16 results on '"Rachelle Ihly"'
Search Results
2. Optically Generated Free-Carrier Collection from an All Single-Walled Carbon Nanotube Active Layer
- Author
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Jeffrey L. Blackburn, Lenore Kubie, Henry Wladkowski, William Rice, Kevin J. Watkins, Rachelle Ihly, and Bruce A. Parkinson
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Materials science ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,01 natural sciences ,law.invention ,Condensed Matter::Materials Science ,law ,Physics::Atomic and Molecular Clusters ,General Materials Science ,Physical and Theoretical Chemistry ,Absorption (electromagnetic radiation) ,Ohmic contact ,Photocurrent ,Range (particle radiation) ,Condensed Matter::Other ,business.industry ,Relaxation (NMR) ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Active layer ,Semiconductor ,Optoelectronics ,0210 nano-technology ,business - Abstract
Semiconducting single-walled carbon nanotubes' (SWCNTs) broad absorption range and all-carbon composition make them attractive materials for light harvesting. We report photoinduced charge transfer from both multichiral and single-chirality SWCNT films into atomically flat SnO2 and TiO2 crystals. Higher-energy second excitonic SWCNT transitions produce more photocurrent, demonstrating carrier injection rates are competitive with fast hot-exciton relaxation processes. A logarithmic relationship exists between photoinduced electron-transfer driving force and photocarrier collection efficiency, becoming more efficient with smaller diameter SWCNTs. Photocurrents are generated from both conventional sensitization and in the opposite direction with the semiconductor under accumulation and acting as an ohmic contact with only the p-type nanotubes. Finally, we demonstrate that SWCNT surfactant choice and concentration play a large role in photon conversion efficiency and present methods of maximizing photocurrent yields.
- Published
- 2018
3. Diameter-Dependent Optical Absorption and Excitation Energy Transfer from Encapsulated Dye Molecules toward Single-Walled Carbon Nanotubes
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Wim Wenseleers, Andrew J. Ferguson, Dylan H. Arias, Stein van Bezouw, Jochen Campo, Joeri Defillet, Justin C. Johnson, Sofie Cambré, Rachelle Ihly, and Jeffrey L. Blackburn
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spectroscopy ,Materials science ,Absorption spectroscopy ,Stacking ,General Physics and Astronomy ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,Photochemistry ,01 natural sciences ,7. Clean energy ,Article ,law.invention ,symbols.namesake ,law ,Ultrafast laser spectroscopy ,Molecule ,General Materials Science ,Spectroscopy ,energy transfer ,carbon nanotubes ,Physics ,General Engineering ,exciton dynamics ,solar photoconversion ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Chemistry ,symbols ,encapsulation ,0210 nano-technology ,Engineering sciences. Technology ,Excitation ,Raman scattering - Abstract
The hollow cores and well-defined diameters of single-walled carbon nanotubes (SWCNTs) allow for creation of one-dimensional hybrid structures by encapsulation of various molecules. Absorption and near-infrared photoluminescence-excitation (PLE) spectroscopy reveal that the absorption spectrum of encapsulated 1,3-bis[4-(dimethylamino)phenyl]-squaraine dye molecules inside SWCNTs is modulated by the SWCNT diameter, as observed through excitation energy transfer (EET) from the encapsulated molecules to the SWCNTs, implying a strongly diameter dependent stacking of the molecules inside the SWCNTs. Transient absorption spectroscopy, simultaneously probing the encapsulated dyes and the host SWCNTs, demonstrates this EET, which can be used as a route to diameter-dependent photosensitization, to be fast (sub-picosecond). A wide series of SWCNT samples is systematically characterized by absorption, PLE, and resonant Raman scattering (RRS), also identifying the critical diameter for squaraine filling. In addition, we find that SWCNT filling does not limit the selectivity of subsequent separation protocols (including polyfluorene polymers for isolating only semiconducting SWCNTs and aqueous two-phase separation for enrichment of specific SWCNT chiralities). The design of these functional hybrid systems, with tunable dye absorption, fast and efficient EET, and the ability to remove all metallic SWCNTs by subsequent separation, demonstrates potential for implementation in photoconversion devices.
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- 2018
4. Low-Temperature Single Carbon Nanotube Spectroscopy of sp3 Quantum Defects
- Author
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Yue Luo, Kamran Shayan, Xiaowei He, Rachelle Ihly, Xuedan Ma, Stefan Strauf, Brendan J. Gifford, Sergei Tretiak, Han Htoon, Jeffrey L. Blackburn, Svetlana Kilina, Nicolai F. Hartmann, and Stephen K. Doorn
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Nanotube ,Materials science ,Photoluminescence ,General Engineering ,General Physics and Astronomy ,Nanotechnology ,02 engineering and technology ,Electronic structure ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Molecular physics ,Spectral line ,0104 chemical sciences ,law.invention ,Polyfluorene ,chemistry.chemical_compound ,chemistry ,law ,General Materials Science ,Chemical binding ,0210 nano-technology ,Spectroscopy - Abstract
Aiming to unravel the relationship between chemical configuration and electronic structure of sp3 defects of aryl-functionalized (6,5) single-walled carbon nanotubes (SWCNTs), we perform low-temperature single nanotube photoluminescence (PL) spectroscopy studies and correlate our observations with quantum chemistry simulations. We observe sharp emission peaks from individual defect sites that are spread over an extremely broad, 1000–1350 nm, spectral range. Our simulations allow us to attribute this spectral diversity to the occurrence of six chemically and energetically distinct defect states resulting from topological variation in the chemical binding configuration of the monovalent aryl groups. Both PL emission efficiency and spectral line width of the defect states are strongly influenced by the local dielectric environment. Wrapping the SWCNT with a polyfluorene polymer provides the best isolation from the environment and yields the brightest emission with near-resolution limited spectral line width ...
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- 2017
5. Tunable room-temperature single-photon emission at telecom wavelengths from sp3 defects in carbon nanotubes
- Author
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Nicolai F. Hartmann, Weilu Gao, Xuedan Ma, Takeshi Tanaka, Han Htoon, Younghee Kim, Hiromichi Kataura, Xiaowei He, Yohei Yomogida, Junichiro Kono, Rachelle Ihly, Atsushi Hirano, Jeffrey L. Blackburn, and Stephen K. Doorn
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Nanotube ,Materials science ,business.industry ,C band ,Exciton ,Physics::Optics ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,law.invention ,Optical properties of carbon nanotubes ,Condensed Matter::Materials Science ,Wavelength ,law ,0210 nano-technology ,Telecommunications ,business ,Quantum ,Excitation - Abstract
Generating quantum light emitters that operate at room temperature and at telecom wavelengths remains a significant materials challenge. To achieve this goal requires light sources that emit in the near-infrared wavelength region and that, ideally, are tunable to allow desired output wavelengths to be accessed in a controllable manner. Here, we show that exciton localization at covalently introduced aryl sp3 defect sites in single-walled carbon nanotubes provides a route to room-temperature single-photon emission with ultrahigh single-photon purity (99%) and enhanced emission stability approaching the shot-noise limit. Moreover, we demonstrate that the inherent optical tunability of single-walled carbon nanotubes, present in their structural diversity, allows us to generate room-temperature single-photon emission spanning the entire telecom band. Single-photon emission deep into the centre of the telecom C band (1.55 µm) is achieved at the largest nanotube diameters we explore (0.936 nm). Single-photon emission with 99% purity is generated from sp3 defects in carbon nanotubes (CNTs) by optical excitation at room temperature. By increasing the CNT diameter from 0.76 nm to 0.94 nm, the emission wavelength can be changed from 1,100 nm to 1,600 nm.
- Published
- 2017
6. Large n- and p-type thermoelectric power factors from doped semiconducting single-walled carbon nanotube thin films
- Author
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Rachelle Ihly, Christopher N. Folmar, Christopher S. Fewox, Andrew J. Ferguson, Zbyslaw R. Owczarczyk, Bradley A. MacLeod, Barry L. Zink, Katherine E. Hurst, Katherine Holman Hughes, Devin Wesenberg, Jeffrey L. Blackburn, Isaac E. Gould, and Noah J. Stanton
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Renewable Energy, Sustainability and the Environment ,business.industry ,Doping ,Nanotechnology ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Pollution ,0104 chemical sciences ,law.invention ,Organic semiconductor ,Thermoelectric generator ,Semiconductor ,Nuclear Energy and Engineering ,law ,Seebeck coefficient ,Thermoelectric effect ,Environmental Chemistry ,Thin film ,0210 nano-technology ,business - Abstract
Lightweight, robust, and flexible single-walled carbon nanotube (SWCNT) materials can be processed inexpensively using solution-based techniques, similar to other organic semiconductors. In contrast to many semiconducting polymers, semiconducting SWCNTs (s-SWCNTs) represent unique one-dimensional organic semiconductors with chemical and physical properties that facilitate equivalent transport of electrons and holes. These factors have driven increasing attention to employing s-SWCNTs for electronic and energy harvesting applications, including thermoelectric (TE) generators. Here we demonstrate a combination of ink chemistry, solid-state polymer removal, and charge-transfer doping strategies that enable unprecedented n-type and p-type TE power factors, in the range of 700 μW m−1 K−2 at 298 K for the same solution-processed highly enriched thin films containing 100% s-SWCNTs. We also demonstrate that the thermal conductivity appears to decrease with decreasing s-SWCNT diameter, leading to a peak material zT ≈ 0.12 for s-SWCNTs with diameters in the range of 1.0 nm. Our results indicate that the TE performance of s-SWCNT-only material systems is approaching that of traditional inorganic semiconductors, paving the way for these materials to be used as the primary components for efficient, all-organic TE generators.
- Published
- 2017
7. Photoluminescence Imaging of Polyfluorene Surface Structures on Semiconducting Carbon Nanotubes: Implications for Thin Film Exciton Transport
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Anne-Marie Dowgiallo, Nicolai F. Hartmann, Jeffrey L. Blackburn, Stephen K. Doorn, Rachelle Ihly, and Rajib Pramanik
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Nanotube ,Materials science ,Photoluminescence ,Exciton ,General Physics and Astronomy ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,01 natural sciences ,law.invention ,Polyfluorene ,chemistry.chemical_compound ,law ,Photovoltaics ,General Materials Science ,Thin film ,chemistry.chemical_classification ,business.industry ,General Engineering ,Polymer ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,chemistry ,Optoelectronics ,0210 nano-technology ,business - Abstract
Single-walled carbon nanotubes (SWCNTs) have potential to act as light-harvesting elements in thin film photovoltaic devices, but performance is in part limited by the efficiency of exciton diffusion processes within the films. Factors contributing to exciton transport can include film morphology encompassing nanotube orientation, connectivity, and interaction geometry. Such factors are often defined by nanotube surface structures that are not yet well understood. Here, we present the results of a combined pump-probe and photoluminescence imaging study of polyfluorene (PFO)-wrapped (6,5) and (7,5) SWCNTs that provide additional insight into the role played by polymer structures in defining exciton transport. Pump-probe measurements suggest exciton transport occurs over larger length scales in films composed of PFO-wrapped (7,5) SWCNTs, compared to those prepared from PFO-bpy-wrapped (6,5) SWCNTs. To explore the role the difference in polymer structure may play as a possible origin of differing transport behaviors, we performed a photoluminescence imaging study of individual polymer-wrapped (6,5) and (7,5) SWCNTs. The PFO-bpy-wrapped (6,5) SWCNTs showed more uniform intensity distributions along their lengths, in contrast to the PFO-wrapped (7,5) SWCNTs, which showed irregular, discontinuous intensity distributions. These differences likely originate from differences in surface coverage and suggest the PFO wrapping on (7,5) nanotubes produces a more open surface structure than is available with the PFO-bpy wrapping of (6,5) nanotubes. The open structure likely leads to improved intertube coupling that enhances exciton transport within the (7,5) films, consistent with the results of our pump-probe measurements.
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- 2016
8. Effect of nanotube coupling on exciton transport in polymer-free monochiral semiconducting carbon nanotube networks
- Author
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Justin C. Johnson, Andrew J. Ferguson, Dylan H. Arias, Rachelle Ihly, Stephanie M. Hart, Jeffrey L. Blackburn, Dana B. Sulas-Kern, Ji Hao, and Hyun Suk Kang
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chemistry.chemical_classification ,Nanotube ,Materials science ,Exciton ,02 engineering and technology ,Carbon nanotube ,Polymer ,Trapping ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,Coupling (electronics) ,Condensed Matter::Materials Science ,Delocalized electron ,chemistry ,Chemical physics ,law ,General Materials Science ,Thin film ,0210 nano-technology - Abstract
Semiconducting single-walled carbon nanotubes (s-SWCNTs) are attractive light-harvesting components for solar photoconversion schemes and architectures, and selective polymer extraction has emerged as a powerful route to obtain highly pure s-SWCNT samples for electronic applications. Here we demonstrate a novel method for producing electronically coupled thin films of near-monochiral s-SWCNTs without wrapping polymer. Detailed steady-state and transient optical studies on such samples provide new insights into the role of the wrapping polymer on controlling intra-bundle nanotube–nanotube interactions and exciton energy transfer within and between bundles. Complete removal of polymer from the networks results in rapid exciton trapping within nanotube bundles, limiting long-range exciton transport. The results suggest that intertube electronic coupling and associated exciton delocalization across multiple tubes can limit diffusive exciton transport. The complex relationship observed here between exciton delocalization, trapping, and long-range transport, helps to inform the design, preparation, and implementation of carbon nanotube networks as active elements for optical and electronic applications.
- Published
- 2019
9. Polymer-Free Carbon Nanotube Thermoelectrics with Improved Charge Carrier Transport and Power Factor
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Isaac E. Gould, A. D. Avery, Brenna Norton-Baker, Zbyslaw R. Owczarczyk, Andrew J. Ferguson, Rachelle Ihly, and Jeffrey L. Blackburn
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chemistry.chemical_classification ,Nanotube ,Materials science ,Renewable Energy, Sustainability and the Environment ,Energy Engineering and Power Technology ,Nanotechnology ,02 engineering and technology ,Polymer ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Thermoelectric materials ,01 natural sciences ,0104 chemical sciences ,law.invention ,Fuel Technology ,chemistry ,Chemistry (miscellaneous) ,law ,Seebeck coefficient ,Thermoelectric effect ,Materials Chemistry ,Charge carrier ,Thin film ,0210 nano-technology - Abstract
Semiconducting single-walled carbon nanotubes (s-SWCNTs) have recently attracted attention for their promise as active components in a variety of optical and electronic applications, including thermoelectricity generation. Here we demonstrate that removing the wrapping polymer from the highly enriched s-SWCNT network leads to substantial improvements in charge carrier transport and thermoelectric power factor. These improvements arise primarily from an increase in charge carrier mobility within the s-SWCNT networks because of removal of the insulating polymer and control of the level of nanotube bundling in the network, which enables higher thin-film conductivity for a given carrier density. Ultimately, these studies demonstrate that highly enriched s-SWCNT thin films, in the complete absence of any accompanying semiconducting polymer, can attain thermoelectric power factors in the range of ∼400 μW m–1 K–2, which is on par with that of some of the best single-component organic thermoelectrics demonstrated...
- Published
- 2016
10. Efficiency of Charge-Transfer Doping in Organic Semiconductors Probed with Quantitative Microwave and Direct-Current Conductance
- Author
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Rachelle Ihly, Obadiah G. Reid, Andrew J. Ferguson, Sanjini U. Nanayakkara, and Jeffrey L. Blackburn
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education.field_of_study ,Materials science ,Dopant ,Population ,Doping ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Organic semiconductor ,Condensed Matter::Materials Science ,Delocalized electron ,Chemical physics ,Electrical resistivity and conductivity ,General Materials Science ,Charge carrier ,Electric potential ,Physical and Theoretical Chemistry ,0210 nano-technology ,education - Abstract
Although molecular charge-transfer doping is widely used to manipulate carrier density in organic semiconductors, only a small fraction of charge carriers typically escape the Coulomb potential of dopant counterions to contribute to electrical conductivity. Here, we utilize microwave and direct-current (DC) measurements of electrical conductivity to demonstrate that a high percentage of charge carriers in redox-doped semiconducting single-walled carbon nanotube (s-SWCNT) networks is delocalized as a free carrier density in the π-electron system (estimated as46% at high doping densities). The microwave and four-point probe conductivities of hole-doped s-SWCNT films quantitatively match over almost 4 orders of magnitude in conductance, indicating that both measurements are dominated by the same population of delocalized carriers. We address the relevance of this surprising one-to-one correspondence by discussing the degree to which local environmental parameters (e.g., tube-tube junctions, Coulombic stabilization, and local bonding environment) may impact the relative magnitudes of each transport measurement.
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- 2018
11. Switchable photovoltaic windows enabled by reversible photothermal complex dissociation from methylammonium lead iodide
- Author
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David T. Moore, Noah J. Stanton, Lance M. Wheeler, Elisa M. Miller, Nathan R. Neale, Rachelle Ihly, Jeffrey L. Blackburn, and Robert C. Tenent
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Materials science ,Science ,General Physics and Astronomy ,Halide ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,General Biochemistry, Genetics and Molecular Biology ,Dissociation (chemistry) ,Transmittance ,Energy transformation ,lcsh:Science ,Multidisciplinary ,business.industry ,Photovoltaic system ,General Chemistry ,Energy consumption ,Photothermal therapy ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Optoelectronics ,lcsh:Q ,0210 nano-technology ,business ,Visible spectrum - Abstract
Materials with switchable absorption properties have been widely used for smart window applications to reduce energy consumption and enhance occupant comfort in buildings. In this work, we combine the benefits of smart windows with energy conversion by producing a photovoltaic device with a switchable absorber layer that dynamically responds to sunlight. Upon illumination, photothermal heating switches the absorber layer—composed of a metal halide perovskite-methylamine complex—from a transparent state (68% visible transmittance) to an absorbing, photovoltaic colored state (less than 3% visible transmittance) due to dissociation of methylamine. After cooling, the methylamine complex is re-formed, returning the absorber layer to the transparent state in which the device acts as a window to visible light. The thermodynamics of switching and performance of the device are described. This work validates a photovoltaic window technology that circumvents the fundamental tradeoff between efficient solar conversion and high visible light transmittance that limits conventional semitransparent PV window designs., Conventional smart windows with tunable transparency are based on electrochromic systems that consumes energy. Here Wheeler et al. demonstrate a halide perovskite based photo-switchable window that dynamically responds to sunlight and change colors via reversible phase transitions.
- Published
- 2017
12. PbSe Quantum Dot Field-Effect Transistors with Air-Stable Electron Mobilities above 7 cm2 V–1 s–1
- Author
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John C. Hemminger, Markelle Gibbs, Yao Liu, Matt Law, Craig L. Perkins, Nathan Crawford, Yu Liu, Jason Tolentino, and Rachelle Ihly
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Materials science ,Transistors, Electronic ,Passivation ,Bioengineering ,Electron ,chemistry.chemical_compound ,Atomic layer deposition ,Quantum Dots ,General Materials Science ,Particle Size ,Selenium Compounds ,Lead selenide ,Surface states ,business.industry ,Air ,Mechanical Engineering ,Equipment Design ,General Chemistry ,Condensed Matter Physics ,Amorphous solid ,Lead ,chemistry ,Quantum dot ,Optoelectronics ,Field-effect transistor ,business - Abstract
PbSe quantum dot (QD) field effect transistors (FETs) with air-stable electron mobilities above 7 cm(2) V(-1) s(-1) are made by infilling sulfide-capped QD films with amorphous alumina using low-temperature atomic layer deposition (ALD). This high mobility is achieved by combining strong electronic coupling (from the ultrasmall sulfide ligands) with passivation of surface states by the ALD coating. A series of control experiments rule out alternative explanations. Partial infilling tunes the electrical characteristics of the FETs.
- Published
- 2013
13. Tailored semiconducting carbon nanotube networks with enhanced thermoelectric properties
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Ben H. Zhou, Kevin S. Mistry, Elisa M. Miller, Rachelle Ihly, Barry L. Zink, Jeffrey L. Blackburn, Devin Wesenberg, A. D. Avery, Jounghee Lee, Sarah Lucienne Guillot, Yong-Hyun Kim, Eui Sup Lee, and Andrew J. Ferguson
- Subjects
Materials science ,Renewable Energy, Sustainability and the Environment ,business.industry ,Energy Engineering and Power Technology ,Nanotechnology ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Solar energy ,Thermoelectric materials ,01 natural sciences ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,law.invention ,Fuel Technology ,Thermal conductivity ,law ,Thermoelectric effect ,Thin film ,0210 nano-technology ,business ,Electronic materials - Abstract
Organic thermoelectric materials are emerging as low-cost, versatile alternatives to more established inorganic ones. Avery et al. report carbon nanotube-based materials with selected properties that exhibit enhanced thermoelectric performance.
- Published
- 2016
14. Isolation of1 nm Diameter Single-Wall Carbon Nanotube Species Using Aqueous Two-Phase Extraction
- Author
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Erik H. Haroz, Stephen K. Doorn, Stephanie Lam, Angela R. Hight Walker, Ming Zheng, Jeffrey A. Fagan, Hui Gui, Jeffrey R. Simpson, Rachelle Ihly, and Jeffrey L. Blackburn
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Range (particle radiation) ,Aqueous solution ,Materials science ,Extraction (chemistry) ,General Engineering ,General Physics and Astronomy ,Carbon nanotube ,law.invention ,Metal ,Electric arc ,Chemical engineering ,Pulmonary surfactant ,law ,Phase (matter) ,visual_art ,visual_art.visual_art_medium ,General Materials Science ,Composite material - Abstract
In this contribution we demonstrate the effective separation of single-wall carbon nanotube (SWCNT) species with diameters larger than 1 nm through multistage aqueous two-phase extraction (ATPE), including isolation at the near-monochiral species level up to at least the diameter range of SWCNTs synthesized by electric arc synthesis (1.3-1.6 nm). We also demonstrate that refined species are readily obtained from both the metallic and semiconducting subpopulations of SWCNTs and that this methodology is effective for multiple SWCNT raw materials. Using these data, we report an empirical function for the necessary surfactant concentrations in the ATPE method for separating different SWCNTs into either the lower or upper phase as a function of SWCNT diameter. This empirical correlation enables predictive separation design and identifies a subset of SWCNTs that behave unusually as compared to other species. These results not only dramatically increase the range of SWCNT diameters to which species selective separation can be achieved but also demonstrate that aqueous two-phase separations can be designed across experimentally accessible ranges of surfactant concentrations to controllably separate SWCNT populations of very small (∼0.62 nm) to very large diameters (1.7 nm). Together, the results reported here indicate that total separation of all SWCNT species is likely feasible by the ATPE method, especially given future development of multistage automated extraction techniques.
- Published
- 2015
15. Probing the complete folding trajectory of a DNA hairpin using dual beam fluorescence fluctuation spectroscopy
- Author
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Jaemyeong Jung, Rachelle Ihly, Alan Van Orden, Eric Scott, and Ming Yu
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Kinetics ,Time constant ,DNA ,Fluorescence ,Surfaces, Coatings and Films ,Folding (chemistry) ,chemistry.chemical_compound ,Crystallography ,Spectrometry, Fluorescence ,chemistry ,Chemical physics ,Metastability ,Materials Chemistry ,Nucleic Acid Conformation ,Transition Temperature ,A-DNA ,Physical and Theoretical Chemistry ,Spectroscopy - Abstract
The conformational fluctuations of dye-quencher labeled DNA hairpin molecules in aqueous solution were investigated using dual probe beam fluorescence fluctuation spectroscopy. The measurements revealed the flow and diffusion times of the DNA molecules through two spatially offset optical probe regions, the absolute and relative concentrations of each conformational substate of the DNA, and the kinetics of the DNA hairpin folding and unfolding reactions in the 1 micros to 10 ms time range. A DNA hairpin containing a 21-nucleotide polythymine loop and a 4-base pair stem exhibited double exponential relaxation kinetics, with time constants of 84 and 393 micros. This confirms that folding and melting of the DNA hairpin structure is not a two state process but proceeds by way of metastable intermediate states. The fast time constant corresponds to formation and unfolding of an intermediate, and the slow time constant is due to formation and disruption of the fully base-paired stem. This is consistent with a previous study of a similar DNA hairpin with a 5-base pair stem, in which the fast reaction was attributed to the fluctuations of an intermediate DNA conformation [J. Am. Chem. Soc. 2006, 128, 1240-1249]. In that case, reactions involving the native conformation could not be observed directly due to the limited observation time range of the fluorescence correlation spectroscopy experiment. The intermediate states of the DNA hairpins are suggested to be due to a collapsed ensemble of folded hairpins containing various partially folded or misfolded conformations.
- Published
- 2007
16. Probing the Complete Folding Trajectory of a DNA Hairpin Using Dual Beam Fluorescence Fluctuation Spectroscopy.
- Author
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Jaemyeong Jung, Rachelle Ihly, Eric Scott, Ming Yu, and Alan Van Orden
- Subjects
- *
NUCLEIC acids , *GENES , *DNA , *MOLECULAR genetics - Abstract
The conformational fluctuations of dye-quencher labeled DNA hairpin molecules in aqueous solution were investigated using dual probe beam fluorescence fluctuation spectroscopy. The measurements revealed the flow and diffusion times of the DNA molecules through two spatially offset optical probe regions, the absolute and relative concentrations of each conformational substate of the DNA, and the kinetics of the DNA hairpin folding and unfolding reactions in the 1 s to 10 ms time range. A DNA hairpin containing a 21-nucleotide polythymine loop and a 4-base pair stem exhibited double exponential relaxation kinetics, with time constants of 84 and 393 s. This confirms that folding and melting of the DNA hairpin structure is not a two state process but proceeds by way of metastable intermediate states. The fast time constant corresponds to formation and unfolding of an intermediate, and the slow time constant is due to formation and disruption of the fully base-paired stem. This is consistent with a previous study of a similar DNA hairpin with a 5-base pair stem, in which the fast reaction was attributed to the fluctuations of an intermediate DNA conformation J. Am. Chem. Soc.2006,128, 1240−1249. In that case, reactions involving the native conformation could not be observed directly due to the limited observation time range of the fluorescence correlation spectroscopy experiment. The intermediate states of the DNA hairpins are suggested to be due to a collapsed ensemble of folded hairpins containing various partially folded or misfolded conformations. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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