18 results on '"Weber, C K"'
Search Results
2. Comment on: Antibodies to the endoplasmic reticulum-resident chaperones calnexin, BiP and Grp94 in patients with rheumatoid arthritis and systemic lupus erythematosus: reply
- Author
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Weber, C. K., primary, Mielenz, D., additional, Voll, R. E., additional, and Furnrohr, B. G., additional
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- 2010
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3. Antibodies to the endoplasmic reticulum-resident chaperones calnexin, BiP and Grp94 in patients with rheumatoid arthritis and systemic lupus erythematosus
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Weber, C. K., primary, Haslbeck, M., additional, Englbrecht, M., additional, Sehnert, B., additional, Mielenz, D., additional, Graef, D., additional, Distler, J. H., additional, Mueller, R. B., additional, Burkhardt, H., additional, Schett, G., additional, Voll, R. E., additional, and Furnrohr, B. G., additional
- Published
- 2010
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4. IgG autoantibodies bound to surfaces of necrotic cells and complement C4 comprise the phagocytosis promoting activity for necrotic cells of systemic lupus erythaematosus sera
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Grossmayer, G E, primary, Munoz, L E, additional, Weber, C K, additional, Franz, S, additional, Voll, R E, additional, Kern, P M, additional, Kalden, J R, additional, Schett, G, additional, Herrmann, M, additional, and Gaipl, U S, additional
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- 2007
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5. Cellular immune reaction in the pancreas is induced by constitutively active I B kinase-2
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Aleksic, T., primary, Baumann, B., additional, Wagner, M., additional, Adler, G., additional, Wirth, T., additional, and Weber, C. K, additional
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- 2007
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6. A murine tumor progression model for pancreatic cancer recapitulating the genetic alterations of the human disease.
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Wagner, M, Greten, F R, Weber, C K, Koschnick, S, Mattfeldt, T, Deppert, W, Kern, H, Adler, G, and Schmid, R M
- Abstract
This study describes a tumor progression model for ductal pancreatic cancer in mice overexpressing TGF-alpha. Activation of Ras and Erk causes induction of cyclin D1-Cdk4 without increase of cyclin E or PCNA in ductal lesions. Thus, TGF-alpha is able to promote progression throughout G1, but not S phase. Crossbreeding with p53 null mice accelerates tumor development in TGF-alpha transgenic mice dramatically. In tumors developing in these mice, biallelic deletion of Ink4a/Arf or LOH of the Smad4 locus is found suggesting that loci in addition to p53 are involved in antitumor activities. We conclude that these genetic events are critical for pancreatic tumor formation in mice. This model recapitulates pathomorphological features and genetic alterations of the human disease.
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- 2001
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7. The GABP-responsive element of the interleukin-2 enhancer is regulated by JNK/SAPK-activating pathways in T lymphocytes.
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Hoffmeyer, A, Avots, A, Flory, E, Weber, C K, Serfling, E, and Rapp, U R
- Abstract
T cell activation leads via multiple intracellular signaling pathways to rapid induction of interleukin-2 (IL-2) expression, which can be mimicked by costimulation with 12-O-tetradecanoylphorbol-13-acetate (TPA) and ionomycin. We have identified a distal IL-2 enhancer regulated by the Raf-MEK-ERK signaling pathway, which can be induced by TPA/ionomycin treatment. It contains a dyad symmetry element (DSE) controlled by the Ets-like transcription factor GA-binding protein (GABP), a target of activated ERK. TPA/ionomycin treatment of T cells stimulates both mitogen-activated ERK, as well as the stress-activated mitogen-activated protein kinase family members JNK/SAPK and p38. In this study, we investigated the contribution of the stress-activated pathways to the induction of the distal IL-2 enhancer. We show that JNK- but not p38-activating pathways regulate the DSE activity. Furthermore, the JNK/SAPK signaling pathway cooperates with the Raf-MEK-ERK cascade in TPA/ionomycin-induced DSE activity. In T cells, overexpression of SPRK/MLK3, an activator of JNK/SAPK, strongly induces DSE-dependent transcription and dominant negative kinases of SEK and SAPK impair TPA/ionomycin-induced DSE activity. Blocking both ERK and JNK/SAPK pathways abolishes the DSE induction. The inducibility of the DSE is strongly dependent on the Ets-core motifs, which are bound by GABP. Both subunits of GABP are phosphorylated upon JNK activation in vivo and three different isoforms of JNK/SAPK, but not p38, in vitro. Our data suggest that GABP is targeted by signaling events from both ERK and JNK/SAPK pathways. GABP therefore is a candidate for signal integration and regulation of IL-2 transcription in T lymphocytes.
- Published
- 1998
8. Activity of Rap1 is regulated by bombesin, cell adhesion, and cell density in NIH3T3 fibroblasts.
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Posern, G, Weber, C K, Rapp, U R, and Feller, S M
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Rap1 and Ras are homologous GTPases that are implicated in cell proliferation and differentiation. At present, little is known about the regulation of Rap1 activity. Using a recently developed assay with activation-specific probes, we found increased activity of endogenous Rap1 in NIH3T3 cells after stimulation with the neuropeptide growth factor bombesin in a concentration- and time-dependent manner. The activity of endogenous Ras was unaffected. Analysis of putative effectors showed no activation of c-Raf-1 or B-Raf after bombesin stimulation. However, MAPK/Erk-phosphorylation and the proliferation rate was increased. In addition, Rap1 was activated during cell adhesion to coated and uncoated tissue culture plates, as well as in response to various mitogens. Surprisingly, the basal Rap1 activity was observed to be cell density-dependent, with low levels when cells were reaching confluency. The results suggest that Rap1 acts as an important mediator of mitogenic signals distinct to Ras activation.
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- 1998
9. Biglycan is overexpressed in pancreatic cancer and induces G1-arrest in pancreatic cancer cell lines.
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Weber CK, Sommer G, Michl P, Fensterer H, Weimer M, Gansauge F, Leder G, Adler G, and Gress TM
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- Adult, Aged, Animals, Biglycan, Cell Cycle Proteins analysis, Cell Cycle Proteins metabolism, Cyclin A metabolism, Cyclin-Dependent Kinase Inhibitor p27, Extracellular Matrix Proteins, Female, G2 Phase physiology, Gene Expression Regulation, Neoplastic drug effects, Humans, Male, Mice, Mice, Nude, Middle Aged, Neoplasm Transplantation, Phosphorylation, Proliferating Cell Nuclear Antigen metabolism, Proteoglycans analysis, Proto-Oncogene Proteins p21(ras) analysis, Proto-Oncogene Proteins p21(ras) metabolism, RNA, Messenger analysis, Retinoblastoma Protein analysis, Retinoblastoma Protein metabolism, S Phase physiology, Stromal Cells chemistry, Stromal Cells physiology, Transforming Growth Factor beta pharmacology, Transplantation, Heterologous, Tumor Cells, Cultured chemistry, Tumor Cells, Cultured cytology, Tumor Cells, Cultured metabolism, G1 Phase physiology, Gene Expression Regulation, Neoplastic physiology, Pancreatic Neoplasms, Proteoglycans genetics, Tumor Suppressor Proteins
- Abstract
Background & Aims: Biglycan (PG-I), a component of the extracellular matrix (ECM), is overexpressed in pancreatic cancer. To determine possible matrix-tumor interactions, we investigated the effects of PG-I on pancreatic cancer., Methods: PG-I expression in cell lines and tissue samples was examined by Northern blot and immunofluorescence. The effect of PG-I on proliferation was determined by measuring activity of Ras, ERK, Rb, [(3)H]-thymidine incorporation, and cell cycle analysis. Expression of cyclin A, B1, D1, E1, G1, PCNA, p21, and p27 was analyzed by Northern and Western blots., Results: PG-I was overexpressed in the ECM of pancreatic cancer samples compared with normal pancreas or chronic pancreatitis tissues. Addition of transforming growth factor (TGF)-beta induced PG-I expression in HFL and HFFF2 fibroblasts as well as in the pancreatic cancer cell line PANC-1. PG-I inhibited growth of both TGF-beta-responsive and TGF-beta-unresponsive pancreatic cancer cells by inducing G1-arrest, which is accompanied by an increase of p27 and reduction of cyclin A and proliferating cell nuclear antigen. Furthermore, endogenous Ras and ERK activation was partly reduced by PG-I in vitro., Conclusions: The ECM protein PG-I inhibits growth by arresting pancreatic cancer cells in G1 and may be part of a host defense mechanism aimed at slowing down pancreatic tumor progression.
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- 2001
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10. Active Ras induces heterodimerization of cRaf and BRaf.
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Weber CK, Slupsky JR, Kalmes HA, and Rapp UR
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- 14-3-3 Proteins, Binding Sites, Catalytic Domain, Cell Line, Dimerization, Humans, Peptide Fragments metabolism, Protein Isoforms, Tyrosine 3-Monooxygenase metabolism, Proto-Oncogene Proteins c-raf metabolism, ras Proteins physiology
- Abstract
Growth factor-induced signalling leads to activation of members of the Ras family and subsequent stimulation of different Raf isoforms. Within the mechanism of Raf activation, two isoforms of Raf, cRaf and BRaf, may cooperate. We investigated the relationship between cRaf and BRaf and found that active Ras induced heterodimerization of cRaf and BRaf, an effect that was dependent on the serine residue at position 621 of cRAF: Moreover, we also found that cRaf COOH-terminus constitutively associated with BRaf, whereas the NH(2) terminus did not, even in the presence of active RAS: These data suggest that Ras induces the cRaf-BRaf complex formation through the exposure of 14-3-3 binding sites in the COOH-terminus of cRAF: Thus, Ras-induced cRaf-Braf heterodimerization may explain the observed cooperativity of cRaf and BRaf in cells responding to growth factor signals.
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- 2001
11. Suppression of NF-kappaB activity by sulfasalazine is mediated by direct inhibition of IkappaB kinases alpha and beta.
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Weber CK, Liptay S, Wirth T, Adler G, and Schmid RM
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- Adenosine Triphosphate pharmacology, Cell Line, Drug Combinations, Humans, Hydrogen-Ion Concentration, I-kappa B Kinase, I-kappa B Proteins metabolism, Jurkat Cells, Phosphorylation drug effects, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases pharmacology, Transcription, Genetic drug effects, Tumor Necrosis Factor-alpha pharmacology, NF-kappaB-Inducing Kinase, Enzyme Inhibitors pharmacology, Gastrointestinal Agents pharmacology, NF-kappa B antagonists & inhibitors, Sulfasalazine pharmacology
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Background & Aims: Activation of NF-kappaB/Rel has been implicated in the pathogenesis of inflammatory bowel disease (IBD). Various drugs used in the treatment of IBD, such as glucocorticoids, 5-aminosalicylic acid, and sulfasalazine, interfere with NF-kappaB/Rel signaling. The aim of this study was to define the molecular mechanism by which sulfasalazine inhibits NF-kappaB activation., Methods: The effects of sulfasalazine and its moieties on NF-kappaB signaling were evaluated using electromobility shift, transfection, and immune complex kinase assays. The direct effect of sulfasalazine on IkappaB kinase (IKK) activity was investigated using purified recombinant IKK-alpha and -beta proteins., Results: NF-kappaB/Rel activity induced by tumor necrosis factor alpha, 12-O-tetradecanoylphorbol-13-acetate, or overexpression of NF-kappaB-inducing kinase, IKK-alpha, IKK-beta, or constitutively active IKK-alpha and IKK-beta mutants was inhibited dose dependently by sulfasalazine. Sulfasalazine inhibited tumor necrosis factor alpha-induced activation of endogenous IKK in Jurkat T cells and SW620 colon cells, as well as the catalytic activity of purified IKK-alpha and IKK-beta in vitro. In contrast, the moieties of sulfasalazine, 5-aminosalicylic acid, and sulfapyridine or 4-aminosalicylic acid had no effect. Activation of extracellular signal-related kinase (ERK) 1 and 2, c-Jun-N-terminal kinase (JNK) 1, and p38 was unaffected by sulfasalazine. The decrease in substrate phosphorylation by IKK-alpha and -beta is associated with a decrease in autophosphorylation of IKKs and can be antagonized by excess adenosine triphosphate., Conclusions: These data identify sulfasalazine as a direct inhibitor of IKK-alpha and -beta by antagonizing adenosine triphosphate binding. The suppression of NF-kappaB activation by inhibition of the IKKs contributes to the well-known anti-inflammatory and immunosuppressive effects of sulfasalazine.
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- 2000
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12. Raf induces NF-kappaB by membrane shuttle kinase MEKK1, a signaling pathway critical for transformation.
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Baumann B, Weber CK, Troppmair J, Whiteside S, Israel A, Rapp UR, and Wirth T
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- Animals, Cell Line, Genes, Reporter, I-kappa B Kinase, Recombinant Fusion Proteins metabolism, Recombinant Proteins metabolism, Spodoptera, Tetradecanoylphorbol Acetate pharmacology, Transfection, NF-kappa B metabolism, Protein Serine-Threonine Kinases metabolism, Proto-Oncogene Proteins c-raf metabolism, Signal Transduction
- Abstract
NF-kappaB is regulated by inhibitor proteins (IkappaBs), which retain NF-kappaB in the cytoplasm. Signal-induced phosphorylation by the IkappaB-kinase complex containing the IkappaB-kinases 1 and 2 (IKK-1/2 or IKK-alpha/beta) and subsequent degradation of the IkappaB proteins are prerequisites for NF-kappaB activation. Many signals induce NF-kappaB, one of them being oncogenic Raf kinase. We investigated whether NF-kappaB induction is critical for Raf-mediated transformation. Here, we demonstrate that inhibition of NF-kappaB interferes with transformation by the Raf-oncogene, and we characterized the mechanism of NF-kappaB induction by activated Raf kinase and the tumor promoter phorbol 12-myristate 13-acetate (PMA). NF-kappaB activation by PMA and Raf critically depends on the IkappaB-kinase complex, most notably on IKK-2. A major signaling pathway induced by Raf is the mitogenic cytoplasmic kinase cascade. However, different inhibitors of this cascade do not affect PMA- and Raf-mediated NF-kappaB activation. Raf does not phosphorylate the IkappaB-kinase proteins directly. Raf rather synergizes with another membrane shuttle kinase MEKK1, and Raf-mediated activation of NF-kappaB is blocked by a dominant negative form of MEKK1. These results suggest that Raf induction of NF-kappaB is relayed by MEKK1, but not by the classical mitogenic cytoplasmic kinase cascade.
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- 2000
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13. Mitogenic signaling of Ras is regulated by differential interaction with Raf isozymes.
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Weber CK, Slupsky JR, Herrmann C, Schuler M, Rapp UR, and Block C
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- Amino Acid Sequence, Animals, Cell Line, Enzyme Activation genetics, Humans, Isoenzymes genetics, Isoenzymes metabolism, Isoenzymes physiology, Molecular Sequence Data, Protein Binding genetics, Proto-Oncogene Proteins c-raf genetics, Proto-Oncogene Proteins c-raf metabolism, Proto-Oncogene Proteins p21(ras) metabolism, Rabbits, Substrate Specificity genetics, Transfection, MAP Kinase Signaling System physiology, Mitogens physiology, Proto-Oncogene Proteins c-raf physiology, Proto-Oncogene Proteins p21(ras) physiology
- Abstract
In the mitogenic signaling cascade interaction of Ras with Raf represents a critical step for the regulation of cell growth and differentiation. The major effector of Ras, the serine/threonine kinase Raf exists as three isoforms with different tissue distributions. We demonstrate that transient transfection of oncogenic Ha-Ras leads to a preferential activation of endogenous c-Raf-1 in HEK 293 cells as opposed to A-Raf. In vitro binding studies using purified Ras binding domains of Raf as well as in vivo bindings tests with full length molecules reveals significantly lower binding affinities of A-Raf to Ha-Ras as compared to other Raf isoforms. The Ras-binding interface of c-Raf differs from A-Raf by a conservative Arg to Lys exchange at residue 59 or 22 respectively. Mutational analysis reveals that this residue represents a point of isozyme discrimination: c-Raf-R59K binds Ha-Ras weaker than the wildtype, likewise A-Raf-K22R increases its affinity to Ha-Ras in vivo and in vitro. Differential binding affinities are reflected in downstream signaling. Immunecomplex kinase assays reveal that Ha-Ras mediated Raf activation is decreased for c-Raf-R59K and increased for A-Raf-K22R when compared to the respective wildtype forms. Thus our observations introduce a new level of isoform discrimination in Ras/Raf signaling as a functional consequence of a conservative amino acid exchange in the Ras binding domains.
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- 2000
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14. Binding of Gbetagamma subunits to cRaf1 downregulates G-protein-coupled receptor signalling.
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Slupsky JR, Quitterer U, Weber CK, Gierschik P, Lohse MJ, and Rapp UR
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- Animals, COS Cells, Cell Line, Chlorocebus aethiops, Humans, Kidney, Protein Binding, Proto-Oncogene Proteins p21(ras) physiology, Receptor, Bradykinin B2, Receptors, Bradykinin genetics, Receptors, Bradykinin physiology, Recombinant Fusion Proteins physiology, Transfection, Heterotrimeric GTP-Binding Proteins metabolism, MAP Kinase Signaling System physiology, Proto-Oncogene Proteins c-raf metabolism
- Abstract
Receptors of the seven transmembrane domain family are coupled to heterotrimeric G proteins [1]. Binding of ligand to these receptors induces dissociation of the heterotrimeric complex into free GTP-Galpha and Gbetagamma subunits, which then interact with their respective effector molecules to stimulate specific cellular responses. In some cases, these cellular responses involve mitogenic signalling [2]. The mitogen-activated protein (MAP) kinase cascade is initiated by the protein kinase cRaf1 and links growth factor receptor signalling to cell growth and differentiation [3]. The main activator of cRaf1 is the small GTP-binding protein Ras [4], and the binding of cRaf1 to GTP-Ras translocates cRaf1 to the plasma membrane, where it is activated [5]. It has been reported that cRaf1 associates directly with the beta subunit of heterotrimeric G proteins in vitro, and with the betagamma subunit complex in vivo [6], but the role of this association is not yet understood. Here, we show that cRaf1 associates with Gbeta1gamma2, and that this association in mammalian cells is significantly enhanced when active p21(Ras) is present or when cRaf1 is otherwise targeted to the membrane. Association with Gbeta1gamma2 has no effect on the kinase activity of cRaf1, but cRaf1 can affect Gbetagamma-mediated signalling events. Thus, membrane-localised cRaf1 inhibits G-protein-coupled receptor (GPCR)-stimulated activation of phospholipase Cbeta (PLCbeta) by sequestration of Gbetagamma subunits, an effect also observed with endogenous levels of cRaf1. Our data suggest that cRaf1 may be an important regulator of signalling by Gbetagamma, particularly in those GPCR systems that stimulate the MAP kinase cascade through the activation of p21(Ras).
- Published
- 1999
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15. The RafC1 cysteine-rich domain contains multiple distinct regulatory epitopes which control Ras-dependent Raf activation.
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Daub M, Jöckel J, Quack T, Weber CK, Schmitz F, Rapp UR, Wittinghofer A, and Block C
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- Amino Acid Sequence, Animals, Binding Sites physiology, Cell Line, Enzyme Activation genetics, Epitopes genetics, Gene Expression Regulation genetics, Genes, Reporter genetics, Lipid Metabolism, Models, Molecular, Molecular Sequence Data, Mutagenesis genetics, Protein Binding physiology, Protein Kinase C chemistry, Rabbits, Signal Transduction physiology, Transcriptional Activation physiology, Cysteine chemistry, Proto-Oncogene Proteins c-raf chemistry, ras Proteins physiology
- Abstract
Activation of c-Raf-1 (referred to as Raf) by Ras is a pivotal step in mitogenic signaling. Raf activation is initiated by binding of Ras to the regulatory N terminus of Raf. While Ras binding to residues 51 to 131 is well understood, the role of the RafC1 cysteine-rich domain comprising residues 139 to 184 has remained elusive. To resolve the function of the RafC1 domain, we have performed an exhaustive surface scanning mutagenesis. In our study, we defined a high-resolution map of multiple distinct functional epitopes within RafC1 that are required for both negative control of the kinase and the positive function of the protein. Activating mutations in three different epitopes enhanced Ras-dependent Raf activation, while only some of these mutations markedly increased Raf basal activity. One contiguous inhibitory epitope consisting of S177, T182, and M183 clearly contributed to Ras-Raf binding energy and represents the putative Ras binding site of the RafC1 domain. The effects of all RafC1 mutations on Ras binding and Raf activation were independent of Ras lipid modification. The inhibitory mutation L160A is localized to a position analogous to the phorbol ester binding site in the protein kinase C C1 domain, suggesting a function in cofactor binding. Complete inhibition of Ras-dependent Raf activation was achieved by combining mutations K144A and L160A, which clearly demonstrates an absolute requirement for correct RafC1 function in Ras-dependent Raf activation.
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- 1998
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16. Interaction between the protein kinase B-Raf and the alpha-subunit of the 11S proteasome regulator.
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Kalmes A, Hagemann C, Weber CK, Wixler L, Schuster T, and Rapp UR
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- Animals, Binding Sites, Cell Cycle Proteins, PC12 Cells, Phosphorylation, Rats, Yeasts, Proteins metabolism, Proto-Oncogene Proteins c-raf metabolism
- Abstract
Protein kinases of the Raf family act as signal-transducing elements downstream of activated cell surface receptors and are involved in the regulation of proliferation, differentiation, and cell survival. Whereas the role of c-Raf-1 as a mitogen-activated protein/extracellular signal-regulated kinase activator within the mitogenic cascade is well established, less is known about the mammalian Raf isoforms A-Raf and B-Raf. Here we report that B-Raf binds to PA28alpha, one of two subunits of the 11S regulator of proteasomes. PA28alpha was isolated as a B-Raf-binding protein in a yeast two-hybrid screen of a PC12 cDNA library. Both proteins can be coimmunoprecipitated after transient expression in 293 cells. No association could be found between PA28alpha and A-Raf or c-Raf-1. B-Raf binds to a region in PA28alpha that is important for its proteasome-activating function.
- Published
- 1998
17. Plasma membrane-targeted Raf kinase activates NF-kappaB and human immunodeficiency virus type 1 replication in T lymphocytes.
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Flory E, Weber CK, Chen P, Hoffmeyer A, Jassoy C, and Rapp UR
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- Calcium-Calmodulin-Dependent Protein Kinases metabolism, Cell Membrane metabolism, Enzyme Activation, Humans, Mitogen-Activated Protein Kinase 1, Mitogen-Activated Protein Kinase 3, Phosphorylation, Promoter Regions, Genetic, Protein Serine-Threonine Kinases metabolism, Proto-Oncogene Proteins c-raf genetics, T-Lymphocytes metabolism, Transcriptional Activation, Virus Replication, HIV-1 physiology, MAP Kinase Kinase Kinase 1, Mitogen-Activated Protein Kinases, NF-kappa B metabolism, Proto-Oncogene Proteins c-raf metabolism, T-Lymphocytes virology
- Abstract
Increasing evidence points to a role of the mitogenic Ras/Raf/MEK/ERK signaling cascade in regulation of human immunodeficiency virus type 1 (HIV-1) gene expression. Stimulation of elements of this pathway leads to transactivation of the HIV-1 promoter. In particular, the NF-kappaB motif in the HIV long terminal repeat (LTR) represents a Raf-responsive element in fibroblasts. Regulation of the Raf kinase in T cells differs from findings with a variety of cell lines that the catalytic domain of Raf (Raf(delta26-303)) shows no activity. In this study, we restored the activity of the kinase in T cells by fusing its catalytic domain to the CAAX motif (-Cx) of Ras, thus targeting the enzyme to the plasma membrane. Constitutive activity of Raf was demonstrated by phosphorylation of mitogen-activated protein kinase kinase (MEK) and endogenous mitogen-activated protein kinase 1/2 (ERK1/2) in A3.01 T cells transfected with Raf(delta26-303)-Cx. Membrane-targeted Raf also stimulates NF-kappaB, as judged by kappaB-dependent reporter assays and enhanced NF-kappaB p65 binding on band shift analysis. Moreover, we found that active Raf transactivates the HIV(NL4-3) LTR in A3.01 T lymphocytes and that dominant negative Raf (C4) blocked 12-O-tetradecanoylphorbol-13-acetate induced transactivation. When cotransfected with infectious HIV(NL4-3) DNA, membrane-targeted Raf induces viral replication up to 10-fold over basal levels, as determined by the release of newly synthesized p24gag protein. Our study clearly demonstrates that the activity of the catalytic domain of Raf in A3.01 T cells is dependent on its cellular localization. The functional consequences of active Raf in T lymphocytes include not only NF-kappaB activation and transactivation of the HIV(NL4-3) LTR but also synthesis and release of HIV particles.
- Published
- 1998
- Full Text
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18. Unexpected behavior of H2Kb mutant DNAs in denaturing gradient gel electrophoresis.
- Author
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Weber CK, Shaffer DJ, and Sidman CL
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- Animals, Base Sequence, DNA isolation & purification, Haplotypes, Mice, Mice, Inbred C57BL, Mice, Mutant Strains, Molecular Sequence Data, Nucleic Acid Conformation, Nucleic Acid Denaturation, Polymerase Chain Reaction, DNA genetics, Electrophoresis, Polyacrylamide Gel methods, Mutation
- Abstract
Denaturing gradient gel electrophoresis (DGGE) is based upon the different melting behaviors of DNA molecules in a chemical denaturant gradient according to their sequences. This technique has recently become a widespread tool to detect mutations. The introduction of a GC-clamp enables the detection of most single base differences between two DNA molecules. As a test system we have applied the polymerase chain reaction (PCR) in combination with DGGE to detect a number of mutations in the mouse H2Kb DNA sequence. A wide variety of spontaneous in vivo mutations of this haplotype have been reported in the C57BL/6J mouse strain and are clustered in the alpha 1 and alpha 2 domains. The combination of PCR and DGGE revealed almost all base changes present in the H2Kb mutants used. However, most of the PCR products of these mutants showed melting behavior which is not easily predicted. We suggest that in addition to current simple theory, which considers that the migration of a DNA molecule in a denaturing gradient depends primarily on its initial melting behavior, additional factors such as secondary structure in partially melted molecules may play a role and can be used to detect mutations.
- Published
- 1991
- Full Text
- View/download PDF
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