38 results on '"Ying-Li Liu"'
Search Results
2. Fructose promotes ampicillin killing of antibiotic-resistant Streptococcus agalactiae
- Author
-
Xuan-Wei Chen, Jia-Han Wu, Ying-Li Liu, Hetron Mweemba Munang’andu, and Bo Peng
- Subjects
Streptococcus agalactiae ,ampicillin ,fructose ,glycolysis ,metabolism ,Infectious and parasitic diseases ,RC109-216 - Abstract
ABSTRACTStreptococcus agalactiae (GBS) is an important pathogenic bacteria that infected both aquatic animals and human beings, causing huge economic loss. The increasing cases of antibiotic-resistant GBS impose challenges to treat such infection by antibiotics. Thus, it is highly demanded for the approach to tackle antibiotic resistance in GBS. In this study, we adopt a metabolomic approach to identify the metabolic signature of ampicillin-resistant GBS (AR-GBS) that ampicillin is the routine choice to treat infection by GBS. We find glycolysis is significantly repressed in AR-GBS, and fructose is the crucial biomarker. Exogenous fructose not only reverses ampicillin resistance in AR-GBS but also in clinic isolates including methicillin-resistant Staphylococcus aureus (MRSA) and NDM-1 expressing Escherichia coli. The synergistic effect is confirmed in a zebrafish infection model. Furthermore, we demonstrate that the potentiation by fructose is dependent on glycolysis that enhances ampicillin uptake and the expression of penicillin-binding proteins, the ampicillin target. Our study demonstrates a novel approach to combat antibiotic resistance in GBS.
- Published
- 2023
- Full Text
- View/download PDF
3. A method for analyzing programmed cell death in xylem development by flow cytometry
- Author
-
Ying-Li Liu, Ying-Hua Guo, Xue-Qin Song, Meng-Xuan Hu, and Shu-Tang Zhao
- Subjects
PCD ,xylem development ,FACS ,gene expression ,woody plants ,Plant culture ,SB1-1110 - Abstract
Programmed cell death (PCD) is a genetically regulated developmental process leading to the death of specific types of plant cells, which plays important roles in plant development and growth such as wood formation. However, an efficient method needs to be established to study PCD in woody plants. Flow cytometry is widely utilized to evaluate apoptosis in mammalian cells, while it is rarely used to detect PCD in plants, especially in woody plants. Here, we reported that the xylem cell protoplasts from poplar stem were stained with a combination of fluorescein annexin V-FITC and propidium iodide (PI) and then sorted by flow cytometry. As expected, living cells (annexin V-FITC negative/PI negative), early PCD cells (annexin V-FITC positive/PI negative), and late PCD cells (annexin V-FITC positive/PI positive) could be finely distinguished through this method and then subjected for quantitative analysis. The expression of cell-type- and developmental stages-specific marker genes was consistent with the cell morphological observation. Therefore, the newly developed fluorescence-activated cell sorting (FACS) method can be used to study PCD in woody plants, which will be beneficial for studying the molecular mechanisms of wood formation.
- Published
- 2023
- Full Text
- View/download PDF
4. The Impact of Hypertension Definition Based on Two-visit Strategy on Estimate of Hypertension Burden: Results From the China Health and Nutrition Survey 1989–2011
- Author
-
Ying-Li Liu, Ying-Jun Mi, Bing Zhang, Hui-Jun Wang, Jie Yu, Xing-Bing Pan, Chao Wang, and Qing-Bao Tian
- Subjects
hypertension definition ,two-visit strategy ,hypertension burden ,chinese adults ,Medicine (General) ,R5-920 - Abstract
Background: The diagnosis of hypertension should be based on the mean of two or more properly measured BP readings on each of two visits for clinical practice, but a one-visit strategy was applied in most epidemiological surveys. The impact of hypertension definition based on two visits on estimates of hypertension burden is unknown. This study aims to assess the impact of hypertension diagnosis based on a two-visit strategy for estimating hypertension burden in China. Methods: The one-visit and two-visit strategies were applied to investigate the incidence of hypertension in a cohort study based on the China Health and Nutrition Survey (CHNS) 1989–2011. Additionally the prevalence of hypertension was investigated in a cross-sectional study based on the CHNS 2006–2009/2011 and the hypertension burden in China was estimated with data from the 2012–2015 China hypertension survey. Results: Overall, the age-adjusted incidence of hypertension based on the two-visit strategy (1.82%; 95% confidence interval [CI], 1.74–1.90%) was 62.1% lower than estimation based on the one-visit strategy (4.80%; 95% CI, 4.68–4.93%). Similar results were found in the prevalence of hypertension (one-visit: 18.13% [95% CI, 17.34–18.92%]; two-visit: 9.47% [95% CI, 8.87–10.07%]). When the two-visit strategy was applied to the 2012–2015 China hypertension survey, the hypertension burden was predicted to be overestimated by 25.5–47.8% (based on JNC 7) and 23.5–48.2% (based on the 2017 ACC/AHA). Conclusion: The hypertension burden would decrease from 244.5 million persons to 127.5–182.3 million persons in China if the two-visit strategy was applied.
- Published
- 2021
- Full Text
- View/download PDF
5. Plain Water Intake and Association With the Risk of Overweight in the Chinese Adult Population: China Health and Nutrition Survey 2006–2011
- Author
-
Xing-Bing Pan, Hui-Jun Wang, Bing Zhang, Ying-Li Liu, Su-Fen Qi, and Qing-Bao Tian
- Subjects
plain water ,overweight ,obesity ,dose–response ,chns ,Medicine (General) ,R5-920 - Abstract
Background: The prevalence of overweight is increasing dramatically worldwide. The aim of our study was to investigate the association of plain water intake (PWI) with the risk of new-onset overweight risk among Chinese adults. Methods: A total of 3,200 adults aged 18–65 who were free of overweight at baseline were enrolled from China Health and Nutrition Survey (CHNS) cohort study in 2006–2011. The risk of new-onset overweight with different amounts of PWI per day was analyzed in this 5-year cohort. A multiple logistic regression model was used to assess the association of PWI and the risk of new-onset overweight and adjust for potential confounders. Moreover, dose-response models were developed to estimate the linear relationship. Results: During 5 years of follow-up, 1,018 incident cases were identified. Our analysis indicated an inverse association of more than 4 cups of PWI per day and the risk of new-onset overweight among normal weight individuals. Compared with participants who drank 2 to 3 cups PWI, the adjusted odds ratios (OR) of overweight were 0.741 (95% confidence interval [CI], 0.599–0.916) in participants who drank 4 to 5 cups PWI, and 0.547 (95% CI, 0.435–0.687) in participants who drank more than 6 cups PWI. The dose-response analysis showed that every cup of PWI was associated with a 6.5% and 8.4% decrease in the risk of new-onset overweight among men and women, respectively. The interactions of PWI and covariates on the risk of overweight were not found. Conclusion: Drinking more than 4 cups (≈1 liter) per day of plain water is associated with decrease in the risk of new-onset overweight among normal-weight individuals.
- Published
- 2020
- Full Text
- View/download PDF
6. Identification of the Genetic Requirements for Zinc Tolerance and Toxicity in Saccharomyces cerevisiae
- Author
-
Yun-ying Zhao, Chun-lei Cao, Ying-li Liu, Jing Wang, Jie Li, Shi-yun Li, and Yu Deng
- Subjects
saccharomyces cerevisiae ,zinc toxicity ,genetic screening ,genomics ,reactive oxygen species (ros) ,Genetics ,QH426-470 - Published
- 2020
- Full Text
- View/download PDF
7. A Small Guanosine Triphosphate Binding Protein PagRabE1b Promotes Xylem Development in Poplar
- Author
-
Ying-Li Liu, Li-Juan Wang, Yu Li, Ying-Hua Guo, Yuan Cao, and Shu-Tang Zhao
- Subjects
poplar ,small gtp binding protein ,PagRabE1b ,cell wall ,wood formation ,Plant culture ,SB1-1110 - Abstract
Rab GTPases are the subfamily of the small guanosine triphosphate (GTP)-binding proteins which participated in the regulation of various biological processes. Recent studies have found that plant Rabs play some specific functions. However, the functions of Rabs in xylem development in trees remain unclear. In this study, functional identification of PagRabE1b in Populus was performed. Quantitative reverse transcription PCR (qRT-PCR) results showed that PagRabE1b was highly accumulated in stems, especially in phloem and xylem tissues. Overexpression of PagRabE1b in poplar enhanced programmed cell death (PCD) and increased the growth rate and the secondary cell wall (SCW) thickness. Quantitative analysis of monosaccharide content showed that various monosaccharides were significantly increased in secondary xylem tissues of the overexpressed lines. Flow cytometry analysis revealed that the number of apoptotic cells in PagRabE1b-OE lines is more than a wild type (WT), which indicated that PagRabE1b may play an important role in PCD. Further studies showed that overexpression of PagRabE1b increased the expression level of genes involved in SCW biosynthesis, PCD, and autophagy. Collectively, the results suggest that PagRabE1b plays a positive role in promoting the xylem development of poplar.
- Published
- 2021
- Full Text
- View/download PDF
8. Astragaloside IV Improves High-Fat Diet–Induced Hepatic Steatosis in Nonalcoholic Fatty Liver Disease Rats by Regulating Inflammatory Factors Level via TLR4/NF-κB Signaling Pathway
- Author
-
Ying-Li Liu, Qiu-Zan Zhang, Yan-Rong Wang, Li-Na Fu, Jing-Shu Han, Jing Zhang, and Bang-Mao Wang
- Subjects
astragaloside IV ,non-alcoholic fatty liver disease ,toll like receptor 4 ,nuclear factor-kappa B ,myeloid differentiation factor 88 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Objective: Astragaloside IV (AS-IV) is the primary bioactive component purified from Astragalus membranaceus which is one of the traditional Chinese medicines. Research studies found that AS-IV has significant pharmacological effects on focal cerebral ischemia/reperfusion, cardiovascular disease, pulmonary disease, liver cirrhosis, and diabetic nephropathy, but little is known about the effects of AS-IV on nonalcoholic fatty liver disease (NAFLD). In this study, we investigated whether AS-IV has beneficial effects on NAFLD in rats and its potential mechanisms.Methods: Male SD rats were fed with high-fat diet (HFD) for 12 weeks to establish NAFLD rat model, and then, the rats were divided into five groups. The control group rats were fed with normal diet for 12 weeks and then were given normal saline (1.0 ml kg−1 day−1) by intragastric administration for 4 weeks. The model group rats were fed with HFD for 12 weeks and then were given normal saline (1.0 ml kg−1 day−1) by intragastric administration for 4 weeks. The AS-IV-L, AS-IV-M, and AS-IV-H groups were treated with 20, 40, and 80 mg kg−1 day−1 of AS-IV by intragastric administration for 4 weeks and given HFD diet. Then, we detected serum transaminase (ALT, AST), blood lipid (TG, TC), inflammatory cytokines (IL-6, IL-8 and TNF-α), liver histology(NAFLD activity score), TLR4/MyD88 signaling pathway in liver tissue.Results: We found AS-IV significantly reduced serum levels of AST, ALT, TG, TNF-α, IL-6, and IL-8 in NAFLD rats and downregulate the expression of TLR4 mRNA, MyD88 mRNA, NF-κB mRNA, and proteins in liver tissue. Moreover, AS-IV could significantly reduce the NAFLD activity score of NAFLD rat liver.Conclusion: In this study, we demonstrated that AS-IV have a protective effect on NAFLD by inhibiting TNF-α, IL-6 and IL-8 levels and down-regulating TLR4, MyD88 and NF-κB expression in rat liver tissues.
- Published
- 2021
- Full Text
- View/download PDF
9. Cordyceps militaris Immunomodulatory Protein Promotes the Phagocytic Ability of Macrophages through the TLR4-NF-κB Pathway
- Author
-
Hong-Bo Fan, Yuan Zou, Qing Han, Qian-Wang Zheng, Ying-Li Liu, Li-Qiong Guo, and Jun-Fang Lin
- Subjects
Cordyceps militaris ,immunomodulatory protein ,macrophage ,phagocytosis ,immunity ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Enhancing the phagocytosis of immune cells with medicines provides benefits to the physiological balance by removing foreign pathogens and apoptotic cells. The fungal immunomodulatory protein (FIP) possessing various immunopotentiation functions may be a good candidate for such drugs. However, the effect and mechanism of FIP on the phagocytic activity is limitedly investigated. Therefore, the present study determined effects of Cordyceps militaris immunomodulatory protein (CMIMP), a novel FIP reported to induce cytokines secretion, on the phagocytosis using three different types of models, including microsphere, Escherichia Coli and Candida albicans. CMIMP not only significantly improved the phagocytic ability (p < 0.05), but also enhanced the bactericidal activity (p < 0.05). Meanwhile, the cell size, especially the cytoplasm size, was markedly increased by CMIMP (p < 0.01), accompanied by an increase in the F-actin expression (p < 0.001). Further experiments displayed that CMIMP-induced phagocytosis, cell size and F-actin expression were alleviated by the specific inhibitor of TLR4 (p < 0.05). Similar results were observed in the treatment with the inhibitor of the NF-κB pathway (p < 0.05). In conclusion, it could be speculated that CMIMP promoted the phagocytic ability of macrophages through increasing F-actin expression and cell size in a TLR4-NF-κB pathway dependent way.
- Published
- 2021
- Full Text
- View/download PDF
10. A Case of Podocytic Infolding Glomerulopathy with Primary Sjögren's Syndrome and Hashimoto's Thyroiditis
- Author
-
Jun-Yan Fang, A-Hui Song, Bo Shen, and Ying-Li Liu
- Subjects
Medicine - Published
- 2018
- Full Text
- View/download PDF
11. Secreted in a Type III Secretion System-Dependent Manner, EsaH and EscE Are the Cochaperones of the T3SS Needle Protein EsaG of Edwardsiella piscicida
- Author
-
Zhi Xiong Zeng, Lu Yi Liu, Shui Bing Xiao, Jin Fang Lu, Ying Li Liu, Jing Li, Yuan Ze Zhou, Li Jing Liao, Duan You Li, Ying Zhou, Pin Nie, and Hai Xia Xie
- Subjects
cochaperone ,secretion ,T3SS needle protein ,Edwardsiella piscicida ,Microbiology ,QR1-502 - Abstract
ABSTRACT The intracellular EscE protein tightly controls the secretion of the type III secretion system (T3SS) middle and late substrates in Edwardsiella piscicida. However, the regulation of secretion by EscE is incompletely understood. In this work, we reveal that EscE interacts with EsaH and EsaG. The crystal structures of the EscE-EsaH complex and EscE-EsaG-EsaH complex were resolved at resolutions of 1.4 Å and 1.8 Å, respectively. EscE and EsaH form a hydrophobic groove to engulf the C-terminal region of EsaG (56 to 73 amino acids [aa]), serving as the cochaperones of T3SS needle protein EsaG in E. piscicida. V61, K62, M64, and M65 of EsaG play a pivotal role in maintaining the conformation of the ternary complex of EscE-EsaG-EsaH, thereby maintaining the stability of EsaG. An in vivo experiment revealed that EscE and EsaH stabilize each other, and both of them stabilize EsaG. Meanwhile, either EscE or EsaH can be secreted through the T3SS. The secondary structure of EsaH lacks the fourth and fifth α helices presented in its homologs PscG, YscG, and AscG. Insertion of the α4 and α5 helices of PscG or swapping the N-terminal 25 aa of PscG with those of EsaH starkly decreases the protein level of the chimeric EsaH, resulting in instability of EsaG and deactivation of the T3SS. To the best of our knowledge, these data represent the first reported structure of the T3SS needle complex of pathogens from Enterobacteriaceae and the first evidence for the secretion of T3SS needle chaperones. IMPORTANCE Edwardsiella piscicida causes severe hemorrhagic septicemia in fish. Inactivation of the type III secretion system (T3SS) increases its 50% lethal dose (LD50) by ~10 times. The secretion of T3SS middle and late substrates in E. piscicida is tightly controlled by the intracellular steady-state protein level of EscE, but the mechanism is incompletely understood. In this study, EscE was found to interact with and stabilize EsaH in E. piscicida. The EscE-EsaH complex is structurally analogous to T3SS needle chaperones. Further study revealed that EscE and EsaH form a hydrophobic groove to engulf the C-terminal region of EsaG, serving as the cochaperones stabilizing the T3SS needle protein EsaG. Interestingly, both EscE and EsaH are secreted. Our study reveals that the EscE-EsaH complex controls T3SS protein secretion by stabilizing EsaG, whose secretion in turn leads to the secretion of the middle and late T3SS substrates.
- Published
- 2022
- Full Text
- View/download PDF
12. PagERF81 regulates lignin biosynthesis and xylem cell differentiation in poplar
- Author
-
Xin‐Wei Zhao, Qiao Wang, Dian Wang, Wei Guo, Meng‐Xuan Hu, Ying‐Li Liu, Gong‐Ke Zhou, Guo‐Hua Chai, Shu‐Tang Zhao, and Meng‐Zhu Lu
- Subjects
Plant Science ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology - Published
- 2023
13. The Impact of Hypertension Definition Based on Two-visit Strategy on Estimate of Hypertension Burden: Results From the China Health and Nutrition Survey 1989–2011
- Author
-
Huijun Wang, Ying-Li Liu, Chao Wang, Ying-Jun Mi, Xing-Bing Pan, Jie Yu, Bing Zhang, and Qing-Bao Tian
- Subjects
Adult ,Male ,medicine.medical_specialty ,China ,Adolescent ,Epidemiology ,Office Visits ,two-visit strategy ,030209 endocrinology & metabolism ,Blood Pressure ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,chinese adults ,Environmental health ,Cardiovascular Disease ,medicine ,Prevalence ,Nutrition survey ,Humans ,030212 general & internal medicine ,hypertension definition ,Hypertension diagnosis ,Aged ,Estimation ,lcsh:R5-920 ,business.industry ,Incidence (epidemiology) ,Incidence ,Blood Pressure Determination ,General Medicine ,hypertension burden ,Middle Aged ,Nutrition Surveys ,Health Surveys ,Confidence interval ,Cross-Sectional Studies ,Hypertension ,Original Article ,Female ,business ,lcsh:Medicine (General) ,Cohort study - Abstract
Background The diagnosis of hypertension should be based on the mean of two or more properly measured BP readings on each of two visits for clinical practice, but a one-visit strategy was applied in most epidemiological surveys. The impact of hypertension definition based on two visits on estimates of hypertension burden is unknown. This study aims to assess the impact of hypertension diagnosis based on a two-visit strategy for estimating hypertension burden in China. Methods The one-visit and two-visit strategies were applied to investigate the incidence of hypertension in a cohort study based on the China Health and Nutrition Survey (CHNS) 1989-2011. Additionally the prevalence of hypertension was investigated in a cross-sectional study based on the CHNS 2006-2009/2011 and the hypertension burden in China was estimated with data from the 2012-2015 China hypertension survey. Results Overall, the age-adjusted incidence of hypertension based on the two-visit strategy (1.82%; 95% confidence interval [CI], 1.74-1.90%) was 62.1% lower than estimation based on the one-visit strategy (4.80%; 95% CI, 4.68-4.93%). Similar results were found in the prevalence of hypertension (one-visit: 18.13% [95% CI, 17.34-18.92%]; two-visit: 9.47% [95% CI, 8.87-10.07%]). When the two-visit strategy was applied to the 2012-2015 China hypertension survey, the hypertension burden was predicted to be overestimated by 25.5-47.8% (based on JNC 7) and 23.5-48.2% (based on the 2017 ACC/AHA). Conclusion The hypertension burden would decrease from 244.5 million persons to 127.5-182.3 million persons in China if the two-visit strategy was applied.
- Published
- 2021
14. Plain Water Intake and Association With the Risk of Overweight in the Chinese Adult Population: China Health and Nutrition Survey 2006–2011
- Author
-
Su-Fen Qi, Ying-Li Liu, Huijun Wang, Xing-Bing Pan, Bing Zhang, and Qing-Bao Tian
- Subjects
Adult ,Male ,obesity ,China ,CHNS ,Adolescent ,Epidemiology ,Drinking ,030209 endocrinology & metabolism ,Overweight ,Risk Assessment ,Cohort Studies ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,plain water ,Medicine ,Humans ,030212 general & internal medicine ,Nutrition ,Aged ,lcsh:R5-920 ,business.industry ,Confounding ,Liter ,General Medicine ,Odds ratio ,Middle Aged ,medicine.disease ,Nutrition Surveys ,Obesity ,Confidence interval ,Cohort ,Original Article ,Female ,medicine.symptom ,dose–response ,business ,lcsh:Medicine (General) ,Demography ,Cohort study - Abstract
Background The prevalence of overweight is increasing dramatically worldwide. The aim of our study was to investigate the association of plain water intake (PWI) with the risk of new-onset overweight risk among Chinese adults. Methods A total of 3,200 adults aged 18-65 who were free of overweight at baseline were enrolled from China Health and Nutrition Survey (CHNS) cohort study in 2006-2011. The risk of new-onset overweight with different amounts of PWI per day was analyzed in this 5-year cohort. A multiple logistic regression model was used to assess the association of PWI and the risk of new-onset overweight and adjust for potential confounders. Moreover, dose-response models were developed to estimate the linear relationship. Results During 5 years of follow-up, 1,018 incident cases were identified. Our analysis indicated an inverse association of more than 4 cups of PWI per day and the risk of new-onset overweight among normal weight individuals. Compared with participants who drank 2 to 3 cups PWI, the adjusted odds ratios (OR) of overweight were 0.741 (95% confidence interval [CI], 0.599-0.916) in participants who drank 4 to 5 cups PWI, and 0.547 (95% CI, 0.435-0.687) in participants who drank more than 6 cups PWI. The dose-response analysis showed that every cup of PWI was associated with a 6.5% and 8.4% decrease in the risk of new-onset overweight among men and women, respectively. The interactions of PWI and covariates on the risk of overweight were not found. Conclusion Drinking more than 4 cups (≈1 liter) per day of plain water is associated with decrease in the risk of new-onset overweight among normal-weight individuals.
- Published
- 2020
15. The role of senescence-associated gene101 (PagSAG101a) in the regulation of secondary xylem formation in poplar
- Author
-
Dian Wang, Mengzhu Lu, Cheng Jiang, Guo-Hua Chai, Hui He, Shuang-Shuang Wen, Xueqin Song, Ying-Li Liu, and Shutang Zhao
- Subjects
Zinc finger ,Cambium ,Cell division ,fungi ,food and beverages ,Xylem ,Plant Science ,Biology ,biology.organism_classification ,Plants, Genetically Modified ,Biochemistry ,Wood ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,Transcriptome ,Populus ,Cell Wall ,Gene Expression Regulation, Plant ,Arabidopsis thaliana ,Secondary cell wall ,Woody plant ,Plant Proteins - Abstract
Wood is produced by accumulation of secondary xylem via proliferation and differentiation of the cambium cells in woody plants. Identifying the regulators involved in this process remains a challenging task. In this study, we isolated PagSAG101a, the homolog of Arabidopsis thaliana SAG101, from a hybrid poplar (Populus alba × P. glandulosa) clone 84K and investigated its role in secondary xylem development. PagSAG101a was expressed predominantly in lignified stems and localized in the nucleus. Compared with non-transgenic 84K plants, transgenic plants overexpressing PagSAG101a displayed increased plant height, internode number, stem diameter, xylem width, and secondary cell wall thickness, while opposite phenotypes were observed for PagSAG101a knock-out plants. Transcriptome analyses revealed that differentially expressed genes were enriched for those controlling cambium cell division activity and subsequent secondary cell wall deposition during xylem formation. In addition, the tandem CCCH zinc finger protein PagC3H17, which positively regulates secondary xylem width and secondary wall thickening in poplar, could bind to the promoter of PagSAG101a and mediate the regulation of xylem differentiation. Our results support that PagC3H17, downstream of PagC3H17, functions in wood development. This article is protected by copyright. All rights reserved.
- Published
- 2021
16. Brassinosteroid regulation of wood formation in poplar
- Author
-
Li Zehua, Yu Liu, Shu‐Tang Zhao, Mengzhu Lu, Andrew Groover, Juan Du, Ying-Li Liu, and Suzanne Gerttula
- Subjects
0106 biological sciences ,0301 basic medicine ,Cell type ,Physiology ,Secondary growth ,Cellular differentiation ,Plant Science ,Biology ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Brassinosteroids ,Gene expression ,Brassinosteroid ,Cloning, Molecular ,Gene ,Plant Proteins ,Triazoles ,Herbaceous plant ,Plants, Genetically Modified ,Wood ,Cell biology ,Populus ,030104 developmental biology ,chemistry ,Secondary cell wall ,010606 plant biology & botany - Abstract
Brassinosteroids have been implicated in the differentiation of vascular cell types in herbaceous plants, but their roles during secondary growth and wood formation are not well defined. Here we pharmacologically and genetically manipulated brassinosteroid levels in poplar trees and assayed the effects on secondary growth and wood formation, and on gene expression within stems. Elevated brassinosteroid levels resulted in increases in secondary growth and tension wood formation, while inhibition of brassinosteroid synthesis resulted in decreased growth and secondary vascular differentiation. Analysis of gene expression showed that brassinosteroid action is positively associated with genes involved in cell differentiation and cell-wall biosynthesis. The results presented here show that brassinosteroids play a foundational role in the regulation of secondary growth and wood formation, in part through the regulation of cell differentiation and secondary cell wall biosynthesis.
- Published
- 2019
17. PagGRF12a interacts with PagGIF1b to regulate secondary xylem development through modulating PagXND1a expression in Populus alba × P. glandulosa
- Author
-
Cheng Jiang, Jian-Jun Hu, Jinnan Wang, Houjun Zhou, Mengzhu Lu, Yanqiu Zhao, Ying-Li Liu, Shutang Zhao, Jihong Li, Fang Tang, and Xueqin Song
- Subjects
Chemistry ,Transgene ,fungi ,food and beverages ,Xylem ,Plant Development ,Plant Science ,Plants, Genetically Modified ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,Chromatin ,Plant development ,Populus ,Downregulation and upregulation ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,Transcription factor ,Vascular tissue ,Woody plant ,Transcription Factors - Abstract
Growth-regulating factors (GRFs) are important regulators of plant development and growth, but their possible roles in xylem development in woody plants remain unclear. Here, we report that Populus alba × Papulus glandulosa PagGRF12a negatively regulates xylem development in poplar. PagGRF12a is expressed in vascular tissues. Compared to non-transgenic control plants, transgenic poplar plants overexpressing PagGRF12a exhibited reduced xylem width and plants with repressed expression of PagGRF12a exhibited increased xylem width. Xylem NAC domain 1 (XND1) encodes a NAC domain transcription factor that regulates xylem development and transcriptional analyses revealed that PagXND1a is highly upregulated in PagGRF12a-overexpressing plants and downregulated in PagGRF12a-suppressed plants, indicating that PagGRF12a may regulate xylem development through PagXND1a. Transient transcriptional assays and chromatin immunoprecipitation-polymerase chain reaction assays confirmed that PagGRF12a directly upregulates PagXND1a. In addition, PagGRF12a interacts with the GRF-Interacting Factor (GIF) PagGIF1b, and this interaction enhances the effects of PagGRF12a on PagXND1a. Our results indicate that PagGRF12a inhibits xylem development by upregulating the expression of PagXND1a.
- Published
- 2021
18. Identification and Characterization of EvpQ, a Novel T6SS Effector Encoded on a Mobile Genetic Element in Edwardsiella piscicida
- Author
-
Duan You Li, Ying Li Liu, Xiao Jian Liao, Tian Tian He, Shan Shan Sun, Pin Nie, and Hai Xia Xie
- Subjects
Microbiology (medical) ,Genetics ,Sequence analysis ,Effector ,mobile genetic element ,Hypothetical protein ,lcsh:QR1-502 ,type VI secretion system ,EvpQ ,regulation ,Biology ,Microbiology ,lcsh:Microbiology ,effector ,Genomic island ,Gene cluster ,Edwardsiella piscicida ,Gene ,rpoS ,Original Research ,Type VI secretion system - Abstract
In this study, a hypothetical protein (ORF02740) secreted by Edwardsiella piscicida was identified. We renamed the ORF02740 protein as EvpQ, which is encoded by a mobile genetic element (MGE) in E. piscicida genome. The evpQ gene is spaced by 513 genes from type VI secretion system (T6SS) gene cluster. Low GC content, three tRNA, and three transposase genes nearby evpQ define this MGE that evpQ localizes as a genomic island. Sequence analysis reveals that EvpQ shares a conserved domain of C70 family cysteine protease and shares 23.91% identity with T3SS effector AvrRpt2 of phytopathogenic Erwinia amylovora. Instead, EvpQ of E. piscicida is proved to be secreted at a T6SS-dependent manner, and it can be translocated into host cells. EvpQ is thereof a novel T6SS effector. Significantly decreased competitive index of ΔevpQ strain in blue gourami fish (0.53 ± 0.27 in head kidney and 0.44 ± 0.19 in spleen) indicates that EvpQ contributes to the pathogenesis of E. piscicida. At 8-, 18-, and 24-h post-subculture into DMEM, the transcription of evpQ was found to be negatively regulated by Fur and positively regulated by EsrC, and the steady-state protein levels of EvpQ are negatively controlled by RpoS. Our study lays a foundation for further understanding the pathogenic role of T6SS in edwardsiellosis.
- Published
- 2021
19. Peritoneal dialysis effluent-derived exosomal miR-432-5p: an assessment tool for peritoneal dialysis efficacy
- Author
-
Yan, Tong, Jun-Yan, Fang, A-Hui, Song, Hai, Deng, Pu, Li, Ze-Hui, Huang, Ou-Yang, Ji, Xiao-Lin, Ge, Tong-Ying, Zhu, and Ying-Li, Liu
- Subjects
enzymes and coenzymes (carbohydrates) ,Original Article ,General Medicine - Abstract
BACKGROUND: Ultrafiltration (UF) volume and peritoneal solute transport rate (PSTR) are common parameters used to evaluate the efficacy of peritoneal dialysis (PD) on individual patients. It is unclear whether the level of exosomal microRNA (miRNA) in peritoneal dialysis effluent (PDE) can predict UF or PSTR. This study was designed to investigate if there is a correlation between PDE exosomal miRNA (miR-432-5p) levels and various UF volumes and PSTRs in PD patients. It also aimed to explore the underlying mechanism of water and dialytic sodium removal (DSR). METHODS: The PSTR was quantified using the 4-hour (4 h) 3.86% dialysate to plasma creatinine ratio. The PDE exosomes (PDE-exo) were isolated by ultracentrifugation. An miRNA assay was used to identify the different miRNA in the PDE-exo of patients in a high (H; PSTR >0.65, n=5) and low (L; PSTR
- Published
- 2022
20. Effect of roux-en Y gastric bypass surgery on patients with type 2 diabetes mellitus: A protocol of systematic review and meta-analysis
- Author
-
De-zhi Ke, De-wang Su, Jincai Shang, Ying-Li Liu, Hao Tian, Ke-yan Chen, and Rong-rong Yao
- Subjects
Research design ,Adult ,medicine.medical_specialty ,type 2 diabetes mellitus ,MEDLINE ,Gastric Bypass ,CINAHL ,medicine.disease_cause ,roux-en Y gastric bypass surgery ,law.invention ,Diabetes Complications ,03 medical and health sciences ,0302 clinical medicine ,Postoperative Complications ,Randomized controlled trial ,Clinical Protocols ,Meta-Analysis as Topic ,law ,Study Protocol Systematic Review ,Medicine ,Humans ,030212 general & internal medicine ,Obesity ,Intensive care medicine ,business.industry ,Gastric bypass surgery ,effect ,Type 2 Diabetes Mellitus ,nutritional and metabolic diseases ,General Medicine ,Diabetes Mellitus, Type 2 ,Research Design ,030220 oncology & carcinogenesis ,Meta-analysis ,Inclusion and exclusion criteria ,business ,Systematic Reviews as Topic ,Research Article - Abstract
Background: Previous studies have reported that roux-en Y gastric bypass surgery (RYGBS) can benefit patients with type 2 diabetes mellitus (T2DM). However, their conclusions are still inconsistent. Thus, this study will aim to assess the effect of RYGBS for patients with T2DM. Methods: In this study, the electronic databases of MEDLINE, EMBASE, CENTRAL, CINAHL, AMED, and CNKI from inceptions to the present without any limitations to language and publication status. All randomized controlled trials on assessing the effect of RYGBS for patients with T2DM will be included in this study. Two independent authors will carry out study search and selection according to the previous designed inclusion and exclusion criteria. At the same time, 2 authors will independently evaluate the risk of bias assessment by Cochrane risk of bias tool. Any disagreements between 2 authors will be solved by a third author through discussion. RevMan 5.3 software will be utilized for statistical analysis. Results: This study will summarize the most recent studies and will provide a deeper understanding about using the effect of RYGBS for patients with T2DM. Conclusions: The findings of this study will present the existing evidence for the effect of RYGBS for patients with T2DM. Systematic review registration: INPLASY202040127.
- Published
- 2020
21. Identification of the Genetic Requirements for Zinc Tolerance and Toxicity in
- Author
-
Yun-Ying, Zhao, Chun-Lei, Cao, Ying-Li, Liu, Jing, Wang, Jie, Li, Shi-Yun, Li, and Yu, Deng
- Subjects
Saccharomyces cerevisiae Proteins ,Chlorides ,Zinc Compounds ,Mutant Screen Report ,zinc toxicity ,genomics ,Reactive oxygen species (ROS) ,Drug Tolerance ,Protein Interaction Maps ,Saccharomyces cerevisiae ,genetic screening ,Genome, Fungal ,Reactive Oxygen Species - Abstract
Zinc is essential for almost all living organisms, since it serves as a crucial cofactor for transcription factors and enzymes. However, it is toxic to cell growth when present in excess. The present work aims to investigate the toxicity mechanisms induced by zinc stress in yeast cells. To this end, 108 yeast single-gene deletion mutants were identified sensitive to 6 mM ZnCl2 through a genome-wide screen. These genes were predominantly related to the biological processes of vacuolar acidification and transport, polyphosphate metabolic process, cytosolic transport, the process utilizing autophagic mechanism. A result from the measurement of intracellular zinc content showed that 64 mutants accumulated higher intracellular zinc under zinc stress than the wild-type cells. We further measured the intracellular ROS (reactive oxygen species) levels of 108 zinc-sensitive mutants treated with 3 mM ZnCl2. We showed that the intracellular ROS levels in 51 mutants were increased by high zinc stress, suggesting their possible involvement in regulating ROS homeostasis in response to high zinc. The results also revealed that excess zinc could generate oxidative damage and then activate the expression of several antioxidant defenses genes. Taken together, the data obtained indicated that excess zinc toxicity might be mainly due to the high intracellular zinc levels and ROS levels induced by zinc stress in yeast cells. Our current findings would provide a basis to understand the molecular mechanisms of zinc toxicity in yeast cells.
- Published
- 2019
22. 938RHRK941 is responsible for Ubiquitin specific protease 48 nuclear translocation which can stabilize NF-κB (p65) in the nucleus
- Author
-
Ying-Li Liu, Qing-Bao Tian, Jie Zheng, and Jing Yan
- Subjects
0301 basic medicine ,Protease ,Mechanism (biology) ,medicine.medical_treatment ,Regulator ,Chromosomal translocation ,General Medicine ,Biology ,Chromatin ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Genetics ,medicine ,Gene family ,Transcription factor ,Nucleus ,030217 neurology & neurosurgery - Abstract
The transcription factor NF-κB is a key regulator of cellular processes. A mechanism that contributes to timely termination of NF-κB activity is UPS-dependent degradation of p65 in the nucleus or on chromatin. The ubiquitin-specific protease that takes part in this process and its molecular mechanisms are shown in previous study, but which structural feature of USP48 was responsible for these effects is unknown. Here, we show that maybe the stability of NF-κB is controlled by proteasome-mediated degradation and ubiquitin-specific protease 48 (USP48), also known as synaptic ubiquitin-specific protease (synUSP) or USP31, can enhance NF-κB stability through proteasome-dependent regulation in the nucleus. USP48 contains a carboxyl-terminal nuclear localizing signal, 938RHRK941, which is responsible for its nuclear translocation. Our results demonstrate a more detailed mechanism for this member of the USP gene family in cellular processes.
- Published
- 2018
23. The impacts of nineteen mutations on the enzymatic activity of USP26
- Author
-
Ying-Jun Mi, Ying-Li Liu, Jing Zhao, Jie Zheng, and Qing-Bao Tian
- Subjects
0301 basic medicine ,Recombinant Fusion Proteins ,Mutant ,Biology ,USP26 ,03 medical and health sciences ,0302 clinical medicine ,Plasmid ,Escherichia coli ,Genetics ,Site-directed mutagenesis ,Gene ,chemistry.chemical_classification ,030219 obstetrics & reproductive medicine ,Wild type ,General Medicine ,Molecular biology ,Enzyme assay ,Cysteine Endopeptidases ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,Transcription Termination, Genetic ,Mutation ,Mutagenesis, Site-Directed ,biology.protein ,Mutant Proteins ,Plasmids - Abstract
Objective The association between mutations in the USP26 gene and male infertility has been studied intensively. However, the biological function of the mutant proteins remains to be elucidated. To confirm the effects of the reported mutations, we analyse the enzyme activity of USP26 between the wild-type and the variants from a molecular perspective. Methods Using pGEX-USP26 as a template, site-directed mutagenesis was conducted to generate nineteen USP26 mutant plasmids. Using Ub-Met-β-gal and GST-Ub52 as model substrates, a USP cleavage assay was conducted to assess the enzymatic activities of the mutants. Results The enzyme activity of the Q156H mutant disappeared, but the other 18 mutants had the same activity as the wild type. E174# and E189# were terminal mutants, but they still had the same activity as the wild type. When we constructed the transcription terminal mutants E174#(1-522 bp), E174#(523-2742 bp), E189#(1-567 bp) and E189#(568-2742 bp) artificially, the enzyme activity of these four mutants disappeared. Conclusions We have successfully constructed nineteen mutants of USP26. The enzyme activity of the Q156H mutant disappeared, but the enzyme activities of the other 18 mutants were the same as that of the wild type.
- Published
- 2018
24. Effects of telmisartan on improving leptin resistance and inhibiting hepatic fibrosis in rats with non-alcoholic fatty liver disease
- Author
-
Qiu‑Zan Zhang, Li‑Na Fu, Xiu‑Ru Wang, Ying‑Li Liu, Jing Zhang, Bang‑Mao Wang, and Yan‑Rong Wang
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,Oncogene ,Leptin ,medicine.medical_treatment ,Fatty liver ,Articles ,General Medicine ,Biology ,medicine.disease ,Molecular medicine ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Endocrinology ,Immunology and Microbiology (miscellaneous) ,Apoptosis ,Internal medicine ,medicine ,030211 gastroenterology & hepatology ,Telmisartan ,Hepatic fibrosis ,Saline ,medicine.drug - Abstract
The present study aimed to investigate the impacts of telmisartan (TEL) on hepatic fibrosis, serum leptin, leptin protein in liver tissue and its mRNA expression level in rats with non-alcoholic fatty liver disease (NAFLD). Male Sprague Dawley rats were randomly divided into the control (N), model (M), polyene phosphatidylcholine (P) and TEL (T) groups. Group M and the intervention groups were given a high-fat diet for 12 weeks to induce NAFLD, followed by 4 weeks of intragastric administration of normal saline (1.0 ml/kg/day), polyene phosphatidylcholine (PPC; 123.1 mg/kg/day) and TEL (8 mg/kg/day). The liver tissue was then assessed for the NAFLD activity score and fibrosis score (FS), and serum biochemistry and leptin levels were determined. Additionally, leptin protein expression levels were examined by western blotting and the expression of leptin mRNA was investigated by reverse transcription-polymerase chain reaction. TEL significantly improved FS in rats (P0.05). TEL reduced serum leptin, leptin protein and its mRNA in the liver tissue of NAFLD rats, and improved the pathological indicators of liver fibrosis.
- Published
- 2017
25. Identification of candidate substrates of ubiquitin-specific protease 13 using 2D-DIGE
- Author
-
Dian-Wu Liu, Li-Juan Tang, Ying-Jun Mi, Qing-Bao Tian, Ying-Li Liu, Jian-Min Wang, and Su-Fen Qi
- Subjects
0301 basic medicine ,Polyadenylation ,liquid chromatography-mass spectroscopy/mass spectrometry ,enzymatic activity ,Mutation, Missense ,Cell Line ,Substrate Specificity ,Phosphoglycerate mutase ,03 medical and health sciences ,Ubiquitin ,Annexin ,Endopeptidases ,Genetics ,Humans ,two-dimensional difference gel electrophoresis ,Electrophoresis, Gel, Two-Dimensional ,Methylosome ,Thimet oligopeptidase ,biology ,vinculin ,Adenylosuccinate synthase ,General Medicine ,Articles ,Vinculin ,Molecular biology ,030104 developmental biology ,Biochemistry ,Amino Acid Substitution ,biology.protein ,Ubiquitin-Specific Proteases ,ubiquitin-specific protease 13 - Abstract
The present study aimed to identify candidate substrates of ubiquitin-specific protease (USP)13 using two-dimensional fluorescence difference gel electrophoresis (2D-DIGE). USP13 is a well-characterized member of the USP family, which regulates diverse cellular functions by cleaving ubiquitin from ubiquitinated protein substrates. However, existing studies indicate that USP13 has no detectable hydrolytic activity in vitro. This finding implies that USP13 likely has different substrate specificity. In this study, a USP cleavage assay was performed using two different types of model substrates (glutathione S-transferase-Ub52 and ubiquitin-β-galactosidase) to detect the deubiquitinating enzyme (DUB) activity of USP13. In addition, a proteomic approach was taken by using 2D-DIGE to detect cellular proteins whose expressoin is significantly altered in 293T cell lines following the overexpression of USP13 or its C345S mutant (the catalytically inactive form). The data indicated that USP13 still has no detectable DUB activity in vitro nor does C345S. The results of 2D-DIGE demonstrated that the expression of several proteins increased or decreased significantly in 293T cells following the overexpression of USP13. Mass spec-troscopy analysis of gel spots identified 7 proteins, including 4 proteins with an increased expression, namely vinculin, thimet oligopeptidase, cleavage and polyadenylation specific factor 3, and methylosome protein 50, and 3 proteins with a decreased expression, namely adenylosuccinate synthetase, annexin and phosphoglycerate mutase. In addition, in the samples of 293T cell lines after the overexpression of USP13 and USP13 C345S, vinculin exhibited an increased expression, suggesting that it may be a candidate substrate of USP13. However, sufficient follow-up validation studies are required in order to determine whether vinculin protein directly interacts with USP13.
- Published
- 2017
26. Edwardsiella piscicida type III protein EseJ suppresses apoptosis through down regulating type 1 fimbriae, which stimulate the cleavage of caspase-8
- Author
-
Tian Tian He, Pin Nie, Ying Zhou, Ying Li Liu, Ai Hua Li, Duan You Li, and Hai Xia Xie
- Subjects
Lipopolysaccharides ,Immunology ,Fimbria ,Apoptosis ,Biology ,Caspase 8 ,Microbiology ,Type three secretion system ,Cell Line ,03 medical and health sciences ,Epitopes ,Fish Diseases ,Mice ,Bacterial Proteins ,Virology ,Type III Secretion Systems ,Animals ,Secretion ,Zebrafish ,030304 developmental biology ,0303 health sciences ,TUNEL assay ,030306 microbiology ,Effector ,Caspase 3 ,Macrophages ,Enterobacteriaceae Infections ,Molecular biology ,Caspase 9 ,Terminal deoxynucleotidyl transferase ,Edwardsiella ,Fimbriae, Bacterial ,Larva ,Host-Pathogen Interactions - Abstract
The type III secretion system effector EseJ plays a regulatory role inside bacteria. It suppresses the adherence of Edwardsiella piscicida (E. piscicida) to host epithelial cells by down regulating type 1 fimbriae. In this study, we observed that more macrophages infected with ΔeseJ strain of E. piscicida detached as compared with those infected with the wild-type (WT) strain. Terminal deoxynucleotidyl transferase dUTP nick-end labelling (TUNEL) staining and cleaved caspase-3 examination revealed that the detachment is due to increased apoptosis, suggesting that EseJ suppresses macrophage apoptosis. However, apoptosis inhibition by EseJ is not relative to a type III secretion system (T3SS) and is not related to EseJ's translocation. Since EseJ negatively regulates type 1 fimbriae, murine J774A.1 cells were infected with ΔeseJΔfimA or ΔeseJΔfimH strains. It was demonstrated that ΔeseJ stimulates macrophage apoptosis through type 1 fimbriae. Moreover, we found that infecting J774A.1 cells with the ΔeseJ strain increased levels of cleaved caspase-8, caspase-9, and caspase-3, demonstrating that EseJ inhibits apoptosis through either an extrinsic or a combination of extrinsic and intrinsic pathways. Pre-treatment of macrophages with caspase-8 inhibitor prior to infection with the ΔeseJ strain decreased the levels of cleaved caspase-8, caspase-9, and caspase-3, indicating that the ΔeseJ strain stimulates apoptosis, mainly through an extrinsic pathway by up regulating type 1 fimbriae. Zebrafish larvae or blue gourami fish infected with the ΔeseJ strain consistently exhibited higher apoptosis than those infected with the E. piscicida WT strain or ΔeseJΔfimA strain. Taken together, we revealed that the T3SS protein EseJ of E. piscicida inhibits host apoptosis, mainly through an extrinsic pathway by down regulating type 1 fimbriae.
- Published
- 2019
27. The Edwardsiella piscicida Type III Translocon Protein EseC Inhibits Biofilm Formation by Sequestering EseE
- Author
-
Pin Nie, Jia Yi, Tian Tian He, Hongbing Yu, Lu Yi Liu, Hai Xia Xie, and Ying Li Liu
- Subjects
Receptors, Peptide ,Virulence Factors ,Operon ,Receptors, Cytoplasmic and Nuclear ,Virulence ,Genetics and Molecular Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Type three secretion system ,Fish Diseases ,03 medical and health sciences ,Bacterial Proteins ,Type III Secretion Systems ,Animals ,030304 developmental biology ,0303 health sciences ,Membrane Glycoproteins ,Ecology ,biology ,030306 microbiology ,Chemistry ,Effector ,Calcium-Binding Proteins ,Edwardsiella tarda ,Biofilm ,Gene Expression Regulation, Bacterial ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Translocon ,Edwardsiella ,Biofilms ,Gene Deletion ,Intracellular ,Food Science ,Biotechnology - Abstract
The type III secretion system (T3SS) is one of the most important virulence factors of the fish pathogen Edwardsiella piscicida. It contains three translocon proteins, EseB, EseC, and EseD, required for translocation of effector proteins into host cells. We have previously shown that EseB forms filamentous appendages on the surface of E. piscicida, and these filamentous structures mediate bacterial cell-cell interactions promoting autoaggregation and biofilm formation. In the present study, we show that EseC, but not EseD, inhibits the autoaggregation and biofilm formation of E. piscicida. At 18 h postsubculture, a Delta eseC strain developed strong autoaggregation and mature biofilm formation, accompanied by enhanced formation of EseB filamentous appendages. This is in contrast to the weak autoaggregation and immature biofilm formation seen in the E. piscicida wild-type strain. EseE, a protein that directly binds to EseC and also positively regulates the transcription of the escC-eseE operon, was liberated and showed increased levels in the absence of EseC. This led to augmented transcription of the escC-eseE operon, thereby increasing the steady-state protein levels of intracellular EseB, EseD, and EseE, as well as biofilm formation. Notably, the levels of intracellular EseB and EseD produced by the Delta eseE and Delta eseC Delta eseE strains were similar but remarkably lower than those produced by the wild-type strain at 18 h postsubculture. Taken together, we have shown that the translocon protein EseC inhibits biofilm formation through sequestering EseE, a positive regulator of the escC-eseE operon. IMPORTANCE Edwardsiella piscicida, previously known as Edwardsiella tarda, is a Gram-negative intracellular pathogen that mainly infects fish. The type III secretion system (T3SS) plays a pivotal role in its pathogenesis. The T3SS translocon protein EseB is required for the assembly of filamentous appendages on the surface of E. piscicida. The interactions between the appendages facilitate autoaggregation and biofilm formation. In this study, we explored the role of the other two translocon proteins, EseC and EseD, in biofilm formation. We have demonstrated that EseC, but not EseD, inhibits the autoaggregation and biofilm formation of E. piscicida, providing new insights into the regulatory mechanism involved in E. piscicida biofilm formation.
- Published
- 2019
28. Bridging the 'gap' in systematic conservation planning
- Author
-
Jing-xuan Fu, Ying-li Liu, Feng Zhang, Yin-bo Zhang, Nathan Phillips, and Ming-gang Zhang
- Subjects
0106 biological sciences ,Nature reserve ,Conservation planning ,Prioritization ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,Environmental resource management ,Biodiversity ,010603 evolutionary biology ,01 natural sciences ,Biodiversity hotspot ,Network planning and design ,Biodiversity conservation ,Geography ,Threatened species ,business ,Nature and Landscape Conservation - Abstract
Biodiversity hotspots at the global and national scale have contributed important information for biodiversity conservation; however, in hotspot designation two kinds of “gap” greatly limit conservation planning, which this study identifies as the “scale gap” and the “conservation gap”. To address the gap, we integrated systematic conservation planning (SCP) with gap analysis to optimize solutions of protected areas planning at local scales. In this study, we presented a quantitative spatial methodology for prioritization and downscaled to a planning case study in the province of Shanxi, China. First, the spatial distribution of 54 threatened plant species were mapped at fine resolution, and scenarios of conservation targets for taxa were generated according to species attributes, which are both the necessary inputs in selection algorithm of priority conservation. Then we determined 17 priority conservation areas using SCP, which only cover ∼5% of the total area but could represent 100% of the threatened plant species in Shanxi Province. We confirmed that priority conservation areas determined based on SCP can achieve maximum efficiency of conservation, especially considering representation of small-ranged species. Further, through overlapping priority conservation areas with nature reserves, six conservation gaps were identified for future conservation efforts. Our findings provide suggestions for protected areas network planning of botanical conservation in real-world contexts. The proposed method of integrating SCP with gap analysis can be generally used in bridging the gap between biodiversity priority areas and protected areas in proactive planning and management protocol for biodiversity conservation.
- Published
- 2016
29. The deubiquitinating enzyme activity of USP22 is necessary for regulating HeLa cell growth
- Author
-
Dian-Wu Liu, Li-Juan Tang, Jie Zheng, Jian-Min Wang, Qing-Bao Tian, Wei Han, and Ying-Li Liu
- Subjects
Cell ,Apoptosis ,Polymorphism, Single Nucleotide ,Deubiquitinating enzyme ,HeLa ,Proto-Oncogene Proteins c-myc ,Cyclin D2 ,Genetics ,medicine ,Humans ,RNA, Small Interfering ,Cell Proliferation ,Polycomb Repressive Complex 1 ,biology ,Cell growth ,Cell Cycle ,General Medicine ,Oncogenes ,Cell cycle ,biology.organism_classification ,Cell biology ,medicine.anatomical_structure ,Amino Acid Substitution ,Gene Knockdown Techniques ,Cancer cell ,Mutation ,biology.protein ,Mutagenesis, Site-Directed ,Thiolester Hydrolases ,Ubiquitin-Specific Proteases ,Tumor Suppressor Protein p53 ,Ubiquitin Thiolesterase ,HeLa Cells ,Signal Transduction - Abstract
Ubiquitin-specific protease 22 (USP22) can regulate the cell cycle and apoptosis in many cancer cell types, while it is still unclear whether the deubiquitinating enzyme activity of USP22 is necessary for these processes. As little is known about the impact of USP22 on the growth of HeLa cell, we observed whether USP22 can effectively regulate HeLa cell growth as well as the necessity of deubiquitinating enzyme activity for these processes in HeLa cell. In this study, we demonstrate that USP22 can regulate cell cycle but not apoptosis in HeLa cell. The deubiquitinating enzyme activity of USP22 is necessary for this process as confirmed by an activity-deleted mutant (C185S) and an activity-decreased mutant (Y513C). In addition, the deubiquitinating enzyme activity of USP22 is related to the levels of BMI-1, c-Myc, cyclin D2 and p53. Our findings indicate that the deubiquitinating enzyme activity of USP22 is necessary for regulating HeLa cell growth, and it promotes cell proliferation via the c-Myc/cyclin D2, BMI-1 and p53 pathways in HeLa cell.
- Published
- 2015
30. The Edwardsiella piscicida type III translocon protein EseC inhibits biofilm formation through sequestering EseE.
- Author
-
Ying Li Liu, Tian Tian He, Lu Yi Liu, Jia Yi, Pin Nie, Hong Bing Yu, and Hai Xia Xie
- Subjects
- *
SECRETION , *FISH pathogens , *CELL communication , *PROTEINS , *EDWARDSIELLA , *SUBCULTURES - Abstract
The type III secretion system (T3SS) is one of the most important virulence factors of the fish pathogen Edwardsiella piscicida. It contains three translocon proteins, EseB, EseC and EseD, required for translocation of effector proteins into host cells. We have previously shown that EseB forms filamentous appendages on E. piscicida's surface, and these filamentous structures mediate bacterial cell-cell interactions promoting autoaggregation and biofilm formation. In the present study, we show that EseC, but not EseD, inhibits E. piscicida's autoaggregation and biofilm formation. At 18 h post subculture, a ΔeseC strain developed strong autoaggregation and mature biofilm, accompanied by enhanced formation of EseB filamentous appendages. This is in contrast to weak autoaggregation and immature biofilm formation seen in E. piscicida wild-type strain. EseE, a protein that directly binds to EseC and also positively regulates the transcription of the escC~eseE operon, was liberated and showed increased levels in the absence of EseC. This led to augmented transcription of the escC~eseE operon, thereby increasing the steady-state protein levels of intracellular EseB, EseD and EseE, and biofilm formation. Notably, the production of intracellular EseB and EseD by ΔeseE and ΔeseCΔeseE strains was similar, but remarkably lower than that by the wild-type strain at 18 h post subculture. Taken together, we have shown that the translocon protein EseC inhibits biofilm formation through sequestering EseE, a positive regulator of the escC~eseE operon. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
31. Effect of roux-en Y gastric bypass surgery on patients with type 2 diabetes mellitus: A protocol of systematic review and meta-analysis.
- Author
-
Ke-Yan Chen, Ying-Li Liu, Jin-Cai Shang, De-Wang Su, Rong-Rong Yao, De-Zhi Ke, Hao Tian, Chen, Ke-Yan, Liu, Ying-Li, Shang, Jin-Cai, Su, De-Wang, Yao, Rong-Rong, Ke, De-Zhi, and Tian, Hao
- Published
- 2020
- Full Text
- View/download PDF
32. The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)
- Author
-
Ying Lu, Yan Zhao, Xuehui Huang, Zhenjing Liu, Hengyun Lu, Tao Wang, Ying-Li Liu, Jie Chen, Kun Miao, Qi Feng, Bin Han, Lei Zhang, Licai Yuan, Yunli Guo, Qijun Weng, Qiang Zhao, Lubin Li, Xuewen Yang, Wenli Tang, Danlin Fan, Zhimin Gao, Xing’e Liu, Yan Li, Wen-Jun Li, Caiyun Zhuang, Guanshui Liu, Na Yao, Benhua Fei, Zehui Jiang, Congcong Zhou, Kunyan Liu, Yiqi Lu, Xiaolu Cao, Zhenhua Liu, Zhenhua Peng, Tingting Lu, Tao Huang, Zemin Ning, Tao Hu, and Chuanrang Zhu
- Subjects
Whole genome sequencing ,Bamboo ,biology ,DNA, Plant ,Gene prediction ,Bambusa ,Flowers ,biology.organism_classification ,Genes, Plant ,Genome ,Bamboo shoot ,Droughts ,Trees ,Phyllostachys ,Phyllostachys edulis ,Cell Wall ,Gene Expression Regulation, Plant ,RNA, Plant ,Multigene Family ,Botany ,Genetics ,Gene family ,Genome, Plant - Abstract
Bamboo represents the only major lineage of grasses that is native to forests and is one of the most important non-timber forest products in the world. However, no species in the Bambusoideae subfamily has been sequenced. Here, we report a high-quality draft genome sequence of moso bamboo (P. heterocycla var. pubescens). The 2.05-Gb assembly covers 95% of the genomic region. Gene prediction modeling identified 31,987 genes, most of which are supported by cDNA and deep RNA sequencing data. Analyses of clustered gene families and gene collinearity show that bamboo underwent whole-genome duplication 7-12 million years ago. Identification of gene families that are key in cell wall biosynthesis suggests that the whole-genome duplication event generated more gene duplicates involved in bamboo shoot development. RNA sequencing analysis of bamboo flowering tissues suggests a potential connection between drought-responsive and flowering genes.
- Published
- 2012
33. Paraoxonase 1 polymorphisms L55M and Q192R were not risk factors for Parkinson's disease: a HuGE review and meta-analysis
- Author
-
Ying-Li Liu, Jie Yang, Tian Liu, Jian-Min Wang, Jie Zheng, Chao-Nan Wang, Qing-Bao Tian, Dian-Wu Liu, and Ming-Wei Wang
- Subjects
Oncology ,Male ,medicine.medical_specialty ,Funnel plot ,Biology ,Bioinformatics ,White People ,Asian People ,Risk Factors ,Internal medicine ,Genetic model ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Genetic Association Studies ,Genetic association ,Polymorphism, Genetic ,Models, Genetic ,Aryldialkylphosphatase ,Parkinson Disease ,General Medicine ,Publication bias ,Odds ratio ,Random effects model ,PON1 ,Meta-analysis ,Female - Abstract
Purpose The Paraoxonase 1 (PON1) has been studied as a potential candidate gene for Parkinson's disease risk, but direct evidence from genetic association studies remains inconclusive. We performed a meta-analysis pooling data from all relevant studies in order to determine the effects of two PON 1 polymorphisms (L55M and Q192R) on Parkinson's disease. Methods We applied a random effects to combine odds ratio (OR) and 95% confidence intervals. Q statistic was used to evaluate the homogeneity, and Egger's test and Funnel plot were used to assess publication bias. In secondary analyses, we examined dominant and recessive models as well. Results Concerning the PON1 L55M polymorphism, we identified 9 eligible studies (a total of 2582 cases and 3997 controls). The random effects pooled OR was OR = 1.29, (0.90, 1.84). Concerning the Q192R polymorphism, we identified 7 eligible studies (a total of 2582 cases and 3997 controls). The random effects pooled OR was OR = 1.08(0.81, 1.43). Analysis with dominant and recessive genetic models yielded the same inferences as genotype-based comparisons for both of the two polymorphisms. Conclusion The results of this meta-analysis suggested that both PON1 L55M and Q192R were not responsible for PD.
- Published
- 2011
34. Therapeutic effects of transplantation of bone marrow mesenchymal stem cells on ConA-induced acute liver injury in mice
- Author
-
Yuan-Fu Xu, Ying-li Liu, Dan-Na Wang, Chao-xia Sun, Wen-tian Liu, and Hai-Ying Guo
- Subjects
Acute liver injury ,Transplantation ,Pathology ,medicine.medical_specialty ,business.industry ,Therapeutic effect ,Medicine ,business ,Bone marrow mesenchymal stem cells ,Stem cell transplantation for articular cartilage repair - Published
- 2015
35. Cloning and Molecular Characterization of the Major Light Harvesting Antenna Protein Genes of PSⅡ in Phyllostachys edulis
- Author
-
Zhi-Min Gao, Zhen-Hua Peng, and Ying-Li Liu
- Subjects
Cloning ,Botany ,Computational biology ,Antenna (radio) ,Biology ,Gene - Published
- 2012
36. REGULATION OF ARTERIAL STIFFNESS: CELLULAR, MOLECULAR AND NEUROGENIC MECHANISMS☆
- Author
-
Kayla Viegas, Mark Butlin, Ying-Li Liu, Alberto Avolio, George Lindesay, and Bhargava Avadhanam
- Subjects
lcsh:Diseases of the circulatory (Cardiovascular) system ,Vascular smooth muscle ,lcsh:Specialties of internal medicine ,business.industry ,Hemodynamics ,Extracellular matrix ,General Medicine ,Smooth muscle contraction ,Anatomy ,medicine.disease ,S-nitrosylation ,Calcification ,Pulse pressure ,Pulse wave velocity ,Blood pressure ,lcsh:RC581-951 ,lcsh:RC666-701 ,Biophysics ,Arterial stiffness ,medicine ,Post-translational modification ,business - Abstract
The lasting legacy of Donald McDonald has been in the establishment of physiolog- ical and biophysical principles of the relation of blood pressure and flow in arteries. This rela- tion is determined by physical properties of arteries, among which wall stiffness is a dominant parameter. Increased arterial stiffness leads to an increase in pulse pressure due to alterations in the capacitive properties of large arteries and the increase in pulse wave velocity, which leads to early return of reflected waves. While the haemodynamic and biophysical effects of arterial stiffness have been studied extensively and are well established, the underlying mech- anisms responsible for the alteration of the structural properties of the arterial wall are not as well understood. Some potential mechanisms will be addressed in relation to the interaction of the cellular and acellular components and their effect on the structural integrity of the arterial wall. The modification of the smooth muscle cell to influence medial calcification and the endothelium-dependent nitric oxide pathways affecting the extracellular matrix through post-translational modification of proteins form part of positive feedback mechanisms in the regulation of arterial stiffness through cellular and molecular processes. This is further modu- lated by neurogenic effects on smooth muscle contractility affecting wall stiffness. While the passive effects on the arterial wall due to blood pressure and heart rate cannot be readily modified, uncovering cellular, molecular and neurogenic mechanisms regulating arterial stiff- ness can offer novel means to interrogate pathways leading to the detrimental effects of degeneration of arterial function and altered relation of pressure and flow.
- Published
- 2011
37. Magnetic Characteristics of Carbon-Doped Nanocrystalline TiO2.
- Author
-
Qi-Ye Wen, Huai-Wu Zhang, Qing-Hui Yang, De-En Gu, Yuan-Xun Li, Ying-Li Liu, Jian Shen, and Xiao, J. Q.
- Subjects
TITANIUM dioxide ,NANOCRYSTALS ,CURIE temperature ,MAGNETIZATION ,FERROMAGNETISM - Abstract
Carbon doped TiO
2 nanocrystal powder samples with various C contents were synthesized by a low-temperature sol-gel method, and a large lattic C contents of 12.7% was obtained. We demonstrated that the C ions were homogenously doped into the TiO2 matrix at the form of substitutional C (Cs-o) and interstitial C (C1 ), without precipitation of TiC and other impurity phase. Our results show that C-doped TiO2 is ferromagnetic with the Curie temperature well above room temperature. The magnetization is mainly related to the content of Cs-o, suggesting that the intrinsic ferromagnetism originates from the Ti-C system in the TiO2 environment. [ABSTRACT FROM AUTHOR]- Published
- 2009
- Full Text
- View/download PDF
38. Magnetic Characteristics of Carbon-Doped Nanocrystalline TiO2.
- Author
-
Qi-Ye Wen, Huai-Wu Zhang, Qing-Hui Yang, De-En Gu, Yuan-Xun Li, Ying-Li Liu, Jian Shen, and Xiao, J. Q.
- Subjects
- *
TITANIUM dioxide , *NANOCRYSTALS , *CURIE temperature , *MAGNETIZATION , *FERROMAGNETISM - Abstract
Carbon doped TiO2 nanocrystal powder samples with various C contents were synthesized by a low-temperature sol-gel method, and a large lattic C contents of 12.7% was obtained. We demonstrated that the C ions were homogenously doped into the TiO2 matrix at the form of substitutional C (Cs-o) and interstitial C (C1), without precipitation of TiC and other impurity phase. Our results show that C-doped TiO2 is ferromagnetic with the Curie temperature well above room temperature. The magnetization is mainly related to the content of Cs-o, suggesting that the intrinsic ferromagnetism originates from the Ti-C system in the TiO2 environment. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.