98 results on '"Wenjin Yu"'
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2. Fine mapping of TFL, a major gene regulating fruit length in snake gourd (Trichosanthes anguina L)
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Qingwei Jiang, Peng Wang, Yuanchao Xu, Bingying Zou, Shishi Huang, Yuancai Wu, Yongqiang Li, Chuan Zhong, and Wenjin Yu
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Snake gourd ,Fruit length ,Map-based cloning ,Molecular marker-assisted selection ,MADS-box ,Botany ,QK1-989 - Abstract
Abstract Fruit length is a crucial agronomic trait of snake gourd (Trichosanthes anguina L); however, genes associated with fruit length have not been characterised. In this study, F2 snake gourd populations were generated by crossing the inbred lines, S1 and S2 (fruit lengths: 110 and 20 cm, respectively). Subsequently, bulk segregant analysis, sequencing, and fine-mapping were performed on the F2 population to identify target genes. Our findings suggest that the fruit length of snake gourd is regulated by a major-effect regulatory gene. Mining of genes regulating fruit length in snake gourd to provide a basis for subsequent selection and breeding of new varieties. Genotype-phenotype association analysis was performed on the segregating F2 population comprising 6,000 plants; the results indicate that the target gene is located on Chr4 (61,846,126–61,865,087 bp, 18.9-kb interval), which only carries the annotated candidate gene, Tan0010544 (designated TFL). TFL belongs to the MADS-box family, one of the largest transcription factor families. Sequence analysis revealed a non-synonymous mutation of base C to G at position 202 in the coding sequence of TFL, resulting in the substitution of amino acid Gln to Glu at position 68 in the protein sequence. Subsequently, an InDel marker was developed to aid the marker-assisted selection of TFL. The TFL in the expression parents within the same period was analysed using quantitative real-time PCR; the TFL expression was significantly higher in short fruits than long fruits. Therefore, TFL can be a candidate gene for determining the fruit length in snake gourd. Collectively, these findings improve our understanding of the genetic components associated with fruit length in snake gourds, which could aid the development of enhanced breeding strategies for plant species.
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- 2024
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3. Carbon monoxide is involved in melatonin-enhanced drought resistance in tomato seedlings by enhancing chlorophyll synthesis pathway
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Yunzhi Liu, Junrong Xu, Xuefang Lu, Mengxiao Huang, Yuanzhi Mao, Chuanghao Li, Wenjin Yu, and Changxia Li
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Carbon monoxide ,Melatonin ,Drought stress ,Chlorophyll synthesis ,Genes expression ,Botany ,QK1-989 - Abstract
Abstract Background Drought is thought to be a major abiotic stress that dramatically limits tomato growth and production. As signal molecule, melatonin (MT) and carbon monoxide (CO) can enhance plant stress resistance. However, the effect and underlying mechanism of CO involving MT-mediated drought resistance in seedling growth remains unknown. In this study, tomato (Solanum lycopersicum L. ‘Micro-Tom’) seedlings were used to investigate the interaction and mechanism of MT and CO in response to drought stress. Results The growth of tomato seedlings was inhibited significantly under drought stress. Exogenous MT or CO mitigated the drought-induced impairment in a dose-dependent manner, with the greatest efficiency provided by 100 and 500 µM, respectively. But application of hemoglobin (Hb, a CO scavenger) restrained the positive effects of MT on the growth of tomato seedlings under drought stress. MT and CO treatment promoted chlorophyll a (Chl a) and chlorophyll a (Chl b) accumulations. Under drought stress, the intermediate products of chlorophyll biosynthesis such as protoporphyrin IX (Proto IX), Mg-protoporphyrin IX (Mg-Proto IX), potochlorophyllide (Pchlide) and heme were increased by MT or CO, but uroporphyrinogen III (Uro III) content decreased in MT-treated or CO-treated tomato seedlings. Meanwhile, MT or CO up-regulated the expression of chlorophyll and heme synthetic-related genes SlUROD, SlPPOX, SlMGMT, SlFECH, SlPOR, SlChlS, and SlCAO. However, the effects of MT on chlorophyll biosynthesis were almost reversed by Hb. Conclusion The results suggested that MT and CO can alleviate drought stress and facilitate the synthesis of Chl and heme in tomato seedlings. CO played an essential role in MT-enhanced drought resistance via facilitating chlorophyll biosynthesis pathway.
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- 2024
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4. Interaction between ABA and NO in plants under abiotic stresses and its regulatory mechanisms
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Junrong Xu, Xuefang Lu, Yunzhi Liu, Weisen Lan, Zhien Wei, Wenjin Yu, and Changxia Li
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environmental stresses ,regulatory pathways ,metabolic pathways ,abscisic acid ,nitric oxide ,crosstalk ,Plant culture ,SB1-1110 - Abstract
Abscisic acid (ABA) and nitric oxide (NO), as unique signaling molecules, are involved in plant growth, developmental processes, and abiotic stresses. However, the interaction between ABA and NO under abiotic stresses has little been worked out at present. Therefore, this paper reviews the mechanisms of crosstalk between ABA and NO in the regulation of plants in response to environmental stresses. Firstly, ABA-NO interaction can alleviate the changes of plant morphological indexes damaged by abiotic stresses, for instance, root length, leaf area, and fresh weight. Secondly, regulatory mechanisms of interaction between ABA and NO are also summarized, such as reactive oxygen species (ROS), antioxidant enzymes, proline, flavonoids, polyamines (PAs), ascorbate-glutathione cycle, water balance, photosynthetic, stomatal movement, and post−translational modifications. Meanwhile, the relationships between ABA and NO are established. ABA regulates NO through ROS at the physiological level during the regulatory processes. At the molecular level, NO counteracts ABA through mediating post-translational modifications. Moreover, we also discuss key genes related to the antioxidant enzymes, PAs biosynthesis, ABA receptor, NO biosynthesis, and flavonoid biosynthesis that are regulated by the interaction between ABA and NO under environmental stresses. This review will provide new guiding directions for the mechanism of the crosstalk between ABA and NO to alleviate abiotic stresses.
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- 2024
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5. Combined BSA-Seq and RNA-Seq to Identify Potential Genes Regulating Fruit Size in Bottle Gourd (Lagenaria siceraria L.)
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Huarong Fang, Shishi Huang, Ruirui Li, Peng Wang, Qingwei Jiang, Chuan Zhong, Yanjuan Yang, and Wenjin Yu
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bottle gourd ,fruit size ,BSA-seq ,transcriptome ,Botany ,QK1-989 - Abstract
Fruit size is a crucial agronomic trait in bottle gourd, impacting both yield and utility. Despite its significance, the regulatory mechanism governing fruit size in bottle gourd remains largely unknown. In this study, we used bottle gourd (small-fruited H28 and large-fruited H17) parent plants to measure the width and length of fruits at various developmental stages, revealing a single ‘S’ growth curve for fruit expansion. Paraffin section observations indicated that both cell number and size significantly influence bottle gourd fruit size. Through bulked segregant analysis and combined genotype–phenotype analysis, the candidate interval regulating fruit size was pinpointed to 17,747,353 bp–18,185,825 bp on chromosome 9, encompassing 0.44 Mb and including 44 genes. Parental fruits in the rapid expansion stage were subjected to RNA-seq, highlighting that differentially expressed genes were mainly enriched in pathways related to cell wall biosynthesis, sugar metabolism, and hormone signaling. Transcriptome and resequencing analysis, combined with gene function annotation, identified six genes within the localized region as potential regulators of fruit size. This study not only maps the candidate interval of genes influencing fruit size in bottle gourd through forward genetics, but also offers new insights into the potential molecular mechanisms underlying this trait through transcriptome analysis.
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- 2024
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6. Global Infectious Diseases from April-June 2024: Periodic Analysis
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Yi Luo, Guodan Li, Lin Lin, Dongliang Liu, Yinfu Sun, Taihan Li, Yufan Wu, Qi Xiang, Wenjin Yu, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases pose a huge threat to human health. Human infectious diseases, especially infections originating from zoonotic or vector-borne sources, are an important global challenge. With the rising number of humans that engage in international travel, infectious disease outbreaks can spread rapidly across continents and borders worldwide. It is therefore important to monitor the transmission of infectious disease efficiently to prevent epidemics. We obtained surveillance data from the Shusi Tech Global Epidemic Information Monitoring System and comprehensively analyzed the timing and location of outbreaks in infected populations from April-June 2024.
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- 2024
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7. Global Infectious Diseases between January and March 2024: Periodic Analysis
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Tingting Jiang, Xiaona Zhao, Zhiyuan Tao, Jiazhen Zou, Wenjin Yu, Minjing He, Dayong Gu, Shuqiong Zhang, Wanyi Zhang, and Hopui Ho
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
In recent years, humanity has faced formidable challenges posed by infectious diseases. For example, previously controlled infectious diseases have undergone resurgences, while ongoing pathogen mutations have given rise to drug-resistant strains. These developments, coupled with changes in natural and societal factors, have contributed to the emergence of new infectious diseases. Spring is a season prone to infectious diseases, with common examples including influenza, measles, smallpox, and dengue fever. These diseases are primarily transmitted through respiratory droplets, airborne transmission, and close contact. To gain insight into the global distribution of infectious diseases we analyzed data from the Global Epidemic Information Monitoring System, which was developed by Shusi Technology, from January to March 2024.
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- 2024
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8. Nervous system manifestations related to COVID-19 and their possible mechanisms
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Zhen Xie, Hao Hui, Zhihan Zhao, Wenjin Yu, Rui Wu, Yanzhao Zhu, Yuan Song, Bingqing Cao, Wenzhen Shi, Di Zhao, Yunsong Zhao, Junchao Lv, Qian Yao, Yan Duan, Jingwen Li, Haijun Zhang, Linfu Zhou, Xiaotian Wang, Ye Tian, and Gang Zhao
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COVID-19 ,SARS-CoV-2 ,Neuroinvasion ,CNS ,PNS ,Neurology ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
In December 2019, the novel coronavirus disease (COVID-19) due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection broke. With the gradual deepening understanding of SARS-CoV-2 and COVID-19, researchers and clinicians noticed that this disease is closely related to the nervous system and has complex effects on the central nervous system (CNS) and peripheral nervous system (PNS). In this review, we summarize the effects and mechanisms of SARS-CoV-2 on the nervous system, including the pathways of invasion, direct and indirect effects, and associated neuropsychiatric diseases, to deepen our knowledge and understanding of the relationship between COVID-19 and the nervous system.
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- 2022
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9. Global Infectious Diseases between September and December 2023: Periodical Analysis
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Junzi Liao, Yufan Wu, Yinfu Sun, Qi Xiang, Taihan Li, Yi Luo, Guodan Li, Wenjin Yu, Dongliang Liu, Shiping He, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
A plethora of infectious diseases have plagued mankind since the dawn of civilization. Historically, humans have suffered from a range of infectious diseases, including MPOX, Ebola virus, dengue virus, malaria, and influenza. Many respiratory infectious diseases are more likely to occur in cold weather. Due to the speed and easy mode of transmission, and short latency, respiratory infectious diseases are more likely to cause epidemics. It is more likely that influenza will circulate during the autumn-winter months, resulting in great outbreaks of influenza-like illnesses and even serious seasonal epidemics in some cases. We obtained surveillance data from the Shusi Tech’s Global Epidemic Information Monitoring System and comprehensively analyzed the timing and location of outbreaks in infected populations from September-December 2023.
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- 2024
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10. Fully automating LI-RADS on MRI with deep learning-guided lesion segmentation, feature characterization, and score inference
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Ke Wang, Yuehua Liu, Hongxin Chen, Wenjin Yu, Jiayin Zhou, and Xiaoying Wang
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LI-RADS ,clinical study ,lesion segmentation ,feature characterization ,problem formulation ,deep learning ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionLeveraging deep learning in the radiology community has great potential and practical significance. To explore the potential of fitting deep learning methods into the current Liver Imaging Reporting and Data System (LI-RADS) system, this paper provides a complete and fully automatic deep learning solution for the LI-RADS system and investigates its model performance in liver lesion segmentation and classification.MethodsTo achieve this, a deep learning study design process is formulated, including clinical problem formulation, corresponding deep learning task identification, data acquisition, data preprocessing, and algorithm validation. On top of segmentation, a UNet++-based segmentation approach with supervised learning was performed by using 33,078 raw images obtained from 111 patients, which are collected from 2010 to 2017. The key innovation is that the proposed framework introduces one more step called feature characterization before LI-RADS score classification in comparison to prior work. In this step, a feature characterization network with multi-task learning and joint training strategy was proposed, followed by an inference module to generate the final LI-RADS score.ResultsBoth liver segmentation and feature characterization models were evaluated, and comprehensive statistical analysis was conducted with detailed discussions. Median DICE of liver lesion segmentation was able to achieve 0.879. Based on different thresholds, recall changes within a range of 0.7 to 0.9, and precision always stays high greater than 0.9. Segmentation model performance was also evaluated on the patient level and lesion level, and the evaluation results of (precision, recall) on the patient level were much better at approximately (1, 0.9). Lesion classification was evaluated to have an overall accuracy of 76%, and most mis-classification cases happen in the neighboring categories, which is reasonable since it is naturally difficult to distinguish LI-RADS 4 from LI-RADS 5.DiscussionIn addition to investigating the performance of the proposed model itself, extensive comparison experiment was also conducted. This study shows that our proposed framework with feature characterization greatly improves the diagnostic performance which also validates the effectiveness of the added feature characterization step. Since this step could output the feature characterization results instead of simply generating a final score, it is able to unbox the black-box for the proposed algorithm thus improves the explainability.
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- 2023
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11. Forward genetic studies reveal LsAPRR2 as a key gene in regulating the green color of pericarp in bottle gourd (Lagenaria siceraria)
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Yulai Huo, Gui Zhang, Wenjin Yu, Zhengguo Liu, Mujie Shen, Rongchong Zhao, Shengping Hu, Xuyang Zheng, Peng Wang, and Yanjuan Yang
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bottle gourd ,rind color ,chlorophyll ,APRR2 ,promoter variation ,race ,Plant culture ,SB1-1110 - Abstract
The fruit peel color is an important factor that affects its quality. However, genes involved in regulating pericarp color in bottle gourd (Lagenaria siceraria) have not been explored to date. Genetic analysis of color traits in bottle gourd peel through a genetic population of six generations demonstrated that the green color of peels is inherited as a single gene dominant trait. Combined phenotype-genotype analysis of recombinant plants using BSA-seq mapped the candidate gene to a 22.645 Kb interval at the head end of chromosome 1. We observed that the final interval contained only one gene, LsAPRR2 (HG_GLEAN_10010973). Sequence and spatiotemporal expression analyses of LsAPRR2 unraveled two nonsynonymous mutations (A→G) and (G→C) in the parental CDS sequences. Further, LsAPRR2 expression was higher in all green-skinned bottle gourds (H16) at various stages of fruit development than in white-skinned bottle gourds (H06). Cloning and sequence comparison of the two parental LsAPRR2 promoter regions indicated 11 bases insertion and 8 SNPs mutations in the region -991~-1033, upstream of the start codon in white bottle gourd. Proof of GUS reporting system, Genetic variation in this fragment significantly reduced the expression of LsAPRR2 in the pericarp of white bottle gourd. In addition, we developed a tightly linked (accuracy 93.88%) InDel marker for the promoter variant segment. Overall, the current study provides a theoretical basis for comprehensive elucidation of the regulatory mechanisms underlying the determination of bottle gourd pericarp color. This would further help in the directed molecular design breeding of bottle gourd pericarp.
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- 2023
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12. Global Infectious Diseases in August 2023: A Monthly Analysis
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Jiawen Huang, Yi Luo, Jiazhen Zou, Yufan Wu, Yinfu Sun, Qi Xiang, Minjing He, Shuqiong Zhang, Wenjin Yu, Qun Su, Taihan Li, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases frequently affect children and adults worldwide. Owing to their specific biology and mode of transmission, the presence of infected individuals or carriers in a region often leads to outbreaks of the disease in that region, and in severe cases, to the death of the infected individual. Infectious diseases have been one of the main causes of mass disability or death in humans for centuries. Surveillance of infectious diseases on a continental scale is therefore important for assessing, recognizing, and preventing the risks that these diseases may pose to animal and human health on a global scale. This report focuses on global infectious disease outbreaks and systematically summarises the timing and location of outbreaks in infected populations between 24 July and 23 August 2023 based on the Global Outbreak Information Surveillance System (GOSIS) of Shusi Technologies.
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- 2023
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13. Global Infectious Diseases in July 2023: Monthly Analysis
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Guodan Li, Ying Zhou, Yinfu Sun, Qi Xiang, Tingting Jiang, Jiazhen Zou, Yufan Wu, Taihan Li, Yi Luo, Minjing He, Shuqiong Zhang, Dayong Gu, Shiping He, Dongliang Liu, Wenjin Yu, and Jing Xie
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Many infectious diseases are ubiquitous and pose persistent adverse effects on public health. Infectious diseases have also been leading causes of high mortality in different periods of history. Real-time monitoring and analysis of global infectious disease transmission can provide a comprehensive understanding of critical information regarding the transmission routes, scope, velocity, and effects of viruses or bacteria. Here, using Shusi Tech’s Global Epidemic Information Monitoring System, we analyzed the prevalence of infectious diseases worldwide. We describe types of infectious diseases with relatively low incidence from 24 June 2023 to 23 July 2023 as comprehensibly as possible.
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- 2023
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14. Strigolactone-Mediated Trehalose Enhances Salt Resistance in Tomato Seedlings
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Xuefang Lu, Xiaojun Liu, Junrong Xu, Yunzhi Liu, Yuzhen Chi, Wenjin Yu, and Changxia Li
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strigolactone ,trehalose ,salt ,regulator pathway ,genes expression ,Plant culture ,SB1-1110 - Abstract
Strigolactones (SLs) are newly discovered plant hormones that modulate a variety of physiological and biochemical processes and plant stress responses. In this study, SLs’ synthetic analog, GR24, significantly improved the growth of tomato seedlings under salt stress, while SLs’ synthesis inhibitor, TIS108, inversed the positive role of SLs, indicating that SLs could effectively enhance salt-stress resistance in tomato. To further explore the mechanism of SL-modulated trehalose (Tre) in response to salt stress, Tre metabolism was analyzed during this process. GR24 increased the endogenous Tre and starch contents and decreased the glucose (Glu) level under salt-stress conditions. Additionally, the TPS and TPP activities were enhanced by GR24 and the activity of THL was inhibited by GR24 under salt stress; thereafter, Tre biosynthesis-related genes, including TPS1, TPS2, TPP1, and TPP2, were also upregulated by GR24 under salt stress. However, the function of GR24 in Tre metabolism was inhibited by TIS108. Thus, the results indicated that GR24 improved the expression levels or activities of Tre biosynthesis-related genes or enzymes and inhibited the transcript level or activity of genes or enzymes related to Tre degradation, respectively, resulting in an increase in the endogenous Tre level and, therefore, weakening the salt toxicity of tomato seedlings.
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- 2023
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15. Global Infectious Diseases in June 2023: Monthly Analysis
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Shuqiong Zhang, Xin Fu, Shiping He, Jiazhen Zou, Yi Luo, Guodan Li, Qi Xiang, Taihan Li, Dayong Gu, Qun Su, Minjing He, and Wenjin Yu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases are a class of diseases caused by various pathogens that can be transmitted between humans and animals or between humans and animals, thus seriously affecting the development of human society. To control the spread of infectious diseases worldwide and ensure the safety of people’s lives, it is essential to regularly analyze global infectious disease cases. This review is based on data from the World Health Organization, the Centers for Disease Control in countries around the world, Outbreak News Today and many other epidemiological websites to predict the global infectious disease outbreak trend. In addition, using the Shuci Technology global epidemic information monitoring system, we analyzed the distribution of infectious diseases that occurred around the world from 24 May 2023 to 23 June 2023.
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- 2023
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16. Comparative full-length transcriptome analysis by Oxford Nanopore Technologies reveals genes involved in anthocyanin accumulation in storage roots of sweet potatoes (Ipomoea batatas L.)
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Jun Xiong, Xiuhua Tang, Minzheng Wei, and Wenjin Yu
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Sweet potato ,Oxford Nanopore Technologies ,Full-length transcriptome ,Anthocyanin ,Storage roots ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Storage roots of sweet potatoes (Ipomoea batatas L.) with different colors vary in anthocyanin content, indicating different economically agronomic trait. As the newest DNA/RNA sequencing technology, Oxford Nanopore Technologies (ONT) have been applied in rapid transcriptome sequencing for investigation of genes related to nutrient metabolism. At present, few reports concern full-length transcriptome analysis based on ONT for study on the molecular mechanism of anthocyanin accumulation leading to color change of tuberous roots of sweet potato cultivars. Results The storage roots of purple-fleshed sweet potato (PFSP) and white-fleshed sweet potato (WFSP) at different developmental stages were subjected to anthocyanin content comparison by UV-visible spectroscopy as well as transcriptome analysis at ONT MinION platform. UV-visible spectrophotometric measurements demonstrated the anthocyanin content of PFSP was much higher than that of WFSP. ONT RNA-Seq results showed each sample generated average 2.75 GB clean data with Full-Length Percentage (FL%) over 70% and the length of N50 ranged from 1,192 to 1,395 bp, indicating reliable data for transcriptome analysis. Subsequent analysis illustrated intron retention was the most prominent splicing event present in the resulting transcripts. As compared PFSP with WFSP at the relative developmental stages with the highest (PH vs. WH) and the lowest (PL vs. WL) anthocyanin content, 282 and 216 genes were up-regulated and two and 11 genes were down-regulated respectively. The differential expression genes involved in flavonoid biosynthesis pathway include CCoAOMT, PpLDOX, DFR, Cytochrome P450, CHI, and CHS. The genes encoding oxygenase superfamily were significantly up-regulated when compared PFSP with WFSP at the relative developmental stages. Conclusions Comparative full-length transcriptome analysis based on ONT serves as an effective approach to detect the differences in anthocyanin accumulation in the storage roots of different sweet potato cultivars at transcript level, with noting that some key genes can now be closely related to flavonoids biosynthesis. This study helps to improve understanding of molecular mechanism for anthocyanin accumulation in sweet potatoes and also provides a theoretical basis for high-quality sweet potato breeding.
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- 2022
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17. Identification and Characterization of Csa-miR395s Reveal Their Involvements in Fruit Expansion and Abiotic Stresses in Cucumber
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Lin Lu, Weirong Luo, Wenjin Yu, Junguo Zhou, Xinfa Wang, and Yongdong Sun
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cucumber ,miR395 ,gene expression ,fruit expansion ,abiotic stress ,Plant culture ,SB1-1110 - Abstract
The miR395 plays an indispensable role in biochemical processes by regulating their target genes. However, little is known about the roles of miR395 in cucumber fruit expansion and response to abiotic stresses. Here, 4 Csa-miR395s and 8 corresponding target genes were identified in the cucumber genome. Csa-miR395s were all located on the same chromosome (Chr 5). Csa-miR395a/b/c and Csa-miR395d were distributed in different branches without a closer genetic relationship. Massive cis-acting elements, including light, phytohormone, and stress response elements, were detected in the promoter regions of Csa-MIR395s, indicating that Csa-miR395s might be involved in complex regulatory networks to control cucumber growth and development and stress response. In addition, Csa-miR395a/b/c shared the same target genes, and Csa-miR395d had its specific target genes. Tissue-specific expression analysis showed that Csa-miR395a/b/c were all expressed in the leaf, root, ovary, and expanded fruit of cucumber and highly expressed in the expanded fruits compared to the ovary, while Csa2G215520 and Csa1G502860 (target genes of Csa-miR395a/b/c) presented a downregulated trend in the expanded fruit compared to the ovary. Meanwhile, the protein co-expression network revealed that these target genes had interactions in sulfur metabolism. These results suggested that Csa-miR395a/b/c targeting Csa2G215520 and Csa1G502860 might promote cucumber fruit expansion by affecting sulfur metabolism. Additionally, Quantitative Real-time PCR analysis validated that Csa-miR395s could be regulated by NaCl stress, and Csa-miR395a/b/c could respond to PEG stress, which further confirmed the reliability of cis-acting elements data. Taken together, our results could be helpful for further exploration of the functions of miR395s in cucumber fruit expansion and response to abiotic stresses.
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- 2022
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18. Multifunctional π‐Conjugated Additives for Halide Perovskite
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Yinan Lao, Shuang Yang, Wenjin Yu, Haoqing Guo, Yu Zou, Zhijian Chen, and Lixin Xiao
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additives ,halide perovskites ,light‐emitting diodes ,solar cells ,π‐conjugation ,Science - Abstract
Abstract Additive is a conventional way to enhance halide perovskite active layer performance in multiaspects. Among them, π‐conjugated molecules have significantly special influence on halide perovskite due to the superior electrical conductivity, rigidity property, and good planarity of π‐electrons. In particular, π‐conjugated additives usually have stronger interaction with halide perovskites. Therefore, they help with higher charge mobility and longer device lifetime compared with alkyl‐based molecules. In this review, the detailed effect of conjugated molecules is discussed in the following parts: defect passivation, lattice orientation guidance, crystallization assistance, energy level rearrangement, and stability improvement. Meanwhile, the roles of conjugated ligands played in low‐dimensional perovskite devices are summarized. This review gives an in‐depth discussion about how conjugated molecules interact with halide perovskites, which may help understand the improved performance mechanism of perovskite device with π‐conjugated additives. It is expected that π‐conjugated organic additives for halide perovskites can provide unprecedented opportunities for the future improvement of perovskite devices.
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- 2022
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19. Global Infectious Diseases in May 2023: Monthly Analysis
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Yinfu Sun, Tingting Jiang, Jiazhen Zou, Yufan Wu, Taihan Li, Yi Luo, Minjing He, Shuqiong Zhang, Dongliang Liu, Guodan Li, Dayong Gu, Wenjin Yu, Qi Xiang, Shiping He, and Qun Su
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
In the past 5 years, there has been a growing focus on infectious diseases, such as viral infections (coronavirus, Mpox, and influenza), sudden pandemics, and persistent bacterial infections (cholera, malaria, and tuberculosis) that continue to be a challenge in epidemic areas. We analyzed epidemic data from dozens of infectious diseases between 24 April and 23 May 2023 using Shusi Tech’s Global Epidemic Information Monitoring System. This analysis will provide a quick overview of the global epidemic status, and will facilitate the prediction and assessment of future pandemics.
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- 2023
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20. Strigolactone Alleviates the Adverse Effects of Salt Stress on Seed Germination in Cucumber by Enhancing Antioxidant Capacity
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Changxia Li, Xuefang Lu, Yunzhi Liu, Junrong Xu, and Wenjin Yu
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GR24 ,TIS108 ,alleviation ,antioxidant system ,gene expression ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Strigolactones (SLs), as a new phytohormone, regulate various physiological and biochemical processes, and a number of stress responses, in plants. In this study, cucumber ‘Xinchun NO. 4’ is used to study the roles of SLs in seed germination under salt stress. The results show that the seed germination significantly decreases with the increase in the NaCl concentrations (0, 1, 10, 50, and 100 mM), and 50 mM NaCl as a moderate stress is used for further analysis. The different concentrations of SLs synthetic analogs GR24 (1, 5, 10, and 20 μM) significantly promote cucumber seed germination under NaCl stress, with a maximal biological response at 10 μM. An inhibitor of strigolactone (SL) synthesis TIS108 suppresses the positive roles of GR24 in cucumber seed germination under salt stress, suggesting that SL can alleviate the inhibition of seed germination caused by salt stress. To explore the regulatory mechanism of SL-alleviated salt stress, some contents, activities, and genes related to the antioxidant system are measured. The malondialdehyde (MDA), H2O2, O2−, and proline contents are increased, and the levels of ascorbic acid (AsA) and glutathione (GSH) are decreased under salt stress conditions, while GR24 treatment reduces MDA, H2O2, O2−, and proline contents, and increases AsA and GSH contents during seed germination under salt stress. Meanwhile, GR24 treatment enhances the decrease in the activities of antioxidant enzymes caused by salt stress [superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX)], following which antioxidant-related genes SOD, POD, CAT, APX, and GRX2 are up-regulated by GR24 under salt stress. However, TIS108 reversed the positive effects of GR24 on cucumber seed germination under salt stress. Together, the results of this study revealed that GR24 regulates the expression levels of genes related to antioxidants and, therefore, regulates enzymatic activity and non-enzymatic substances and enhances antioxidant capacity, alleviating salt toxicity during seed germination in cucumber.
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- 2023
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21. Global Infectious Diseases in April 2023: Monthly Analysis
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Yufan Wu, Jiazhen Zou, Yinfu Sun, Qi Xiang, Minjing He, Shuqiong Zhang, Dongliang Liu, Guodan Li, Taihan Li, Yi Luo, Qun Su, Shiping He, Wenjin Yu, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Thousands of years have passed since infectious diseases first endangered human health as the most potentially lethal and debilitating diseases worldwide. The global incidence of infectious diseases has increased significantly over the past decades, such as COVID-19, cholera, dengue, and influenza. Key elements in combating and controlling diseases include monitoring and reporting infectious disease timelines and geographic distribution. We obtained surveillance data from Shusi Tech’s Global Epidemic Information Monitoring System and comprehensively analyzed the timing and location of outbreaks in infected populations from 24 March 2023 to 23 April 2023. Recent worldwide outbreaks of infectious diseases highlight the need to implement effective monitoring strategies and warning systems.
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- 2023
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22. Global Infectious Diseases in March 2023: Monthly Analysis
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Taihan Li, Yi Luo, Jiazhen Zou, Yufan Wu, Yinfu Sun, Qi Xiang, Minjing He, Shuqiong Zhang, Dongliang Liu, Guodan Li, Wenjin Yu, Qun Su, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases pose a major burden on public health and economic stability among societies worldwide. For centuries, they have been among the leading causes of death and disability, and are currently presenting growing challenges to health security and human progress. This report focuses on global outbreaks of infectious diseases, relying on Shusi Tech’s Global Epidemic Information Monitoring System to systematically summarize outbreak timing and location in infected populations from February 24, 2023, to March 23, 2023. Therefore, surveillance of infectious diseases on a continental scale is important to assess, recognize and protect against the risks that these diseases may pose to animal, domestic animal and human health on a global scale.
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- 2023
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23. Deep Learning-Based Classification of Cancer Cell in Leptomeningeal Metastasis on Cytomorphologic Features of Cerebrospinal Fluid
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Wenjin Yu, Yangyang Liu, Yunsong Zhao, Haofan Huang, Jiahao Liu, Xiaofeng Yao, Jingwen Li, Zhen Xie, Luyue Jiang, Heping Wu, Xinhao Cao, Jiaming Zhou, Yuting Guo, Gaoyang Li, Matthew Xinhu Ren, Yi Quan, Tingmin Mu, Guillermo Ayuso Izquierdo, Guoxun Zhang, Runze Zhao, Di Zhao, Jiangyun Yan, Haijun Zhang, Junchao Lv, Qian Yao, Yan Duan, Huimin Zhou, Tingting Liu, Ying He, Ting Bian, Wen Dai, Jiahui Huai, Xiyuan Wang, Qian He, Yi Gao, Wei Ren, Gang Niu, and Gang Zhao
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leptomeningeal metastasis (LM) ,deep learning ,cytology ,CSF ,cancer cell ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundIt is a critical challenge to diagnose leptomeningeal metastasis (LM), given its technical difficulty and the lack of typical symptoms. The existing gold standard of diagnosing LM is to use positive cerebrospinal fluid (CSF) cytology, which consumes significantly more time to classify cells under a microscope.ObjectiveThis study aims to establish a deep learning model to classify cancer cells in CSF, thus facilitating doctors to achieve an accurate and fast diagnosis of LM in an early stage.MethodThe cerebrospinal fluid laboratory of Xijing Hospital provides 53,255 cells from 90 LM patients in the research. We used two deep convolutional neural networks (CNN) models to classify cells in the CSF. A five-way cell classification model (CNN1) consists of lymphocytes, monocytes, neutrophils, erythrocytes, and cancer cells. A four-way cancer cell classification model (CNN2) consists of lung cancer cells, gastric cancer cells, breast cancer cells, and pancreatic cancer cells. Here, the CNN models were constructed by Resnet-inception-V2. We evaluated the performance of the proposed models on two external datasets and compared them with the results from 42 doctors of various levels of experience in the human-machine tests. Furthermore, we develop a computer-aided diagnosis (CAD) software to generate cytology diagnosis reports in the research rapidly.ResultsWith respect to the validation set, the mean average precision (mAP) of CNN1 is over 95% and that of CNN2 is close to 80%. Hence, the proposed deep learning model effectively classifies cells in CSF to facilitate the screening of cancer cells. In the human-machine tests, the accuracy of CNN1 is similar to the results from experts, with higher accuracy than doctors in other levels. Moreover, the overall accuracy of CNN2 is 10% higher than that of experts, with a time consumption of only one-third of that consumed by an expert. Using the CAD software saves 90% working time of cytologists.ConclusionA deep learning method has been developed to assist the LM diagnosis with high accuracy and low time consumption effectively. Thanks to labeled data and step-by-step training, our proposed method can successfully classify cancer cells in the CSF to assist LM diagnosis early. In addition, this unique research can predict cancer’s primary source of LM, which relies on cytomorphologic features without immunohistochemistry. Our results show that deep learning can be widely used in medical images to classify cerebrospinal fluid cells. For complex cancer classification tasks, the accuracy of the proposed method is significantly higher than that of specialist doctors, and its performance is better than that of junior doctors and interns. The application of CNNs and CAD software may ultimately aid in expediting the diagnosis and overcoming the shortage of experienced cytologists, thereby facilitating earlier treatment and improving the prognosis of LM.
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- 2022
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24. Lead‐free Double Perovskite Cs2AgIn0.9Bi0.1Cl6 Quantum Dots for White Light‐Emitting Diodes
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Yuqing Zhang, Zehao Zhang, Wenjin Yu, Yong He, Zhijian Chen, Lixin Xiao, Jun‐jie Shi, Xuan Guo, Shufeng Wang, and Bo Qu
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double perovskites ,electrically excited ,lead‐free ,quantum dots ,white light‐emitting diodes ,Science - Abstract
Abstract Perovskite‐based optoelectronic devices have attracted considerable attention owing to their excellent device performances and facile solution processing. However, the toxicity and intrinsic instability of lead‐based perovskites have limited their commercial development. Moreover, the provision of an efficient white emission from a single perovskite layer is challenging. Here, novel electrically excited white light‐emitting diodes (WLEDs) based on lead‐free double perovskite Cs2AgIn0.9Bi0.1Cl6 quantum dots (QDs) without any phosphor are fabricated for the first time. Density functional theory calculations are carried out to clarify the mechanism of absorption and recombination in Cs2AgIn0.9Bi0.1Cl6 with Bi‐doping breaking the parity‐forbidden transition of the direct bandgap. Microzone optical and electronic characterizations reveal that the broadband emission of Cs2AgIn0.9Bi0.1Cl6 QDs originates from self‐trapped excitons, and luminescent properties are unchanged after the film deposition. The QD‐WLED exhibits excellent Commission Internationale de L'Eclairage color coordinates, correlated color temperature and relatively high color rendering index of (0.32, 0.32), 6432 K, and 94.5, respectively. The maximum luminance of 158 cd m−2 is achieved by triphenylphosphine oxide passivation, and this lead‐free QD‐WLED exhibits a superior stability in ambient air with a long T50 ≈48.53 min. Therefore, lead‐free perovskite Cs2AgIn0.9Bi0.1Cl6 QDs are promising candidates for use in WLEDs in the future.
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- 2022
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25. Establishment and Verification of Neural Network for Rapid and Accurate Cytological Examination of Four Types of Cerebrospinal Fluid Cells
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Luyue Jiang, Gang Niu, Yangyang Liu, Wenjin Yu, Heping Wu, Zhen Xie, Matthew Xinhu Ren, Yi Quan, Zhuangde Jiang, Gang Zhao, and Wei Ren
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neural network ,white blood cell ,cerebral spinal fluid ,classification ,clinical ,image recognition ,Medicine (General) ,R5-920 - Abstract
Fast and accurate cerebrospinal fluid cytology is the key to the diagnosis of many central nervous system diseases. However, in actual clinical work, cytological counting and classification of cerebrospinal fluid are often time-consuming and prone to human error. In this report, we have developed a deep neural network (DNN) for cell counting and classification of cerebrospinal fluid cytology. The May-Grünwald-Giemsa (MGG) stained image is annotated and input into the DNN network. The main cell types include lymphocytes, monocytes, neutrophils, and red blood cells. In clinical practice, the use of DNN is compared with the results of expert examinations in the professional cerebrospinal fluid room of a First-line 3A Hospital. The results show that the report produced by the DNN network is more accurate, with an accuracy of 95% and a reduction in turnaround time by 86%. This study shows the feasibility of applying DNN to clinical cerebrospinal fluid cytology.
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- 2022
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26. Global Infectious Diseases in February 2023: Monthly Analysis
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Dongliang Liu, Guodan Li, Qun Su, Yi Luo, Taihan Li, Yufan Wu, Jiazhen Zou, Yinfu Sun, Qi Xiang, Shiping He, Wenjin Yu, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Public health security in human societies is placed under enormous strain by infectious disease epidemics. According to the WHO, COVID-19 and Mpox remain on the list of PHEICs, whereas cholera, dengue, and other contagious diseases remain endemic in several countries and regions. Data on prevalent infectious diseases have been collected worldwide in recent weeks, and may provide new ideas for international collaboration in public health.
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- 2023
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27. Global Infectious Diseases in December 2022: Monthly Analysis
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Qi Xiang, Taihan Li, Minjing He, Shuqiong Zhang, Yi Luo, Jiazhen Zou, Guodan Li, Qun Su, Shiping He, Wenjin Yu, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
The emergence and reoccurrence of infectious diseases constitute a significant threat to human health. Data for this paper were mainly obtained from official websites, such as the WHO and national CDC websites. The report summarizes and analyzes information on infectious diseases for early outbreak monitoring from 24 November to 23 December 2022. Monkeypox cases declined in December 2022 with few deaths, while cholera infections have increased in African regions and war-torn countries. Most sub-Saharan countries are affected by insect-borne diseases, such as dengue, Lassa, and chikungunya fever.
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- 2023
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28. Global Infectious Diseases in January 2023: Monthly Analysis
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Minjing He, Shuqiong Zhang, Qun Su, Dongliang Liu, Guodan Li, Qi Xiang, Yinfu Sun, Yi Luo, Taihan Li, Yufan Wu, Jiazhen Zou, Shiping He, Wenjin Yu, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases are a major threat to global health and the economic stability of societies worldwide. To prevent outbreaks, monitoring the growth trends of infectious diseases appears to be particularly important and necessary. Herein, data from epidemiological websites, such as the World Health Organization and National Health Council are used to illustrate the outbreak trends for infectious diseases worldwide. In the context of the COVID-19 pandemic, a global resurgence in other infectious diseases has been observed, particularly influenza in the United States. Proper surveillance and effective strategies are urgently required to keep emerging infectious diseases under control.
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- 2023
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29. Carbon-based perovskite solar cells with electron and hole-transporting/-blocking layers
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Wenjin Yu, Yu Zou, Shining Zhang, Zishi Liu, Cuncun Wu, Bo Qu, Zhijian Chen, and Lixin Xiao
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carbon-electrode-based PSCs ,n-i-p architecture ,electron transport layer ,hole-transporting layer ,interface ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Towards commercialization of perovskite solar cells (PSCs), further reducing the cost and increasing the stability of PSCs have been the most important tasks of researchers, as the efficiency of single-junction PSCs has reached a competitive level among all kinds of single-junction solar cells. Carbon-electrode-based PSCs (CPSCs), as one of the most promising constructions for achieving stable economical PSCs, now attract enormous attention for their cost-effectiveness and stability. Here, we briefly review the development of CPSCs and reveal the importance of n-i-p architecture for state-of-the-art CPSCs. However, despite their promising potential, challenges still exist in CPSCs in the n-i-p architecture, which mainly stem from the incompact contact of the hole-transporting layer (HTL)/carbon electrode. Thus, new carbon materials and/or novel manufacturing methods should be proposed. In addition, HTL is yet to be appropriate for state-of-the-art CPSCs because the fabrication of carbon electrode could result in the destruction of the underlayer. To further enhance the performance of CPSCs, both the HTL and electron transport layer as well as their interfaces with perovskite active layer need to be improved. We recommend that the perovskite active layer, with its long carrier lifetime, strong carrier transport capability, and long-term stability, is necessary as well for improved performance of CPSCs. We also highlight current researches on CPSCs and provide a systematic review of various types of regulation tools.
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- 2023
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30. Identification and Application of BhAPRR2 Controlling Peel Colour in Wax Gourd (Benincasa hispida)
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Lianlian Ma, Zhengguo Liu, Zhikui Cheng, Jiquan Gou, Jieying Chen, Wenjin Yu, and Peng Wang
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APRR2 ,chlorophyll ,frameshift mutation ,peel color ,wax gourd ,Plant culture ,SB1-1110 - Abstract
Peel color is an important factor affecting commodity quality in vegetables; however, the genes controlling this trait remain unclear in wax gourd. Here, we used two F2 genetic segregation populations to explore the inheritance patterns and to clone the genes associated with green and white skin in wax gourd. The F2 and BC1 trait segregation ratios were 3:1 and 1:1, respectively, and the trait was controlled by nuclear genes. Bulked segregant analysis of both F2 plants revealed peaks on Chr5 exceeding the confidence interval. Additionally, 6,244 F2 plants were used to compress the candidate interval into a region of 179 Kb; one candidate gene, Bch05G003950 (BhAPRR2), encoding two-component response regulator-like protein Arabidopsis pseudo-response regulator2 (APRR2), which is involved in the regulation of peel color, was present in this interval. Two bases (GA) present in the coding sequence of BhAPRR2 in green-skinned wax gourd were absent from white-skinned wax gourd. The latter contained a frameshift mutation, a premature stop codon, and lacked 335 residues required for the protein functional region. The chlorophyll content and BhAPRR2 expression were significantly higher in green-skinned than in white-skinned wax gourd. Thus, BhAPRR2 may regulate the peel color of wax gourd. This study provides a theoretical foundation for further studies of the mechanism of gene regulation for the fruit peel color of wax gourd.
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- 2021
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31. Global Infectious Diseases in November 2022: Monthly Analysis
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Jiazhen Zou, Shiping He, Wenjin Yu, Guodan Li, Taihan Li, Qi Xiang, Dongliang Liu, Yi Luo, Yinfu Sun, Minjing He, Shuqiong Zhang, Qun Su, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases, such as COVID-19 and monkeypox, pose a severe threat to economic development in all countries, as well as to the health of people everywhere. The World Health Organization and National Health Council epidemiological websites were used herein as data sources. Shusi Tech’s Global Epidemic Information Monitoring System was used to analyze the data for infectious diseases, determine changes in global epidemics, determine the distribution and quantity of infectious disease cases from October 24, 2022 to November 23, 2022, and analyze their changing trends. Furthermore, the analysis of these data can be used to predict prevalence rates, and assess epidemic prevention and control measures.
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- 2022
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32. Global Infectious Diseases in October 2022: Monthly Analysis
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Yi Luo, Yinfu Sun, Wenjin Yu, Jiazhen Zou, Guodan Li, Taihan Li, Qi Xiang, Dongliang Liu, Shiping He, Qun Su, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
Infectious diseases continue to pose a major threat to worldwide public health. Infections by Coronavirus Disease 2019 have eased but continue to negatively affect international economic development. The situation of other infectious diseases, such as monkeypox and mosquito-borne diseases, became stable in October. Monitoring epidemic situation of infectious diseases can provide rapid insight into global transmission trends and assist in predicting epidemic situations. Visualizations and analyses summarizing the past few weeks of global data on major infectious diseases are provided.
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- 2022
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33. Global Infectious Diseases in September 2022: Monthly Analysis
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Guodan Li, Dongliang Liu, Wenjin Yu, Qi Xiang, Jiazhen Zou, Taihan Li, Yi Luo, Shiping He, Qun Su, and Dayong Gu
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Infectious and parasitic diseases ,RC109-216 ,Veterinary medicine ,SF600-1100 - Abstract
The threat of infectious diseases caused by pathogenic microorganisms to both human health and the economy is enormous. Coronavirus Disease 2019 (COVID-19) remains a global pandemic. In contrast to many other infectious diseases, monkeypox spreads rapidly and cannot be ignored. Collection of data on contagious diseases can provide quantitative evidence to support effective pandemic control strategies. Global data on predominant infectious diseases collected in the past several weeks and a summary of their epidemiology are presented herein.
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- 2022
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34. Roles of Hydrogen Gas in Plants under Abiotic Stress: Current Knowledge and Perspectives
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Changxia Li, Wenjin Yu, Yuancai Wu, and Yongqiang Li
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hydrogen gas ,environmental stresses ,regulatory pathways ,metabolisms ,genes ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Hydrogen gas (H2) is a unique molecular messenger, which is known to be involved in diverse physiological processes in plants, from seed germination to seedling growth to regulation of environmental stresses. In this review, we focus on the role of H2 in plant responses to abiotic stresses, such as temperature, osmotic stress, light, paraquat (PQ)-induced oxidative stresses, and metal stresses. In general, H2 can alleviate environmental stresses by improving the antioxidant defense system, photosynthetic capacity, re-establishing ion homeostasis and glutathione homeostasis, maintaining nutrient element homeostasis, mediating glucose metabolism and flavonoid pathways, regulating heme oxygenase-1 (HO-1) signaling, and interaction between H2 and nitric oxide (NO), carbonic oxide (CO), or plant hormones. In addition, some genes modulated by H2 under abiotic stresses are also discussed. Detailed evidence of molecular mechanisms for H2-mediated particular pathways under abiotic stress, however, is scarce. Further studies regarding the regulatory roles of H2 in modulating abiotic stresses research should focus on the molecular details of the particular pathways that are activated in plants. More research work will improve knowledge concerning possible applications of hydrogen-rich water (HRW) to respond to abiotic stresses with the aim of enhancing crop quality and economic value.
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- 2022
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35. Strigolactone-Mediated Trehalose Enhances Salt Resistance in Tomato Seedlings
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Li, Xuefang Lu, Xiaojun Liu, Junrong Xu, Yunzhi Liu, Yuzhen Chi, Wenjin Yu, and Changxia
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strigolactone ,trehalose ,salt ,regulator pathway ,genes expression - Abstract
Strigolactones (SLs) are newly discovered plant hormones that modulate a variety of physiological and biochemical processes and plant stress responses. In this study, SLs’ synthetic analog, GR24, significantly improved the growth of tomato seedlings under salt stress, while SLs’ synthesis inhibitor, TIS108, inversed the positive role of SLs, indicating that SLs could effectively enhance salt-stress resistance in tomato. To further explore the mechanism of SL-modulated trehalose (Tre) in response to salt stress, Tre metabolism was analyzed during this process. GR24 increased the endogenous Tre and starch contents and decreased the glucose (Glu) level under salt-stress conditions. Additionally, the TPS and TPP activities were enhanced by GR24 and the activity of THL was inhibited by GR24 under salt stress; thereafter, Tre biosynthesis-related genes, including TPS1, TPS2, TPP1, and TPP2, were also upregulated by GR24 under salt stress. However, the function of GR24 in Tre metabolism was inhibited by TIS108. Thus, the results indicated that GR24 improved the expression levels or activities of Tre biosynthesis-related genes or enzymes and inhibited the transcript level or activity of genes or enzymes related to Tre degradation, respectively, resulting in an increase in the endogenous Tre level and, therefore, weakening the salt toxicity of tomato seedlings.
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- 2023
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36. Role of Nitric Oxide in Postharvest Senescence of Fruits
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Changxia Li, Wenjin Yu, and Weibiao Liao
- Subjects
Organic Chemistry ,General Medicine ,Hydrogen Peroxide ,Ethylenes ,Nitric Oxide ,Catalysis ,Antioxidants ,Computer Science Applications ,Inorganic Chemistry ,Fruit ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Plant Proteins - Abstract
Nitric oxide (NO) acts as a gaseous signalling molecule and is considered to be a key regulator in the postharvest storage of fruits. Postharvest senescence is one of the most serious threats affecting the usage and economic value of fruits. Most recent studies have found that exogenous NO application can effectively improve the quality and prolong the shelf life of fruit postharvest by inhibiting postharvest diseases and alleviating chilling injury. Understanding the roles of NO is essential to elucidating how NO activates the appropriate set of responses to postharvest senescence. Here, we concluded that exogenous NO treatment alleviated senescence in postharvest fruit and attributed this to the following factors: (1) ethylene biosynthesis, (2) the antioxidant system, (3) polyamine metabolism and γ-aminobutyric acid (GABA) shunting, (4) cell wall metabolism, (5) sugar metabolism, (6) energy metabolism, (7) the CRT/DRE-binding factor (CBF) pathway and (8) S-nitrosylation. Moreover, crosstalk between NO and hydrogen sulfide (H2S), hydrogen peroxide (H2O2), oxalic acid (OA), arginine (Arg), GATA or plant hormone abscisic acid (ABA), melatonin (MT), and methyl jasmonate (MeJA), along with the regulation of key genes, were found to be very important in responses to postharvest senescence. In this study, we focus on the recent knowledge concerning the alleviative effect of NO on postharvest senescence, covering ethylene biosynthesis, the antioxidant system and related gene and protein expression.
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- 2022
37. Fine mapping and identification of SmAPRR2 regulating rind color in eggplant (Solanum melongena L.)
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Huarong Fang, Peng Wang, Jiechun Peng, Shishi Huang, Qingwei Jiang, Jieming Zheng, Wanhao Wang, Chuan Zhong, and Wenjin Yu
- Abstract
Rind color is an economically important agronomic trait in eggplant that impacts consumer preferences. However, the gene(s) regulating eggplant rind color have not been characterized. In this study, bulked segregant analysis (BSA) and kompetitive allele-specific PCR (KASP) were employed to identify a candidate gene for eggplant rind color through constructing an F2 population generated from a cross between 'BL01' (green pericarp) and 'B1' (white pericarp). Genetic analysis of rind color revealed that a single dominant gene controls green color of eggplant peel. Pigment content measurement and cytological observations demonstrated that chlorophyll and carotenoid content and the number of chloroplasts and thylakoids in BL01 were higher than in B1. Using a BSA-seq method and a recombinant mapping strategy in F2 plants, a candidate gene (EGP19168.1) was fine-mapped to a 20.36 Kb interval on chromosome 8. The gene is predicted to encode the two-component response regulator-like protein Arabidopsis pseudo-response regulator2 (APRR2). Subsequently, allelic sequence analysis revealed that a single-base deletion in white-skinned eggplant led to a premature termination codon. A credible molecular marker closely linked to the candidate gene was developed to genotype 45 diverse eggplant germplasms, which could predict the trait of rind color (green and white) with a 91.1% accuracy rate. This study will be valuable for molecular marker-assisted selection in eggplant breeding and provides theoretical foundation for analyzing the formation mechanism of eggplant peel color.
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- 2022
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38. High-density genetic map and quantitative trait loci map of fruit-related traits in wax gourd (Benincasa hispida)
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Liwen Su, Jiquan Gou, Haixuan Lv, Zhikui Cheng, Lianlian Ma, Xiaochun Huang, Wenting Wu, Wenjin Yu, Peng Wang, and Zhengguo Liu
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Genetics ,Plant Science ,Horticulture ,Agronomy and Crop Science - Published
- 2022
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39. Fine Mapping and Functional Analysis of Major Regulatory Genes of Soluble Solids Content in Wax Gourd (Benincasa hispida)
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Wenting Wu, Peng Wang, Xiaochun Huang, Liwen Su, Haixuan Lv, Jiquan Gou, Zhikui Cheng, Lianlian Ma, Wenjin Yu, and Zhengguo Liu
- Subjects
Inorganic Chemistry ,Organic Chemistry ,wax gourd ,soluble solids content ,BSA ,QTL ,NADP-dependent malic enzyme ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Soluble solids content (SSC) is an important quality trait of wax gourd, but reports about its regulatory genes are scarce. In this study, the SSC regulatory gene BhSSC2.1 in wax gourd was mined via quantitative trait locus (QTL) mapping based on high-density genetic mapping containing 12 linkage groups (LG) and bulked segregant analysis (BSA)-seq. QTL mapping and BSA-seq revealed for the first time that the SSC QTL (107.658–108.176 cM) of wax gourd was on Chr2 (LG2). The interpretable phenotypic variation rate and maximum LOD were 16.033% and 6.454, respectively. The QTL interval contained 13 genes. Real-time fluorescence quantitative expression analysis, functional annotation, and sequence analysis suggested that Bch02G016960, named BhSSC2.1, was a candidate regulatory gene of the SSC in wax gourd. Functional annotation of this gene showed that it codes for a NADP-dependent malic enzyme. According to BhSSC2.1 sequence variation, an InDel marker was developed for molecular marker-assisted breeding of wax gourd. This study will lay the foundation for future studies regarding breeding and understanding genetic mechanisms of wax gourd.
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- 2022
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40. Tracking the enzyme-response mechanism of tannic acid-embedded chitosan/γ-polyglutamic acid hydrogel
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Zhenxing Han, Mengmeng Wang, Ziwei Hu, Yu Wang, Jie Tong, Xiaofeng Zhao, Wenjin Yue, and Guangjun Nie
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Abstract The design of enzyme-response hydrogels has attracted increasing interest in cell therapy, biomedical research, and tissue engineering. Their rational design usually depends on the enzyme-response mechanism and have focused on behavior improvement, drug delivery, and state transition of hydrogels. However, no enzyme-response mechanism has yet been systematically investigated. Here, we construct a tunable platform of tannic acid-embedded chitosan/γ-polyglutamic acid hydrogel to study the enzyme-response mechanism. We track the roles of gallic acid hydrolyzed from tannic acid in altering the structure and properties of the hydrogel to get insights into the mechanism. The gallic acid inside the hydrogel enhances hydrogel crosslinking, increasing the mechanical properties and pH sensitivity but reducing thickness, porosity, and swelling behavior. The gallic acid outside the hydrogel increases the positive potential and superficial hydrophobicity of the hydrogel. These findings will aid the rational design of other enzyme-response hydrogels in more extensive self-adaptive fields.
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- 2024
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41. Involvement of Nitric Oxide and Melatonin Enhances Cadmium Resistance of Tomato Seedlings through Regulation of the Ascorbate–Glutathione Cycle and ROS Metabolism
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Junrong Xu, Zhien Wei, Xuefang Lu, Yunzhi Liu, Wenjin Yu, and Changxia Li
- Subjects
Inorganic Chemistry ,nitric oxide ,melatonin ,Cd stress ,AsA-GSH cycle ,regulator pathway ,gene expression ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Melatonin (MT) and nitric oxide (NO) act as signaling molecules that can enhance cadmium (Cd) stress resistance in plants. However, little information is available about the relationship between MT and NO during seedling growth under Cd stress. We hypothesize that NO may be involved in how MT responds to Cd stress during seedling growth. The aim of this study is to evaluate the relationship and mechanism of response. The results indicate that different concentrations of Cd inhibit the growth of tomato seedlings. Exogenous MT or NO promotes seedling growth under Cd stress, with a maximal biological response at 100 μM MT or NO. The promotive effects of MT-induced seedling growth under Cd stress are suppressed by NO scavenger 2-4-carboxyphenyl-4,4,5,5-tetramethyl-imidazoline-1-oxyl-3-oxide (cPTIO), suggesting that NO may be involved in MT-induced seedling growth under Cd stress. MT or NO decreases the content of hydrogen peroxide (H2O2), malonaldehyde (MDA), dehydroascorbic acid (DHA), and oxidized glutathione (GSSG); improves the content of ascorbic acid (AsA) and glutathione (GSH) and the ratios of AsA/DHA and GSH/GSSG; and enhances the activities of glutathione reductase (GR), monodehydroascorbic acid reductase (MDHAR), dehydroascorbic acid reductase (DHAR), ascorbic acid oxidase (AAO), and ascorbate peroxidase (APX) to alleviate oxidative damage. Moreover, the expression of genes associated with the ascorbate–glutathione (AsA-GSH) cycle and reactive oxygen species (ROS) are up-regulated by MT or NO under Cd conditions, including AAO, AAOH, APX1, APX6, DHAR1, DHAR2, MDHAR, and GR. However, NO scavenger cPTIO reverses the positive effects regulated by MT. The results indicate that MT-mediated NO enhances Cd tolerance by regulating AsA-GSH cycle and ROS metabolism.
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- 2023
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42. Strategies to improve the external quantum efficiency of perovskite light-emitting diode
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Lixin Xiao, Wenjin Yu, Yuqing Zhang, Bo Qu, and Zhijian Chen
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Multidisciplinary ,Photoluminescence ,Materials science ,Passivation ,business.industry ,Exciton ,Quantum yield ,law.invention ,law ,Optoelectronics ,Quantum efficiency ,Light emission ,business ,Perovskite (structure) ,Light-emitting diode - Abstract
Metal halide perovskite (MHP) has the potential to become the core luminescent material for the next generation of display and lighting equipment due to its excellent photoelectric properties and solution processible. Its unique crystal structure and flexible elemental composition enable it to have adjustable high-color-purity ultra-wide color gamut and bipolar ultra-fast mobility. As early as the 1990s, researchers attempted to prepare perovskite light-emitting diode (PeLED) using layered MHP as the light-emitting material. However, due to the immature membrane forming method and device structure, the device can only light up normally at 110 K. In 2014, Snaith et al first realized PeLED devices that were normally lit at room temperature. After nearly 5 years’ development, the external quantum efficiency (EQE) of PeLED has been significantly improved, from 0.76% to 20.7% for near-infrared devices and from 0.1% to 20.31% for green devices. At the same time, the highest EQEs for sky-blue devices and blue devices are 12.1% and 9.5%, respectively. In this paper, the factors limiting device EQE are analyzed in principle. The limitation of device EQE can be considered from four factors: Transition selection factor χ , charge balance factor η r, optical coupling factor η out and photoluminescence quantum yield φ PL. The photoluminescence quantum yield of perovskite layer is the key factor to determine device EQE, while the charge balance factor and the light coupling factor are the important factors to further improve device EQE. The transition selective factor of perovskite is generally considered to be 100%, which means that both triplet and singlet states of perovskite materials are involved in luminescence. The charge balance factor mainly depends on the choice of electron transport material and hole transport material in the device structure, while the optical coupling factor depends on the morphology of the device film and the external light emission structure in the device. Last but not the least, the photoluminescence quantum yield depends on the type of perovskite material, film quality, and defect passivation. This paper summarizes the strategies reported in the literature to improve EQE of devices from two aspects of “improving the photoluminescence quantum yield of perovskite luminescence layer” and “adjusting device structure to enhance the charge balance factor and the light coupling factor”. In order to obtain the devices with high photoluminescence quantum yield, we first need to prepare high quality perovskite film. On this basis, researchers try to reduce the grain size to reduce the quenching of the excited state at the interface between the transport layers and the perovskite emitting layer. In addition, dimensionality control is a special method to reduce grain size, and has both size effect and funneling effect to change the dominant behavior of radiation recombination in the perovskite emitting layer, from free carriers dominant to exciton dominant. Finally, defect passivation is of great significance to further improve the photoluminescence quantum yield. In addition, this paper also points out the core issues that need to be addressed urgently and the future direction of this region. Blue PeLED that meets the BT2020 standard and the improvement of device lifetime will become the core topics in the future. The development of lead-free perovskite luminescent materials is the only way for PeLED to be commercialized, and will become one of the directions of researchers’ efforts. And exploring high-efficiency white emitting devices under high brightness will become another core topic of this region.
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- 2021
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43. Construction of an Assisted Model Based on Natural Language Processing for Automatic Early Diagnosis of Autoimmune Encephalitis
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Yunsong Zhao, Bin Ren, Wenjin Yu, Haijun Zhang, Di Zhao, Junchao Lv, Zhen Xie, Kun Jiang, Lei Shang, Han Yao, Yongyong Xu, and Gang Zhao
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Neurology ,Neurology (clinical) - Abstract
Early diagnosis and etiological treatment can effectively improve the prognosis of patients with autoimmune encephalitis (AE). However, anti-neuronal antibody tests which provide the definitive diagnosis require time and are not always abnormal. By using natural language processing (NLP) technology, our study proposes an assisted diagnostic method for early clinical diagnosis of AE and compares its sensitivity with that of previously established criteria.Our model is based on the text classification model trained by the history of present illness (HPI) in electronic medical records (EMRs) that present a definite pathological diagnosis of AE or infectious encephalitis (IE). The definitive diagnosis of IE was based on the results of traditional etiological examinations. The definitive diagnosis of AE was based on the results of neuronal antibodies, and the diagnostic criteria of definite autoimmune limbic encephalitis proposed by Graus et al. used as the reference standard for antibody-negative AE. First, we automatically recognized and extracted symptoms for all HPI texts in EMRs by training a dataset of 552 cases. Second, four text classification models trained by a dataset of 199 cases were established for differential diagnosis of AE and IE based on a post-structuring text dataset of every HPI, which was completed using symptoms in English language after the process of normalization of synonyms. The optimal model was identified by evaluating and comparing the performance of the four models. Finally, combined with three typical symptoms and the results of standard paraclinical tests such as cerebrospinal fluid (CSF), magnetic resonance imaging (MRI), or electroencephalogram (EEG) proposed from Graus criteria, an assisted early diagnostic model for AE was established on the basis of the text classification model with the best performance.The comparison results for the four models applied to the independent testing dataset showed the naïve Bayesian classifier with bag of words achieved the best performance, with an area under the receiver operating characteristic curve of 0.85, accuracy of 84.5% (95% confidence interval [CI] 74.0-92.0%), sensitivity of 86.7% (95% CI 69.3-96.2%), and specificity of 82.9% (95% CI 67.9-92.8%), respectively. Compared with the diagnostic criteria proposed previously, the early diagnostic sensitivity for possible AE using the assisted diagnostic model based on the independent testing dataset was improved from 73.3% (95% CI 54.1-87.7%) to 86.7% (95% CI 69.3-96.2%).The assisted diagnostic model could effectively increase the early diagnostic sensitivity for AE compared to previous diagnostic criteria, assist physicians in establishing the diagnosis of AE automatically after inputting the HPI and the results of standard paraclinical tests according to their narrative habits for describing symptoms, avoiding misdiagnosis and allowing for prompt initiation of specific treatment.
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- 2022
44. Anthocyanin Biosynthesis Induced by MYB Transcription Factors in Plants
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Changxia Li, Wenjin Yu, Junrong Xu, Xuefang Lu, and Yunzhi Liu
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Cytokinins ,Organic Chemistry ,General Medicine ,Plants ,Plants, Genetically Modified ,Antioxidants ,Catalysis ,Computer Science Applications ,Anthocyanins ,Inorganic Chemistry ,Gene Expression Regulation, Plant ,Basic Helix-Loop-Helix Transcription Factors ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Plant Proteins ,Transcription Factors - Abstract
Anthocyanins act as polyphenolic pigment that is ubiquitously found in plants. Anthocyanins play a role not only in health-promoting as an antioxidant, but also in protection against all kinds of abiotic and biotic stresses. Most recent studies have found that MYB transcription factors (MYB TFs) could positively or negatively regulate anthocyanin biosynthesis. Understanding the roles of MYB TFs is essential in elucidating how MYB TFs regulate the accumulation of anthocyanin. In the review, we summarized the signaling pathways medicated by MYB TFs during anthocyanin biosynthesis including jasmonic acid (JA) signaling pathway, cytokinins (CKs) signaling pathway, temperature-induced, light signal, 26S proteasome pathway, NAC TFs, and bHLH TFs. Moreover, structural and regulator genes induced by MYB TFs, target genes bound and activated or suppressed by MYB TFs, and crosstalk between MYB TFs and other proteins, were found to be vitally important in the regulation of anthocyanin biosynthesis. In this study, we focus on the recent knowledge concerning the regulator signaling and mechanism of MYB TFs on anthocyanin biosynthesis, covering the signaling pathway, genes expression, and target genes and protein expression.
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- 2022
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45. Fine Mapping and Identification of the Candidate Gene BFS for Fruit Shape in Wax Gourd (Benincasa Hispida)
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Peng Wang, Chen Yong, Zhengguo Liu, Wenting Wu, Zhikui Cheng, Yuanchao Xu, Liwen Su, Lianlian Ma, Wenjin Yu, Jiquan Gou, and Jieying Chen
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Candidate gene ,Genotype ,Protein family ,Sequence analysis ,DNA Mutational Analysis ,Ovary (botany) ,Cleaved amplified polymorphic sequence ,Genetics ,Amino Acid Sequence ,Alleles ,Plant Proteins ,Wax ,biology ,Bulked segregant analysis ,Chromosome Mapping ,General Medicine ,biology.organism_classification ,Cucurbitaceae ,Horticulture ,Phenotype ,Fruit ,visual_art ,visual_art.visual_art_medium ,Gourd ,Agronomy and Crop Science ,Biotechnology - Abstract
Fruit shape is an important agronomic trait in wax gourds [Benincasa hispida (Thunb) Cogn.]. However, the candidate genes for this important trait, and their genetic mechanisms, remain unknown. In this study, we identified a candidate gene for fruit shape in wax gourds using a next-generation sequencing-based bulked segregant analysis in F2 populations derived from a cross between GX-71 (long cylindrical fruit, FSI = 4.56) and MY-1 (round fruit, FSI = 1.06) genotypes. According to bulked segregant analysis, the candidate gene is located in the 17.18 Mb region on chromosome 2, and the kompetitive allele specific polymerase chain reaction (KASP) marker was used to reduce it to the 19.6 Kb region. There is only one gene in the corresponding region of the reference genome, Bch02G016830 (designated BFS). We sequenced BFS in six wax gourd varieties with different fruit shapes. Sequence analysis showed that there were two non-synonymous mutations in the spherical wax gourd and one non-synonymous mutation in the cylindrical wax gourd. Quantitative real‑time polymerase chain reaction (qRT-PCR) analysis showed that the expression of BFS in round fruits was significantly higher than in long cylindrical fruits at the ovary formation stage. Therefore, BFS is a candidate gene for determination of the fruit shape of wax gourds. The predicted protein encoded by the BFS gene belongs to the IQD protein family, which have the structural characteristics of scaffold proteins and coordinate Ca2+ CaM signaling from the membrane to the nucleus. The BFS gene can assist with the breeding of new varieties that possess ideal fruit shapes.
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- 2021
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46. The Global Infectious Diseases Epidemic Information Monitoring System: Development and Usability Study of an Effective Tool for Travel Health Management in China
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Ying Ye, Dong Ruiling, Xiaopeng Yuan, Xin Shi, Qun Su, Jianan He, Dayong Gu, Wenjin Yu, Xiangjun Wang, Jie Sun, and Zishuai Zhang
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medicine.medical_specialty ,China ,infectious disease ,030231 tropical medicine ,Internet privacy ,Health Informatics ,Disease ,epidemic information ,Safeguarding ,Global Health ,Communicable Diseases ,law.invention ,travel health ,03 medical and health sciences ,0302 clinical medicine ,law ,Quarantine ,medicine ,Humans ,030212 general & internal medicine ,Epidemics ,Original Paper ,Health management system ,business.industry ,Public health ,Public Health, Environmental and Occupational Health ,Outbreak ,global ,Infectious disease (medical specialty) ,Communicable Disease Control ,Epidemiological Monitoring ,surveillance ,Business ,Public aspects of medicine ,RA1-1270 ,Travel-Related Illness ,Information Systems - Abstract
BackgroundObtaining comprehensive epidemic information for specific global infectious diseases is crucial to travel health. However, different infectious disease information websites may have different purposes, which may lead to misunderstanding by travelers and travel health staff when making accurate epidemic control and management decisions.ObjectiveThe objective of this study was to develop a Global Infectious Diseases Epidemic Information Monitoring System (GIDEIMS) in order to provide comprehensive and timely global epidemic information.MethodsDistributed web crawler and cloud agent acceleration technologies were used to automatically collect epidemic information about more than 200 infectious diseases from 26 established epidemic websites and Baidu News. Natural language processing and in-depth learning technologies have been utilized to intelligently process epidemic information collected in 28 languages. Currently, the GIDEIMS presents world epidemic information using a geographical map, including date, disease name, reported cases in different countries, and the epidemic situation in China. In order to make a practical assessment of the GIDEIMS, we compared infectious disease data collected from the GIDEIMS and other websites on July 16, 2019.ResultsCompared with the Global Incident Map and Outbreak News Today, the GIDEIMS provided more comprehensive information on human infectious diseases. The GIDEIMS is currently used in the Health Quarantine Department of Shenzhen Customs District (Shenzhen, China) and was recommended to the Health Quarantine Administrative Department of the General Administration of Customs (China) and travel health–related departments.ConclusionsThe GIDEIMS is one of the most intelligent tools that contributes to safeguarding the health of travelers, controlling infectious disease epidemics, and effectively managing public health in China.
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- 2021
47. The Global Infectious Diseases Epidemic Information Monitoring System: Development and Usability Study of an Effective Tool for Travel Health Management in China (Preprint)
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Dayong Gu, Jianan He, Jie Sun, Xin Shi, Ying Ye, Zishuai Zhang, Xiangjun Wang, Qun Su, Wenjin Yu, Xiaopeng Yuan, and Ruiling Dong
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BACKGROUND Obtaining comprehensive epidemic information for specific global infectious diseases is crucial to travel health. However, different infectious disease information websites may have different purposes, which may lead to misunderstanding by travelers and travel health staff when making accurate epidemic control and management decisions. OBJECTIVE The objective of this study was to develop a Global Infectious Diseases Epidemic Information Monitoring System (GIDEIMS) in order to provide comprehensive and timely global epidemic information. METHODS Distributed web crawler and cloud agent acceleration technologies were used to automatically collect epidemic information about more than 200 infectious diseases from 26 established epidemic websites and Baidu News. Natural language processing and in-depth learning technologies have been utilized to intelligently process epidemic information collected in 28 languages. Currently, the GIDEIMS presents world epidemic information using a geographical map, including date, disease name, reported cases in different countries, and the epidemic situation in China. In order to make a practical assessment of the GIDEIMS, we compared infectious disease data collected from the GIDEIMS and other websites on July 16, 2019. RESULTS Compared with the Global Incident Map and Outbreak News Today, the GIDEIMS provided more comprehensive information on human infectious diseases. The GIDEIMS is currently used in the Health Quarantine Department of Shenzhen Customs District (Shenzhen, China) and was recommended to the Health Quarantine Administrative Department of the General Administration of Customs (China) and travel health–related departments. CONCLUSIONS The GIDEIMS is one of the most intelligent tools that contributes to safeguarding the health of travelers, controlling infectious disease epidemics, and effectively managing public health in China.
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- 2020
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48. A Real-World Study Comparing Various Antimicrobial Regimens for Bloodstream Infections Caused by Carbapenem-Resistant Gram-Negative Bacilli in a Tertiary Hospital, Shanghai, China, from 2010 to 2017
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Weixia Peng, Qianyi Xiao, Hechen Zhu, Jiaying Tan, Gang Wu, Wenjin Yu, Ye Gong, Jun Shen, Yukun Lan, and Yong Fang
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0301 basic medicine ,medicine.medical_specialty ,real-world ,Combination therapy ,medicine.drug_class ,030106 microbiology ,Antibiotics ,bloodstream infection ,antimicrobial regimen ,treatment success rate ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Medicine ,Pharmacology (medical) ,030212 general & internal medicine ,Original Research ,Pharmacology ,carbapenem-resistant gram-negative bacilli ,Chinese population ,business.industry ,Septic shock ,Medical record ,Therapeutic effect ,Retrospective cohort study ,medicine.disease ,Antimicrobial ,Infectious Diseases ,Infection and Drug Resistance ,business - Abstract
Jiaying Tan,1,* Wenjin Yu,2,* Gang Wu,1 Jun Shen,1 Yong Fang,1 Hechen Zhu,1 Qianyi Xiao,3 Weixia Peng,3 Yukun Lan,3 Ye Gong1 1Department of Critical Care Medicine, Huashan Hospital, Fudan University, Shanghai 200040, People’s Republic of China; 2Department of Pharmacy , Huashan Hospital, Fudan University, Shanghai 200040, People’s Republic of China; 3Department of Preventive Medicine and Health Education, School of Public Health, Fudan University, Shanghai 200032, People’s Republic of China*These authors contributed equally to this workCorrespondence: Ye Gong Email gong_ye@fudan.edu.cnBackground: We conducted a real-world analysis of the effectiveness of different antibiotic regimens for bloodstream infections (BSIs) caused by carbapenem-resistant gram-negative bacilli (CR-GNB) in a Chinese population.Methods: A retrospective observational study was conducted between January 2010 and December 2017. Patients with BSIs caused by CR-GNB confirmed by in vitro susceptibility tests were enrolled, and patient medical record data on antimicrobial agents and microbiological and clinical outcomes were extracted.Results: A total of 175 individuals were included; 127 individuals (72.6%) received combination therapy (two or more antibiotics), while 48 individuals (27.4%) received monotherapy (single antibiotic). The all-cause 28-day mortality was 20.0%. Treatment success or presumed success rates were very similar between the monotherapy and combination therapy groups (58.3% versus 59.1%; P = 0.931). Combination therapy had a higher success rate trend than monotherapy in septic shock patients (40.7% versus 18.2%; P = 0.268). Improved therapeutic effects were observed in the active agent-containing group, although the differences were not significant.Conclusion: Combination therapy likely has better therapeutic effects on critical BSIs caused by CR-GNB than monotherapy. Choosing a proper active agent in an antimicrobial regime is relatively crucial to the ultimate treatment outcome.Keywords: bloodstream infection, carbapenem-resistant gram-negative bacilli, antimicrobial regimen, treatment success rate, real-world, Chinese population
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- 2020
49. Weighted Gene Co-Expression Analysis Network-Based Analysis on the Candidate Pathways and Hub Genes in Eggplant Bacterial Wilt-Resistance: A Plant Research Study
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Jiechun Peng, Peng Wang, Huarong Fang, Jieming Zheng, Chuan Zhong, Yanjuan Yang, and Wenjin Yu
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QH301-705.5 ,MAP Kinase Signaling System ,eggplant ,bacterial wilt-resistance ,pathways ,Article ,Catalysis ,Inorganic Chemistry ,VIGS ,Gene Expression Regulation, Plant ,weighted gene co-expression analysis network ,hub genes ,RNA-Seq ,Solanum melongena ,Biology (General) ,Physical and Theoretical Chemistry ,QD1-999 ,Molecular Biology ,Spectroscopy ,Disease Resistance ,Plant Diseases ,Organic Chemistry ,food and beverages ,General Medicine ,Glutathione ,Computer Science Applications ,Chemistry ,Host-Pathogen Interactions ,Ralstonia solanacearum - Abstract
Solanum melongena L. (eggplant) bacterial wilt is a severe soil borne disease. Here, this study aimed to explore the regulation mechanism of eggplant bacterial wilt-resistance by transcriptomics with weighted gene co-expression analysis network (WGCNA). The different expression genes (DEGs) of roots and stems were divided into 21 modules. The module of interest (root: indianred4, stem: coral3) with the highest correlation with the target traits was selected to elucidate resistance genes and pathways. The selected module of roots and stems co-enriched the pathways of MAPK signalling pathway, plant pathogen interaction, and glutathione metabolism. Each top 30 hub genes of the roots and stems co-enriched a large number of receptor kinase genes. A total of 14 interesting resistance-related genes were selected and verified with quantitative polymerase chain reaction (qPCR). The qPCR results were consistent with those of WGCNA. The hub gene of EGP00814 (namely SmRPP13L4) was further functionally verified; SmRPP13L4 positively regulated the resistance of eggplant to bacterial wilt by qPCR and virus-induced gene silencing (VIGS). Our study provides a reference for the interaction between eggplants and bacterial wilt and the breeding of broad-spectrum and specific eggplant varieties that are bacterial wilt-resistant.
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- 2021
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50. Lead‐free Double Perovskite Cs 2 AgIn 0.9 Bi 0.1 Cl 6 Quantum Dots for White Light‐Emitting Diodes
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Zhijian Chen, Shufeng Wang, Zehao Zhang, Yuqing Zhang, Bo Qu, Wenjin Yu, Xuan Guo, Lixin Xiao, Yong He, and Jun-jie Shi
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Materials science ,Passivation ,Science ,General Chemical Engineering ,General Physics and Astronomy ,Medicine (miscellaneous) ,quantum dots ,Phosphor ,Color temperature ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,electrically excited ,General Materials Science ,Research Articles ,Diode ,Perovskite (structure) ,business.industry ,General Engineering ,Quantum dot ,Optoelectronics ,Direct and indirect band gaps ,white light‐emitting diodes ,double perovskites ,lead‐free ,Luminescence ,business ,Research Article - Abstract
Perovskite‐based optoelectronic devices have attracted considerable attention owing to their excellent device performances and facile solution processing. However, the toxicity and intrinsic instability of lead‐based perovskites have limited their commercial development. Moreover, the provision of an efficient white emission from a single perovskite layer is challenging. Here, novel electrically excited white light‐emitting diodes (WLEDs) based on lead‐free double perovskite Cs2AgIn0.9Bi0.1Cl6 quantum dots (QDs) without any phosphor are fabricated for the first time. Density functional theory calculations are carried out to clarify the mechanism of absorption and recombination in Cs2AgIn0.9Bi0.1Cl6 with Bi‐doping breaking the parity‐forbidden transition of the direct bandgap. Microzone optical and electronic characterizations reveal that the broadband emission of Cs2AgIn0.9Bi0.1Cl6 QDs originates from self‐trapped excitons, and luminescent properties are unchanged after the film deposition. The QD‐WLED exhibits excellent Commission Internationale de L'Eclairage color coordinates, correlated color temperature and relatively high color rendering index of (0.32, 0.32), 6432 K, and 94.5, respectively. The maximum luminance of 158 cd m−2 is achieved by triphenylphosphine oxide passivation, and this lead‐free QD‐WLED exhibits a superior stability in ambient air with a long T 50 ≈48.53 min. Therefore, lead‐free perovskite Cs2AgIn0.9Bi0.1Cl6 QDs are promising candidates for use in WLEDs in the future., Neatly structured lead‐free double perovskite Cs2AgIn0.9Bi0.1Cl6 QDs with a photoluminescence quantum yield (PLQY) of 31.4% are synthesized through hot‐injection method. The electrically excited white light‐emitting diodes (WLEDs) based on Cs2AgIn0.9Bi0.1Cl6 QDs are fabricated for the first time, exhibiting excellent Commission Internationale de L'Eclairage (CIE) color coordinates, correlated color temperature, and a relatively high color rendering index of (0.32, 0.32), 6432 K, and 94.5, respectively.
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- 2021
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