1. Somatic loss of function mutations in neurofibromin 1 and MYC associated factor X genes identified by exome-wide sequencing in a wild-type GIST case
- Author
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Belinsky, Martin G, Rink, Lori, Cai, Kathy Q, Capuzzi, Stephen J, Hoang, Yen, Chien, Jeremy, Godwin, Andrew K, and von Mehren, Margaret
- Subjects
Human Genome ,Genetics ,Neurosciences ,Neurofibromatosis ,Cancer ,Digestive Diseases ,Rare Diseases ,2.1 Biological and endogenous factors ,Aetiology ,Adult ,Aged ,Aged ,80 and over ,Basic-Leucine Zipper Transcription Factors ,Exome ,Female ,Frameshift Mutation ,Gastrointestinal Stromal Tumors ,Gene Expression Regulation ,Neoplastic ,High-Throughput Nucleotide Sequencing ,Humans ,Male ,Middle Aged ,Neurofibromin 1 ,Proto-Oncogene Proteins c-kit ,Receptor ,Platelet-Derived Growth Factor alpha ,Succinate Dehydrogenase ,Gastrointestinal stromal tumor ,Wild type ,KIT ,PDGFRA ,Succinate dehydrogenase ,NF1 ,MAX ,Oncology and Carcinogenesis ,Public Health and Health Services ,Oncology & Carcinogenesis - Abstract
BackgroundApproximately 10-15 % of gastrointestinal stromal tumors (GISTs) lack gain of function mutations in the KIT and platelet-derived growth factor receptor alpha (PDGFRA) genes. An alternate mechanism of oncogenesis through loss of function of the succinate-dehydrogenase (SDH) enzyme complex has been identified for a subset of these "wild type" GISTs.MethodsPaired tumor and normal DNA from an SDH-intact wild-type GIST case was subjected to whole exome sequencing to identify the pathogenic mechanism(s) in this tumor. Selected findings were further investigated in panels of GIST tumors through Sanger DNA sequencing, quantitative real-time PCR, and immunohistochemical approaches.ResultsA hemizygous frameshift mutation (p.His2261Leufs*4), in the neurofibromin 1 (NF1) gene was identified in the patient's GIST; however, no germline NF1 mutation was found. A somatic frameshift mutation (p.Lys54Argfs*31) in the MYC associated factor X (MAX) gene was also identified. Immunohistochemical analysis for MAX on a large panel of GISTs identified loss of MAX expression in the MAX-mutated GIST and in a subset of mainly KIT-mutated tumors.ConclusionThis study suggests that inactivating NF1 mutations outside the context of neurofibromatosis may be the oncogenic mechanism for a subset of sporadic GIST. In addition, loss of function mutation of the MAX gene was identified for the first time in GIST, and a broader role for MAX in GIST progression was suggested.
- Published
- 2015