additional, Scopigno, Tullio, additional, Uccelletti, Daniela, additional, and Miccheli, Alfredo, additional
- Published
- 2022
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35. Combination of Metabolomic and Proteomic Analysis Revealed Different Features among Lactobacillus delbrueckii Subspecies bulgaricus and lactis Strains While In Vivo Testing in the Model Organism Caenorhabditis elegans Highlighted Probiotic Properties
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Elena Zanni, Emily Schifano, Sara Motta, Fabio Sciubba, Claudio Palleschi, Pierluigi Mauri, Giuditta Perozzi, Daniela Uccelletti, Chiara Devirgiliis, and Alfredo Miccheli
- Subjects
Lactobacillus delbrueckii metabolism ,bacterial folate biosynthesis ,bacterial galactose metabolism ,tagatose pathway ,lactic acid bacteria ,foodborne bacteria ,Microbiology ,QR1-502 - Abstract
Lactobacillus delbrueckii represents a technologically relevant member of lactic acid bacteria, since the two subspecies bulgaricus and lactis are widely associated with fermented dairy products. In the present work, we report the characterization of two commercial strains belonging to L. delbrueckii subspecies bulgaricus, lactis and a novel strain previously isolated from a traditional fermented fresh cheese. A phenomic approach was performed by combining metabolomic and proteomic analysis of the three strains, which were subsequently supplemented as food source to the model organism Caenorhabditis elegans, with the final aim to evaluate their possible probiotic effects. Restriction analysis of 16S ribosomal DNA revealed that the novel foodborne strain belonged to L. delbrueckii subspecies lactis. Proteomic and metabolomic approaches showed differences in folate, aminoacid and sugar metabolic pathways among the three strains. Moreover, evaluation of C. elegans lifespan, larval development, brood size, and bacterial colonization capacity demonstrated that L. delbrueckii subsp. bulgaricus diet exerted beneficial effects on nematodes. On the other hand, both L. delbrueckii subsp. lactis strains affected lifespan and larval development. We have characterized three strains belonging to L. delbrueckii subspecies bulgaricus and lactis highlighting their divergent origin. In particular, the two closely related isolates L. delbrueckii subspecies lactis display different galactose metabolic capabilities. Moreover, the L. delbrueckii subspecies bulgaricus strain demonstrated potential probiotic features. Combination of omic platforms coupled with in vivo screening in the simple model organism C. elegans is a powerful tool to characterize industrially relevant bacterial isolates.
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- 2017
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36. Gut Microbiota Functional Traits, Blood pH, and Anti-GAD Antibodies Concur in the Clinical Characterization of T1D at Onset
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Del Chierico, Federica, primary, Conta, Giorgia, additional, Matteoli, Maria Cristina, additional, Fierabracci, Alessandra, additional, Reddel, Sofia, additional, Macari, Gabriele, additional, Gardini, Simone, additional, Guarrasi, Valerio, additional, Levi Mortera, Stefano, additional, Marzano, Valeria, additional, Vernocchi, Pamela, additional, Sciubba, Fabio, additional, Marini, Federico, additional, Deodati, Annalisa, additional, Rapini, Novella, additional, Cianfarani, Stefano, additional, Miccheli, Alfredo, additional, and Putignani, Lorenza, additional
- Published
- 2022
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37. Precision Medicine: Determination of Ribavirin Urinary Metabolites in Relation to Drug Adverse Effects in HCV Patients
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Giampaoli, Ottavia, primary, Sciubba, Fabio, additional, Biliotti, Elisa, additional, Spagnoli, Mariangela, additional, Calvani, Riccardo, additional, Tomassini, Alberta, additional, Capuani, Giorgio, additional, Miccheli, Alfredo, additional, and Taliani, Gloria, additional
- Published
- 2022
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38. Two essays concerning complexity, language and machine learning
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Miccheli, Marco
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Machine Learning ,economic complexity ,language ,bayesian inference ,complexity ,translation ,Settore FIS/07 - Fisica Applicata(Beni Culturali, Ambientali, Biol.e Medicin) ,Settore FIS/02 - Fisica Teorica, Modelli e Metodi Matematici - Published
- 2022
39. Precision Medicine: Determination of Ribavirin Urinary Metabolites in Relation to Drug Adverse Effects in HCV Patients
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Giampaoli, O., Sciubba, F., Biliotti, E., Spagnoli, M., Calvani, Riccardo, Tomassini, A., Capuani, G., Miccheli, A., Taliani, G., Calvani R. (ORCID:0000-0001-5472-2365), Giampaoli, O., Sciubba, F., Biliotti, E., Spagnoli, M., Calvani, Riccardo, Tomassini, A., Capuani, G., Miccheli, A., Taliani, G., and Calvani R. (ORCID:0000-0001-5472-2365)
- Abstract
The most commonly used antiviral treatment against hepatitis C virus is a combination of direct-acting antivirals (DAAs) and ribavirin (RBV), which leads to a shortened duration of therapy and a sustained virologic response until 98%. Nonetheless, several dose-related side effects of RBV could limit its applications. This study aims to measure the urinary concentration of RBV and its main metabolites in order to evaluate the drug metabolism ability of HCV patients and to evaluate the adverse effects, such as anemia, with respect to RBV metabolite levels. RBV and its proactive and inactive metabolites were identified and quantified in the urine of 17 HCV males with severe liver fibrosis using proton nuclear magnetic resonance (1H-NMR) at the fourth week (TW4) and at the twelfth week of treatment (EOT). Four prodrug urinary metabolites, including RBV, were identified and three of them were quantified. At both the TW4 and EOT stages, six HCV patients were found to maintain high concentrations of RBV, while another six patients maintained a high level of RBV proactive metabolites, likely due to nucleosidase activity. Furthermore, a negative correlation between the reduction in hemoglobin (Hb) and proactive forms was observed, according to RBV-triphosphate accumulation causing the hemolysis. These findings represent a proof of concept regarding tailoring the drug dose in relation to the specific metabolic ability of the individual, as expected by the precision medicine approach.
- Published
- 2022
40. Syntrophy drives the microbial electrochemical oxidation of toluene in a continuous-flow “bioelectric well”
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Tucci, M., Milani, A., Resitano, M., Cruz Viggi, C., Giampaoli, O., Miccheli, A., Crognale, S., Matturro, B., Rossetti, S., Harnisch, Falk, Aulenta, F., Tucci, M., Milani, A., Resitano, M., Cruz Viggi, C., Giampaoli, O., Miccheli, A., Crognale, S., Matturro, B., Rossetti, S., Harnisch, Falk, and Aulenta, F.
- Abstract
Microbial electrochemical technologies (MET) are promising for the remediation of groundwater pollutants such as petroleum hydrocarbons (PH). Indeed, MET can provide virtually inexhaustible electron donors or acceptors directly in the subsurface environment. However, the degradation mechanisms linking contaminants removal to electric current flow are still largely unknown, hindering the development of robust design criteria.Here, we analysed the degradation of toluene, a model PH, in a bioelectrochemical reactor known as “bioelectric well” operated in continuous-flow mode at various influent toluene concentrations. With increasing concentration of toluene, the removal rate increased while the current tended to a plateau, hence the columbic efficiency decreased. Operation at open circuit confirmed that the bioelectrochemical degradation of toluene proceeded via a syntrophic pathway involving cooperation between different microbial populations. First of all, hydrocarbon degraders quickly converted toluene into metabolic intermediates probably by breaking the aromatic ring upon fumarate addition. Subsequently, fermentative bacteria converted these intermediates into volatile fatty acids (VFA) and likely also H2, which were then used as substrates by electroactive microorganisms forming the anodic biofilm. As toluene degradation is faster than subsequent conversion steps, the increase in intermediate concentration could not result in a current increase. This work provides valuable insights on the syntrophic degradation of BTEX, which are essential for the application of microbial electrochemical system to groundwater remediation of petroleum hydrocarbons.
- Published
- 2022
41. Urinary 1H-NMR-based metabolic profiling of children with NAFLD undergoing VSL#3 treatment
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Miccheli, A, Capuani, G, Marini, F, Tomassini, A, Praticò, G, Ceccarelli, S, Gnani, D, Baviera, G, Alisi, A, Putignani, L, and Nobili, V
- Published
- 2015
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42. Biomonitoring of Exposure to Urban Pollutants and Oxidative Stress during the COVID-19 Lockdown in Rome Residents
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Buonaurio, Flavia, primary, Borra, Francesca, additional, Pigini, Daniela, additional, Paci, Enrico, additional, Spagnoli, Mariangela, additional, Astolfi, Maria Luisa, additional, Giampaoli, Ottavia, additional, Sciubba, Fabio, additional, Miccheli, Alfredo, additional, Canepari, Silvia, additional, Ancona, Carla, additional, and Tranfo, Giovanna, additional
- Published
- 2022
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43. Biostimulant Effects of Chaetomium globosum and Minimedusa polyspora Culture Filtrates on Cichorium intybus Plant: Growth Performance and Metabolomic Traits
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Spinelli, Veronica, primary, Brasili, Elisa, additional, Sciubba, Fabio, additional, Ceci, Andrea, additional, Giampaoli, Ottavia, additional, Miccheli, Alfredo, additional, Pasqua, Gabriella, additional, and Persiani, Anna Maria, additional
- Published
- 2022
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44. Hyperbaric Exposure of Scuba Divers Affects the Urinary Excretion of Nucleic Acid Oxidation Products and Hypoxanthine
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Enrico Marchetti, Daniela Pigini, Mariangela Spagnoli, Giovanna Tranfo, Flavia Buonaurio, Fabio Sciubba, Ottavia Giampaoli, Alfredo Miccheli, Alessandro Pinto, Nazzareno De Angelis, and Luigi Fattorini
- Subjects
Male ,scuba-diving ,oxidative stress ,hyperbaric condition ,metabolomics ,hypoxanthine ,Health, Toxicology and Mutagenesis ,Diving ,Public Health, Environmental and Occupational Health ,Water ,Nucleic Acids ,Humans ,human activities ,Biomarkers - Abstract
In recent studies, oxidative stress after scuba diving has been explored by measuringurinary biomarkers in volunteers under controlled conditions. Dive depth and duration, watertemperature, and workload are all variables that can elicit metabolic responses. A controlled divingexperiment was performed in an indoor pool at 20, 30, and 40 m depths at a water temperature of32 ºC, on three different days. Samples of urine from five male scuba divers were taken before divingand at four time points after diving, and then tested for their concentration of five different oxidativestress biomarkers by means of liquid chromatography tandem mass spectrometry and by 1H nuclearmagnetic resonance metabolomics analysis. The results showed no variation in the five biomarkers after diving, but a decreasing trend was observed over the three days, with no differences among thethree depths. The lack of effect on oxidative stress biomarkers has been attributed to the comfortablewater temperature and to the absence of exercise in the divers during the experiment. Instead, anincrease in hypoxanthine excretion, which can be considered a biomarker sensitive to hyperbaric exposure, was found after diving. Finally, the results suggest a physiological mechanism of metabolicadaptation to a new condition.
- Published
- 2022
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45. Biostimulant Effects of
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Veronica, Spinelli, Elisa, Brasili, Fabio, Sciubba, Andrea, Ceci, Ottavia, Giampaoli, Alfredo, Miccheli, Gabriella, Pasqua, and Anna Maria, Persiani
- Abstract
In this study, we investigated the biostimulant effect of fungal culture filtrates obtained from
- Published
- 2022
46. The (in)visible side of biostimulation: application of 1H-NMR to reveal the biostimulating effect of Minimedusa polyspora and Chaetomium globosum culture filtrates on Cichorium intybus plants
- Author
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Spinelli, Veronica, Brasili, Elisa, Sciubba, Fabio, Ceci, Andrea, Giampaoli, Ottavia, Miccheli, Alfredo, Pasqua, Gabriella, and Persiani, Anna Maria
- Published
- 2022
47. Electrochemically-steered processes for polyhydroxyalkanoates production with mixed microbial cultures
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Salvatori, Gaia, DI LUZIO, Matteo, Marchetti, Angela, Giampaoli, Ottavia, Sciubba, Fabio, Miccheli, Alfredo, and Villano, Marianna
- Subjects
PHA ,PHA , Electro-Fermentation ,Electro-Fermentation - Published
- 2022
48. Gut microbiota functional traits, blood pH, and anti-GAD antibodies concur in the clinical characterization of T1D at onset
- Author
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Federica Del Chierico, Giorgia Conta, Maria Cristina Matteoli, Alessandra Fierabracci, Sofia Reddel, Gabriele Macari, Simone Gardini, Valerio Guarrasi, Stefano Levi Mortera, Valeria Marzano, Pamela Vernocchi, Fabio Sciubba, Federico Marini, Annalisa Deodati, Novella Rapini, Stefano Cianfarani, Alfredo Miccheli, and Lorenza Putignani
- Subjects
pediatrics ,insulin need ,type 1 diabetes (T1D) ,Catalysis ,Inorganic Chemistry ,Isobutyrates ,ketoacidosis ,microbial biomarkers ,RNA, Ribosomal, 16S ,gut microbiota ecology and metabolome ,anti-GAD antibody ,omics data integration ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Clostridiales ,Organic Chemistry ,General Medicine ,Hydrogen-Ion Concentration ,Settore MED/38 ,Malonates ,Gastrointestinal Microbiome ,Computer Science Applications ,Diabetes Mellitus, Type 1 ,Pyrimidines ,Purines ,Biomarkers - Abstract
Alterations of gut microbiota have been identified before clinical manifestation of type 1 diabetes (T1D). To identify the associations amongst gut microbiome profile, metabolism and disease markers, the 16S rRNA-based microbiota profiling and 1H-NMR metabolomic analysis were performed on stool samples of 52 T1D patients at onset, 17 T1D siblings and 57 healthy subjects (CTRL). Univariate, multivariate analyses and classification models were applied to clinical and -omic integrated datasets. In T1D patients and their siblings, Clostridiales and Dorea were increased and Dialister and Akkermansia were decreased compared to CTRL, while in T1D, Lachnospiraceae were higher and Collinsella was lower, compared to siblings and CTRL. Higher levels of isobutyrate, malonate, Clostridium, Enterobacteriaceae, Clostridiales, Bacteroidales, were associated to T1D compared to CTRL. Patients with higher anti-GAD levels showed low abundances of Roseburia, Faecalibacterium and Alistipes and those with normal blood pH and low serum HbA1c levels showed high levels of purine and pyrimidine intermediates. We detected specific gut microbiota profiles linked to both T1D at the onset and to diabetes familiarity. The presence of specific microbial and metabolic profiles in gut linked to anti-GAD levels and to blood acidosis can be considered as predictive biomarker associated progression and severity of T1D.
- Published
- 2022
49. Fungal-derived biostimulants boosting Cichorium intybus: effects of Chaetomium globosum and Minimedusa polyspora culture filtrates on growth performance and metabolomic traits
- Author
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Spinelli, Veronica, Brasili, Elisa, Sciubba, Fabio, Ceci, Andrea, Giampaoli, Ottavia, Miccheli, Alfredo, Pasqua, Gabriella, and Persiani, Anna Maria
- Published
- 2022
50. Hyperbaric Exposure of Scuba Divers Affects the Urinary Excretion of Nucleic Acid Oxidation Products and Hypoxanthine
- Author
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Marchetti, Enrico, primary, Pigini, Daniela, additional, Spagnoli, Mariangela, additional, Tranfo, Giovanna, additional, Buonaurio, Flavia, additional, Sciubba, Fabio, additional, Giampaoli, Ottavia, additional, Miccheli, Alfredo, additional, Pinto, Alessandro, additional, De Angelis, Nazzareno, additional, and Fattorini, Luigi, additional
- Published
- 2022
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