1. Effect of pooled tracheal sample testing on the probability of Mycoplasma hyopneumoniae detection.
- Author
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Serafini Poeta Silva AP, Mugabi R, Rotolo ML, Krantz S, Hu D, Robbins R, Hemker D, Diaz A, Tucker AW, Main R, Cano JP, Harms P, Wang C, and Clavijo MJ
- Subjects
- Animals, Swine, Polymerase Chain Reaction methods, DNA, Bacterial analysis, Sensitivity and Specificity, Specimen Handling methods, Probability, Mycoplasma hyopneumoniae isolation & purification, Mycoplasma hyopneumoniae genetics, Trachea microbiology, Pneumonia of Swine, Mycoplasmal diagnosis, Pneumonia of Swine, Mycoplasmal microbiology
- Abstract
Tracheal pooling for Mycoplasma hyopneumoniae (M. hyopneumoniae) DNA detection allows for decreased diagnostic cost, one of the main constraints in surveillance programs. The objectives of this study were to estimate the sensitivity of pooled-sample testing for the detection of M. hyopneumoniae in tracheal samples and to develop probability of M. hyopneumoniae detection estimates for tracheal samples pooled by 3, 5, and 10. A total of 48 M. hyopneumoniae PCR-positive field samples were pooled 3-, 5-, and 10-times using field M. hyopneumoniae DNA-negative samples and tested in triplicate. The sensitivity was estimated at 0.96 (95% credible interval [Cred. Int.]: 0.93, 0.98) for pools of 3, 0.95 (95% Cred. Int: 0.92, 0.98) for pools of 5, and 0.93 (95% Cred. Int.: 0.89, 0.96) for pools of 10. All pool sizes resulted in PCR-positive if the individual tracheal sample Ct value was < 33. Additionally, there was no significant decrease in the probability of detecting at least one M. hyopneumoniae-infected pig given any pool size (3, 5, or 10) of tracheal swabs. Furthermore, this manuscript applies the probability of detection estimates to various real-life diagnostic testing scenarios. Combining increased total animals sampled with pooling can be a cost-effective tool to maximize the performance of M. hyopneumoniae surveillance programs., (© 2024. The Author(s).)
- Published
- 2024
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