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Abstract Parents confront multiple aspects of offspring demands and need to coordinate different parental care tasks. Biparental care is considered to evolve under circumstances where one parent is not competent for all tasks and cannot efficiently raise offspring. However, this hypothesis is difficult to test, as uniparental and biparental care rarely coexist. Chinese penduline tits (Remiz consobrinus) provide such a system where both parental care types occur. Here, we experimentally investigated whether parents in biparental nests are less capable of caring than parents in uniparental nests. We monitored parenting efforts at (1) naturally uniparental and biparental nests and (2) biparental nests before and during the temporary removal of a parent. Given the relatively small sample sizes, we have employed various statistical analyses confirming the robustness of our results. We found that total feeding frequency and brooding duration were similar for natural uniparental and biparental nests. Feeding frequency, but not brooding duration, contributed significantly to nestling mass. In line with this, a temporary parental removal revealed that the remaining parents at biparental nests fully compensated for the partner's feeding absence but not for brooding duration. This reflects that the manipulated parents are confronted with a trade‐off between feeding and brooding and were selected to invest in the more influential one. However, such a trade‐off may not occur in parents of natural uniparental care nests. The different capabilities of a parent independently coordinating feeding and brooding tasks suggest that parents from biparental and uniparental nests were exposed to different resource conditions, thereby foraging efficiency may differ between care types.

The temperature experienced by avian embryos during development has important impacts on their growth and post‐hatching phenotypes. Ambient temperature can directly affect avian nest temperature and indirectly affect it through its impact on parental incubation behaviours. Because the nests of uniparental incubators are usually left unattended more frequently than the nests of biparental incubators whose nests can be attended by another bird when one bird leaves the nest, we predict that the effect of ambient temperature on nest temperature and thus on embryonic development (specifically, incubation period length and hatching success) and post‐hatching phenotype (i.e. potential carry‐over effect on nestling body mass and condition) should be greater in uniparental incubators than in biparental incubators. To test this prediction, we studied two congeneric species, the biparental incubating black‐throated tits Aegithalos concinnus and the uniparental incubating silver‐throated tits A. glaucogularis. We found that although the embryos of the two species both developed faster (shorter incubation period length) when ambient temperature was higher, the slope was significantly greater for silver‐throated tits than for black‐throated tits, consistent with our prediction of a greater effect of ambient temperature on embryonic development in silver‐throated tits. However, the result was not due to a greater effect of ambient temperature on nest temperature, because nest temperatures of the two species had positive relationships with ambient temperature in a similar way. Therefore, it implies a greater response of silver‐throated tit embryos to temperature change. In addition, ambient temperature during the incubation stage did not affect either hatching success or nestling body mass and condition in both species. Although our predictions were not fully supported, our findings highlight the different responses of embryonic development to environmental changes between a uniparental incubator and a biparental incubator, and suggest further research to explore the mechanisms.

Birds exhibit a high degree of migratory diversity, which is influenced by various ecological factors and life history strategies. Conducting studies on tropical bird migration, of which research is scarce, and comparing it with temperate birds can enhance our understanding of bird migration behaviour and its underlying mechanisms. In this study, we explored the migration behaviour of a breeding population of the Barn Swallow (Hirundo rustica) in Zhanjiang, southern China, a region located in the northern tropics, using light-level geolocators. From 2021 to 2023, we deployed geolocators on 92 breeding swallows and retrieved geolocators successfully from 23 individuals. These swallows all exhibited migratory behaviour, and wintering on various islands in Southeast Asia. They displayed sex differences in their wintering locations. All males concentrated in Borneo, while females primarily chose Borneo but also dispersed to the Philippines, South China Sea, and Vietnam for wintering. The studied swallow population adopted a seasonal migration pattern of “indirect in autumn, direct in spring”, bypassing the ecological barrier of the South China Sea in autumn and tending to directly cross it in spring migration. Moreover, the distance and duration of autumn migration was significantly longer than those of the spring migration. Compared to temperate Barn Swallows, the Barn Swallow population breeding in Zhanjiang adopts a pattern of “intra-tropical migration” and initiates autumn migration earlier. The formation of their migration pattern may be limited by ecological and physiological factors.

Population genomic data could provide valuable information for conservation efforts; however, limited studies have been conducted to investigate the genetic status of threatened pheasants. Reeves's Pheasant (Syrmaticus reevesii) is facing population decline, attributed to increases in habitat loss. There is a knowledge gap in understanding the genomic status and genetic basis underlying the local adaptation of this threatened bird. Here, we used population genomic data to assess population structure, genetic diversity, inbreeding patterns, and genetic divergence. Furthermore, we identified candidate genes linked with adaptation across the current distribution of Reeves's Pheasant. The present study assembled the first de novo genome sequence of Reeves's Pheasant and annotated 19,458 genes. We also sequenced 30 individuals from three populations (Dabie Mountain, Shennongjia, Qinling Mountain) and found that there was clear population structure among those populations. By comparing with other threatened species, we found that Reeves's Pheasants have low genetic diversity. Runs of homozygosity suggest that the Shennongjia population has experienced serious inbreeding. The demographic history results indicated that three populations experienced several declines during the glacial period. Local adaptative analysis among the populations identified 241 candidate genes under directional selection. They are involved in a large variety of processes, including the immune response and pigmentation. Our results suggest that the three populations should be considered as three different conservation units. The current study provides genetic evidence for conserving the threatened Reeves's Pheasant and provides genomic resources for global biodiversity management.

Abstract Studies show that birds cognize human disturbance as a potential predation risk. However, the responses of breeding birds to long‐term continuous disturbance by research activities and whether researcher disturbance affects the fitness of target species remain poorly understood. In this study, we used field observation data collected over 6 years to assess the potential impacts of research activities on nest‐site selection and nest success of the Emei Shan Liocichla (Liocichla omeiensis), a vulnerable babbler species endemic to Southwest China. Our results showed that Emei Shan Liocichlas tended to nest in taller nesting plants or the higher parts of nesting plants to increase nest‐site height following researcher disturbance. The average height of Emei Shan Liocichla nests increased by 52.2% over the 6‐year study period, from 129.8 ± 9.2 cm in 2009 (n = 11) to 197.5 ± 12.1 cm in 2015 (n = 18). While some pairs adopted a different strategy, placing their nests in Rosaceae plants with thorns instead of the bamboo Chimonobambusa szechuanensis (the favored nesting plant of the Emei Shan Liocichla) under high interference pressure, which made it more difficult for researchers to approach their nests. There were no significant differences both in clutch size and nest success between the low‐ and high‐disturbance groups. The study revealed the behavioral response pattern of breeding Emei Shan Liocichlas to researcher disturbance, which will contribute to conservation of this threatened songbird and the knowledge of reproductive strategies of birds. Developing specific guidelines for fieldwork and strengthening visitor management within its core habitat of Emei Shan Liocichla during breeding period should be considered.

Summary: Arctic environments are changing rapidly and if we are to understand the resilience of species to future changes, we need to investigate alterations in their life histories. Egg size and egg shape are key life-history traits, reflecting parental investment as well as influencing future reproductive success. Here we focus on egg characteristics in two Arctic shorebirds, the Dunlin (Calidris alpina) and the Temminck’s stint (Calidris temminckii). Using egg photos that encompass their full breeding ranges, we show that egg characteristics exhibit significant longitudinal variations, and the variation in the monogamous species (Dunlin) is significantly greater than the polygamous species (Temminck’s stint). Our finding is consistent with the recent “disperse-to-mate” hypothesis which asserts that polygamous species disperse further to find mates than monogamous species, and by doing so they create panmictic populations. Taken together, Arctic shorebirds offer excellent opportunities to understand evolutionary patterns in life history traits.

Abstract Black‐headed penduline tit (Remiz macronyx) is a poorly known bird species mainly distributed in Iran, Turkmenistan, and Kazakhstan. The distribution of black‐headed penduline tit is disjointed and fragmented, and it occurs only along lakes or rivers surrounded by extensive reedbeds. Four subspecies of R. macronyx have been recognized (macronyx, neglectus, nigricans, and ssaposhnikowi). The ssaposhnikowi subspecies was previously known to occur only around lakes in southeastern Kazakhstan. In this study, we reported the first confirmed breeding record of R. m. ssaposhnikowi in the Nalati wetland, Ili, Xinjiang, China, extending the distribution range of the black‐headed penduline tit by 350 km to the east. We also obtained new information about the morphology and breeding behavior of R. m. ssaposhnikowi, which can be useful for the taxonomy of penduline tits, especially in distinguishing black‐headed penduline tits from Eurasian penduline tits (R. pendulinus).

Abstract Protected areas provide essential habitats for wildlife by conserving natural and semi‐natural habitats and reducing human disturbance. However, whether breeding birds vulnerable to nest predation can benefit from strict land management in the protected area is unclear. Here, we compare the nesting performance of two groups of a ground‐nesting shorebird, the Kentish plover (Charadrius alexandrinus), in the protected area (Liaohekou Natural Reserve, hereinafter PA), and the control non‐protected area (non‐PA) around the Liaohekou Natural Reserve, in the north of the Yellow Sea, China, and identify which environmental factors, such as nesting habitat and nest materials, influence the daily nest survival rate (DSR). We found similar nesting habitats in both study areas, dominated by bare land or Suaeda salsa grassland. However, DSR was lower in PA (0.91 ± 0.01) than in non‐PA (0.97 ± 0.01). Kentish plovers nesting in areas with vegetation cover experienced lower DSR than in bare lands in both areas, and nests built with materials of S. salsa sticks had the lowest DSR in the bare land. Data from infrared cameras confirmed relatively higher predator abundances and nest predation rates by nocturnal mammals, such as Eurasian badgers (Meles meles), in PA than in non‐PA, and this pattern was especially evident for plover nests located in S. salsa grassland. Our results suggest that Liaohekou Natural Reserve protected area may not necessarily provide safe nesting sites for Kentish plovers due to the abundance of generalist mammal nest predators. However, the PA includes about 80% of the nests from both locations. This means the contribution of the total number of successful nests continues to be much higher within PA, with the benefit for the species that this brings in terms of conservation. The variation and mechanisms underlying differences in the nest predator communities of PA and non‐PA deserve further study.

Abstract Human activities such as urbanization often has negative affects wildlife. However, urbanization can also be beneficial to some animals by providing suitable microhabitats. To test the impact of urbanization on cold-blooded animals, we first conducted a snake survey at a national nature reserve (Xianghai natural reserve) and an adjacent tourist bird park (Red-crowned Crane Park). We show high presence of Elaphe dione in the tourist park even with high human activities and predator population (the endangered, red-crowned crane, Grus japonensis). We then radio-tracked 20 individuals of E. dione, set seven camera traps, and recorded the temperature of the snakes and artificial structures in Crane Park to document their space use, activity, and thermal preference, respectively. Our results show E. dione preferred to use artificial facilities to shelter from their predators and for thermoregulation. The high number of rats from the camera traps indicate abundant prey items. Overall, E. dione appears to be adapted to modified habitats and may expand population size at the current study site.

China's coastal wetlands provide breeding, migration stopover, and wintering habitats for about 230 waterbird species, which is more than a quarter of all waterbirds in the world. Large-scale and high intensity human activities have resulted in serious loss and degradation of coastal wetlands over the past half century, causing population declines in many waterbirds. Through a literature review and expert surveys, this article reviews conservation measures taken in recent decades to protect waterbirds in China's coastal wetlands and provides recommendations for future conservation action from three aspects: policy and administration, habitat conservation and management, and multiparty participation. Over the past decades, many conservation legislation, regulations and action plans at the national level and more site-specific measures and interventions have been implemented, with notable improvement in the effectiveness in policy making and multi-stakeholder participation. Accordingly, some threats to waterbirds have been mitigated and many key sites for waterbirds have been designated as strictly protected nature reserves. However, some critical issues still remain, mostly related to habitat conservation and management, such as coastal wetland restoration, control of invasive Spartina alterniflora, control of environmental pollution, and improvement of artificial habitat quality. We highlight that protecting natural tidal wetlands and improving habitat quality are critical for the conservation of coastal waterbirds, especially those highly dependent on the intertidal wetlands. China has demonstrated strong commitment to ecological conservation and restoration for the future, in terms of both funding and policies for biodiversity and wetland ecosystems. It is important that this commitment to conserve coastal waterbirds is supported continuously by science- and evidence-based decisions and actions.

Evaluating the genetic status of threatened species is an essential task in conservation genetics. However, the genetic status of threatened species has been mostly evaluated through techniques that fail to estimate genetic diversity at the whole genomic level. Next generation sequencing can meet this demand, but high quality samples such as blood or muscle tissues are required. However, it is difficult to collect such samples from threatened species because sampling work may impact their health. Therefore, it is essential to design a workflow to evaluate the whole genomic status of threatened species using non-destructive sampling. Even though non-destructive sampling has been used in traditional barcoding technique, the barcoding technique cannot evaluate the whole genomic status. Brown Eared Pheasant (Crossoptilon mantchuricum) is an endangered species, with captive populations maintained in Taiyuan Zoo, China, and Europe. However, the genetic diversity, inbreeding pattern, and mutation load of these two populations are unclear. To uncover the genetic status of these two captive populations, we applied 2b-RAD technology to evaluate the genomic status of these populations using feathers as samples. The feathers could be collected by non-destructive sampling. The results indicate that the Taiyuan Zoo population has a lower genetic diversity and higher inbreeding coefficient than the European population. The Taiyuan Zoo population has lethal mutations when homozygous. The current project uses a non-destructive sampling technique to evaluate the whole genomic status of the two captive populations, providing a paradigm for conservation genetics, which will facilitate the development of conservation biology.

Abstract Background Animals need to adjust their vigilance strategies when foraging between physically contrasting vegetated and non-vegetated habitats. Vegetated habitats may pose a greater risk for some if vegetation characteristics function as a visual obstruction but benefit others if they serve as protective shelter. Variation in group size, presence of similar species, along with variation in environmental conditions and anthropogenic disturbance can also influence vigilance investment. Methods In this study, we quantified the vigilance behaviour of two large-bodied, sympatric migratory curlew species—Far Eastern Curlew (Numenius madagascariensis) and Eurasian Curlew (N. arquata)—in vegetated Suaeda salsa saltmarsh and non-vegetated mudflat habitat in Liaohekou National Nature Reserve, China. We used linear mixed models to examine the effects of habitat type, season, tide time, flock size (conspecific and heterospecific), and human disturbance on curlew vigilance investment. Results Both species spent a higher percentage of time under visual obstruction in S. salsa habitat compared to mudflat habitat but in response, only Far Eastern Curlew increased their percentage of vigilance time, indicating that visual obstruction in this habitat is only a concern for this species. There was no evidence that S. salsa vegetation served as a form of cryptic background colouration since neither species decreased their vigilance effect in S. salsa habitat in spring compared to the autumn migration season. The effect of curlew social environment (i.e. flock size) was habitat dependent since percentage of vigilance time by curlews in saltmarsh increased with both the number of individual curlews and number of other birds present, but not in mudflat habitat. Conclusions We conclude that both migratory curlew species exhibit a flexible vigilance adjustment strategy to cope with the different environmental and social conditions of adjacent and sharply contrasting coastal habitats, and that the trade-off between the risks of foraging and the abundance of prey may be a relatively common phenomenon in these and other shorebird populations.

Unraveling geographical modes of speciation processes has been a longstanding topic in biogeography. Divergence can be driven by factors operating on multiple spatial scales, such as geographical distance (isolation by distance, IBD), landscape resistance (isolation by resistance, IBR) and environmental heterogeneity (isolation by environment, IBE). However, it is challenging to assess the relative contributions of such factors, which are usually autocorrelated with each other. On the basis of ~294 K nuclear single‐nucleotide polymorphisms from 53 samples, we integrated population genomics, geographical information and environmental variables to delineate genetic differentiation in the common pheasant Phasianus colchicus across a longitudinal gradient in northern China. Generalized dissimilarity modeling (GDM) was used to analyze the relative importance of IBD, IBR and IBE. We found that the common pheasant in northern China was grouped into six genetic clusters, which was consistent with the taxonomic affinities. Genetic diversity changed along the longitudinal gradient, reaching its lowest level at the eastern edge of the Qinghai–Tibetan Plateau (QTP). The spatial pattern of gene flow suggested that the mountains surrounding the QTP and the mountains in central China have acted as geographical barriers impeding common pheasant dispersal. GDM analysis indicated that environmental heterogeneity is the most important driver explaining the lineage divergence, which supports the IBE model. These results suggest that multiple isolation mechanisms shaped genetic diversity and genomic divergence in this wide‐ranging bird species. Together, our results underscore the importance of leveraging genome‐wide variations and ecological modeling to facilitate a deeper understanding of population divergence processes.

Summary: Global biodiversity is facing serious threats. However, knowledge of the genomic consequences of recent rapid population declines of wild organisms is limited. Do populations experiencing recent rapid population decline have the same genomic status as wild populations that experience long-term declines? Yellow-breasted Bunting (Emberiza aureola) is a critically endangered species that has been experiencing a recent rapid population decline. To answer the question, we assembled and annotated the whole genome of Yellow-breasted Bunting. Furthermore, we found high genetic diversity, low linkage disequilibrium, and low proportion of long runs of homozygosity in Yellow-breasted Bunting, suggesting that the populations following recent rapid declines have different genomic statuses from the population that experienced long-term population decline.

Abstract In this study, we reported a case of insect‐plant‐bird interactions under climate warming. With a succession of warmer winters from 2013 to 2015, successive outbreaks of the moth Pantana phyllostachysae, a common defoliator for most bamboo species, occurred in the Wawushan Nature Reserve of Southwest China, leading to a rapid altitudinal range expansion from 1650 to 2050 m in P. phyllostachysae. The bamboo Chimonobambusa szechuanensis that is largely distributed at moderate altitudes consequently suffered much loss. Accumulated infested area of C. szechuanensis within the reserve during the 3 years covered ~90% of the suitable breeding habitats of Emei Shan Liocichla Liocichla omeiensis, a threatened songbird preferring to nest in the bamboo, which led to diversified nesting‐plant selection and a significant reduction in nesting success of the babbler. Our findings provide new evidence of the plasticity of avian breeding behavior, and of the impact of climate change on ecological communities through multi‐species interactions. The study has important conservation implications.

Abstract Background Understanding how species diversify is a long-standing question in biology. The allopatric speciation model is a classic hypothesis to explain the speciation process. This model supposes that there is no gene flow during the divergence process of geographically isolated populations. On the contrary, the speciation with gene flow model supposes that gene flow does occur during the speciation process. Whether allopatric species have gene flow during the speciation process is still an open question. Methods We used the genetic information from 31 loci of 24 Chinese Bamboo Partridges (Bambusicola thoracicus) and 23 Taiwan Bamboo Partridges (B. sonorivox) to infer the gene flow model of the two species, using the approximate Bayesian computation (ABC) model. The ecological niche model was used to infer the paleo-distribution during the glacial period. We also tested whether the two species had a conserved ecological niche by means of a background similarity test. Results The genetic data suggested that the post-divergence gene flow between the two species was terminated before the mid-Pleistocene. Furthermore, our ecological niche modeling suggested that their ecological niches were highly conserved, and that they shared an overlapping potential distribution range in the last glacial maximum. Conclusions The allopatric speciation model cannot explain the speciation process of the two Bamboo Partridges. The results of this study supported a scenario in which speciation with gene flow occurring between the allopatric species and have contributed to our understanding of the speciation process.

In order to provide more scientific guidance for wetland bird protection, this study addressed the dynamics of the bird community sorted by ecotypes, classifications and threat categories from 2015 to 2019, and non-metric multidimensional scaling analysis, generalized additive models and the Mantel test were used to examine the relationships between bird communities and habitat types. The results showed that: (1) The abundance of birds peaked in 2017 at 88,258 individuals and then declined. Moreover, there was an inverse trend between species richness and abundance of birds, meaning greater abundance is associated with fewer species. (2) Swimming birds were dominant ecotypes and Anseriformes possessed the highest abundance. It was noteworthy that the abundance of critically endangered birds (Aythya baeri and Grus leucogeranus) and the species richness of endangered birds increased. (3) Building land and farmland had dominant impacts on the composition of bird community. Wading birds and birds in Gruiformes were significantly impacted by building land and farmland, and near threatened species were substantially influenced by farmland. Therefore, maintaining good connectivity between protected areas and surrounding areas is one of the best ways to effectively manage biodiversity of the target area. This research may provide a broader insight for coastal wetland bird habitat management and bird diversity preservation.

Abstract In this study, we report an unusual homing behavior of the Sichuan Partridge (Arborophila rufipectus) at the Laojunshan National Nature Reserve, Sichuan Province, China. Hen Sichuan Partridges led the chicks back to the nests where they hatched in the evening and roosted there over night. This behavior lasted 6.7 ± 4.3 nights (range = 1–15; n = 13) after the chicks hatched. At this stage, the hens became very vigilant to predators and human disturbance. If disturbed, they often abandoned the nests immediately and no longer returned thereafter. The ambient temperature at night during the early brooding period of Sichuan Partridge at our study site was ~ 12.4 °C. Our findings suggest that hen Sichuan Partridges may make trade-offs between nest predation risks versus the thermoregulatory needs of their young.

Abstract For migratory birds that specialize on particular benthic macroinvertebrate species, the timing of migration is critical since prey availability may be temporally limited and a function of local ambient temperature. Hence, variation in local ambient temperature can influence the diet composition of migrant birds, and, consequently, they may be constrained by which stopover and wintering sites they are able to utilize during periods of colder temperatures. Here, we use fecal analysis, observer‐based population counts, digital video recordings, and temperature data to test five predictions regarding the influence of local ambient temperature on the activity and availability of mudflat crabs—a key prey resource at three staging/wintering sites in eastern China, for migratory Red‐crowned cranes (Grus japonensis) and how this subsequently influences crane diet and use of wetland sites. Pearson's correlations and generalized linear models revealed that mudflat crabs became significantly more surface active with increasing burrow ambient temperature. Piecewise regression analysis revealed that crab surface activity was largely limited to a burrow ambient temperature threshold between 12 and 13℃ after which activity significantly increased. Crab activity declining temporally during the crane's autumn migration period but increased during spring migration. Crabs accounted for a significant proportion of crane diet at two of three sites; however, the frequency of crab remains was significantly different between sites, and between autumn and spring migration. Analyses of crane count data revealed a degree of congruence between the migration timing of Red‐crowned cranes with periods of warmer ambient temperature, and a significant, positive correlation between the percentage of crab remains in crane feces and site ambient temperature. Collectively, our data suggest that temperature‐related mudflat crab activity may provide an important time window for migratory Red‐crowned cranes to utilize critical stopover sites and the crabs’ food resources.

Abstract Background The allocation of resources between offspring size and number is a central question of life-history theory. Although several studies have tested the existence of this trade-off, few studies have investigated how environmental variation influences the allocation of resources to offspring size and offspring number. Additionally, the relationship between population dynamics and the offspring size and number allocation is far less understood. Methods We investigate whether resource allocation between egg size and clutch size is influenced by the ambient temperature and whether it may be related to apparent nest survival rate. We measured 1548 eggs from 541 nests of two closely related shorebird species, the Kentish Plover (Charadrius alexandrinus) and the White-faced Plover (C. dealbatus) in China, in four populations that exhibit contrasting ambient environments. We weighed females, monitored nest survival, and calculated the variance of ambient temperature. Results Although we found that egg size and clutch size were all different between the four breeding populations, the reproductive investment (i.e. total clutch volume) was similar between populations. We also found that populations with a high survival rate had relatively larger eggs and a smaller clutch than populations with a low nest survival rate. The latter result is in line with a conservative/diversified bet-hedging strategy. Conclusions Our findings suggest that plovers may increasing fitness by investing fewer, larger or many, small according local nest survival rate to make a similar investment in reproduction, and thereby may have an impact on population demography.

Abstract Background Research activities have often been thought to potentially influence avian nesting success by increasing nest predation rates. Although recent studies of species building open nests and cavity nests suggest that research disturbance does not generally induce nest predation, whether it is also the case in species building domed-nests remains unknown. In birds, domed-nest species exist in about half of the passerine families, and research disturbance to the domed nests may differ from that to the nests of other types for their different nest structures. Methods We investigated if research activities affected nest predation rate by analyzing the relationships of the daily nest survival rate with the research activities at the egg and nestling stages of a domed-nest species, the Silver-throated Tit (Aegithalos glaucogularis). Results Our results showed that nest daily survival rate was significantly affected by the laying date and nest age during the egg stage, and by the hatching date only during the nestling stage. By contrast, there were no significant effects of research activities, in terms of visiting nests and filming nests, on the nest survival of the Silver-throated Tit at both the egg and nestling stages. Conclusions Our results coincide with the findings in species building other types of nests that research activities do not always have negative effects on avian nesting success.

Abstract Background Conserving migratory birds is challenging due to their reliance on multiple distant sites at different stages of their annual life cycle. The concept of “flyway”, which refers to all areas covered by the breeding, nonbreeding, and migrating of birds, provides a framework for international cooperation for conservation. In the same flyway, however, the migratory activities of the same species can differ substantially between seasons and populations. Clarifying the seasonal and population differences in migration is helpful for understanding migration ecology and for identifying conservation gaps. Methods Using satellite-tracking we tracked the migration of Whimbrels (Numenius phaeopus variegatus) from nonbreeding sites at Moreton Bay (MB) and Roebuck Bay (RB) in Australia in the East Asian–Australasian Flyway. Mantel tests were used to analyze the strength of migration connectivity between the nonbreeding and breeding sites of MB and RB populations. Welch’s t test was used to compare the migration activities between the two populations and between northward and southward migration. Results During northward migration, migration distance and duration were longer for the MB population than for the RB population. The distance and duration of the first leg flight during northward migration were longer for the MB population than for the RB population, suggesting that MB individuals deposited more fuel before departing from nonbreeding sites to support their longer nonstop flight. The RB population exhibited weaker migration connectivity (breeding sites dispersing over a range of 60 longitudes) than the MB population (breeding sites concentrating in a range of 5 longitudes in Far Eastern Russia). Compared with MB population, RB population was more dependent on the stopover sites in the Yellow Sea and the coastal regions in China, where tidal habitat has suffered dramatic loss. However, RB population increased while MB population decreased over the past decades, suggesting that loss of tidal habitat at stopover sites had less impact on the Whimbrel populations, which can use diverse habitat types. Different trends between the populations might be due to the different degrees of hunting pressure in their breeding grounds. Conclusions This study highlights that conservation measures can be improved by understanding the full annual life cycle of movements of multiple populations of Whimbrels and probably other migratory birds.

Abstract Farmland birds are of conservation concerns around the world. In China, conservation management has focused primarily on natural habitats, whereas little attention has been given to agricultural landscapes. Although agricultural land use is intensive in China, environmental heterogeneity can be highly variable in some regions due to variations in crop and noncrop elements within a landscape. We examined how noncrop heterogeneity, crop heterogeneity, and noncrop features (noncrop vegetation and water body such as open water) influenced species richness and abundance of all birds as well as three functional groups (woodland species, agricultural land species, and agricultural wetland species) in the paddy‐dominated landscapes of Erhai water basin situated in northwest Yunnan, China. Birds, crop, and noncrop vegetation surveys in twenty 1 km × 1 km landscape plots were conducted during the winter season (from 2014 to 2015). The results revealed that bird community compositions were best explained by amounts of noncrop vegetation and compositional heterogeneity of noncrop habitat (Shannon–Wiener index). Both variables also had a positive effect on richness and abundance of woodland species. Richness of agricultural wetland species increased with increasing areas of water bodies within the landscape plot. Richness of total species was also greater in the landscapes characterized by larger areas of water bodies, high proportion of noncrop vegetation, high compositional heterogeneity of noncrop habitat, or small field patches (high crop configurational heterogeneity). Crop compositional heterogeneity did not show significant effects neither on the whole community (all birds) nor on any of the three functional groups considered. These findings suggest that total bird diversity and some functional groups, especially woodland species, would benefit from increases in the proportion of noncrop features such as woody vegetation and water bodies as well as compositional heterogeneity of noncrop features within landscape.

Abstract Background The value of contrast-enhanced ultrasound (CEUS) in differentiating between renal cell carcinoma (RCC) and angiomyolipoma (AML) was analyzed. The purpose of this study was to identify the independent indicators of CEUS for predicting RCC. Methods A total of 172 renal tumors (150 RCCs, 22 AMLs) in 165 patients underwent conventional ultrasound (CUS) and CEUS examinations before radical or partial nephrectomy, and the features on CUS and CEUS were analyzed. Results There were significant differences in echogenicity, blood flow signals in color Doppler flow imaging (CDFI), peak intensity, homogeneity of enhancement, wash in, wash out, and perilesional rim-like enhancement between RCC and AML (P

The Chinese Egret (Egretta eulophotes) is a globally threatened bird species living on the coast and islands of Liaoning, northeastern China, mainly in summer. To further protect the breeding population of Chinese Egrets, it is important to understand the current protection status of their distribution sites at pre-migration period and migration routes. Thirty-three individuals were tagged with satellite transmitters at Fantuo Island in Changhai and Xingren Island in Zhuanghe, Liaoning Province, northeastern China, in July of 2016, 2017, and 2018, to identify important distribution sites during the pre-migration period, as well as detailed migration routes. The results showed that coastal mudflats in Liaoning and the west coast of North Korea were important feeding and roosting sites for fledgling Chinese Egrets from August to September. The home range sizes in August were significantly larger than in September. The eastern coast from Shandong to Guangdong, as well as Taiwan, China, and Manila Bay and Galileo Islands in the Philippines, were important stopover sites during fall migration. Specifically, we found that the egrets’ autumn migration could be divided into four routes, i.e., sea-crossing migration (SCM), coastal migration (CM), inland migration (IM), and mixed migration (MM). The migration distance, timing, speed, and straightness of the four routes also differed. The SCM routes were the straightest, and had the fastest migration speed and shortest travel time, while the IM routes had the lowest straightness and speed, and the longest duration. Manila Bay and Bohol Island in the Philippines, the west coast of Tanintharyi in Myanmar, and the Zengwun River Estuary in Taiwan, China, were wintering sites. Our findings on the key distribution sites along pre-migration and fall migration routes, including some stopover sites, have important implications for the conservation of and global action plan development for the vulnerable Chinese Egret.

Pied Avocets (Recurvirostra avosetta) are common migratory shorebirds in the East Asian–Australasian Flyway. From 2019 to 2021, GPS/GSM transmitters were used to track 40 Pied Avocets nesting in northern Bohai Bay to identify annual routines and key stopover sites. On average, southward migration of Pied Avocets started on 23 October and arrived at wintering sites (mainly in the middle and lower reaches of the Yangtze River and coastal wetlands) in southern China on 22 November; northward migration started on 22 March with arrival at breeding sites on 7 April. Most avocets used the same breeding sites and wintering sites between years, with an average migration distance of 1124 ​km. There was no significant difference between sexes on the migration timing or distance in both northward and southward migration, except for the departure time from the wintering sites and winter distribution. The coastal wetland of Lianyungang in Jiangsu Province is a critical stopover site. Most individuals rely on Lianyungang during both northward and southward migration, indicating that species with short migration distances also heavily rely on a few stopover sites. However, Lianyungang lacks adequate protection and is facing many threats, including tidal flat loss. We strongly recommend that the coastal wetland of Lianyungang be designated as a protected area to effectively conserve the critical stopover site.

Temperate–tropical comparisons of avian life history traits are helpful to understand the different selective pressures placed on birds by different climate zones. Although there have been many comparative studies targeting multiple species in different regions, there are few comparative studies on the reproductive successes of the same species between tropical and temperate regions. In this study, we monitored the breeding activities of the Barn Swallow (Hirundo rustica) simultaneously at a single tropical site and a single temperate site in China, compared the breeding performances of the two populations, and investigated the effects of weather conditions on reproductive success separately. The clutch and brood sizes of the Barn Swallow at the topical site were significantly smaller than those at the temperate site. Furthermore, the breeding success of the Barn Swallow at the tropical site was significantly lower than that at the temperate site. The mean daytime temperature had a negative effect on the clutch size and brood size at both sites; it had a negative effect on nestling survival at the tropical site, but not the temperate site. This study will help us understand the adaptation strategies of widely distributed bird species in different environments, and how climate change will affect birds in different climate zones.

Concentrations of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) and polychlorinated biphenyls (PCBs) were investigated in muscle samples from common kestrels (Falco tinnunculus), eagle owls (Bubo bubo), and little owls (Athene noctua) collected in Beijing, China. The concentrations of PCDD/Fs were in the ranges of 22.7–5280, 67.5–1610, and 68.4–3180 pg/g lipid weight (lw), while levels of dioxin-like PCBs ranged from 4.91 to 1560, 8.08–294, and 28.2–3540 ng/g lw, in common kestrel, eagle owl, and little owl, respectively. The main PCDD/Fs congener was 2,3,4,7,8-PeCDF, and CB-153 dominated the seven indicator PCBs. PCB levels have shown a decreasing trend in the last decade for the common kestrel, but not for little owl in Beijing, which exhibited higher levels of pollutants and toxic equivalency (TEQ) values than the other two species. Concentrations of PCDD/Fs, dioxin-like PCBs, and indicator PCBs differed between fledgling and adult raptors for certain species. Raptors in this study generally had a higher TEQ than the no-observed-effect level in the literature, indicating significant exposure risks to PCDD/Fs and dioxin-like PCBs in raptors, especially in adult little owls.

Artificial wetlands such as coastal saltpans have replaced a number of coastal natural habitats worldwide and may have accommodated specific waterbird populations in the East Asian–Australasian Flyway (EAAF). The role of saltpans in the EAAF as foraging grounds for shorebirds is widely recognized, although their role as breeding grounds for waterbirds is very limited and contradictory. The Nanpu saltpans in northern Bohai Bay, China, are one of the largest saltpan complexes in the world. In this study, we monitored the nesting success (852 nests) of pied avocets (Recurvirostra avosetta) during three breeding seasons (2015, 2016, and 2018) in the Nanpu saltpans. The nest daily survival rate (DSR) was 0.970; hence, nest survival over the 27 exposure days was 44%. The apparent nest success was 51%. Surprisingly, 55% of nests failed during the laying period. Flooding and nest abandonment were the main causes of nest failure during both the laying and incubation periods. We found a strong positive relationship between the DSR and nest age, with nests that approached hatching having a greater probability of survival than freshly started nests. We also found a strong negative relationship between the DSR and precipitation, with the highest DSR observed for nests that experienced no precipitation. The DSR decreased over the course of the 71-days nesting season and followed a linear trend. The DSR was also density dependent and decreased slightly when nests were denser. A literature review showed that nest survival in the Nanpu saltpans was average compared with that of other studies and that nest success in artificial wetlands was significantly higher than that in natural wetlands or both habitats. Nevertheless, nest success decreased with the study date, suggesting that that breeding conditions for the pied avocet are worsening with time. The loss of saltpans could negatively affect the population of avocets and other ground-nesting waterbird species; therefore, conservation actions and research efforts should be strengthened to understand and conserve these functional wetlands for waterbirds.

Abstract Background Speciation with gene flow is an alternative to the nascence of new taxa in strict allopatric separation. Indeed, many taxa have parapatric distributions at present. It is often unclear if these are secondary contacts, e.g. caused by past glaciation cycles or the manifestation of speciation with gene flow, which hampers our understanding of how different forces drive diversification. Here we studied genetic, phenotypic and ecological aspects of divergence in a pair of incipient shorebird species, the Kentish (Charadrius alexandrinus) and the White-faced Plovers (C. dealbatus), shorebirds with parapatric breeding ranges along the Chinese coast. We assessed divergence based on molecular markers with different modes of inheritance and quantified phenotypic and ecological divergence in aspects of morphometric, dietary and climatic niches. Results Our integrative analyses revealed small to moderate levels of genetic and phenotypic distinctiveness with symmetric gene flow across the contact area at the Chinese coast. The two species diverged approximately half a million years ago in dynamic isolation with secondary contact occurring due to cycling sea level changes between the Eastern and Southern China Sea in the mid-late Pleistocene. We found evidence of character displacement and ecological niche differentiation between the two species, invoking the role of selection in facilitating divergence despite gene flow. Conclusion These findings imply that ecology can indeed counter gene flow through divergent selection and thus contributes to incipient speciation in these plovers. Furthermore, our study highlights the importance of using integrative datasets to reveal the evolutionary history and assist the inference of mechanisms of speciation.

Flight loss has occurred numerous times in bird evolution. Here, the authors examine convergent sites in the exonic and intronic sequences of 48 bird genomes, finding amino-acid changes in two genes, ATGL and ACOT7, with potential implications for a change in metabolism rather than anatomy.

Background Coastal saltpans are a common supratidal human-modified wetland habitat found within many coastal landscape mosaics. Commercial salt production and aquaculture practices often result in the creation of exposed coastal substrates that could provide suitable breeding habitat for waterbird populations; however, few studies have quantified waterbird breeding success in these artificial wetlands. Methods Here we examine the nesting behavior of the Gull-billed tern (Gelochelidon nilotica) breeding in the Nanpu coastal saltpans of Bohai Bay, Yellow Sea, China over three consecutive nesting seasons (2017–2019) by using nest survival model in Program MARK. Results The results revealed that nest survival of Gull-billed terns in coastal saltpans (0.697) was higher than previously published estimates from other regions, with an estimated daily survival rate (DSR) of 0.982 ± 0.001 (±95% CI). High nest survival was mainly attributed to low levels of human disturbances and low predation rates, while exposure to strong winds, flooding and silting were the main factors causing nest failure. Model-averaged estimates revealed that eggs laid in nests located on ‘habitat islands’ with feather or clam shell substrates were most likely to hatch. Initiation date, nest age, clutch size and quadratic effects of nearest-neighbor distance, nearest distance to road and nearest distance to water were all significant predictors of nest success, but the nest survival declined overall from 2017 to 2019 due to the degradation and loss of breeding habitat anthropogenically caused by rising water levels. Discussion Coastal saltpans represent an alternative breeding habitat for the Gull-billed tern populations in Bohai Bay, but conservation management should prioritize flood prevention to improve the extent and quality of breeding habitat, concurrent with efforts to create further ‘habitat islands’ with suitable nesting substrate.

Abstract Background Galliformes are widely distributed throughout the world and economically important to humans as domesticated animals or gamebirds. They are at a unique position for advancing knowledge and techniques of wildlife conservation as the barometer of the status of applied ecology. Populations of many galliform species have declined mainly due to habitat loss and over-hunting. An assessment of knowledge of Galliformes could help to provide guidelines for future research and conservation strategies. Methods Using the Web of Science search engine, we conducted a literature review of galliform-related articles published from 1990 to 2016. We used the “research area” option to filter articles focused on the zoology, environmental sciences ecology, biodiversity conservation, forestry, behavioral sciences, reproductive biology, biochemistry and molecular biology, cell biology, genetics and heredity, evolutionary biology, physiology and developmental biology. We then checked duplication based on the title, abstract and full text. In addition, we examined the reference lists of selected studies to include the publications that were missed by above searching. Results We retained 1874 articles related to the Galliformes from the initial 243,128 publications that were found. About 91.4% focused on one or two species, and 85.0% were conducted within a short duration, typically 1–2 years. The majority of the articles concentrated on macroscopic ecology (55.5%), mainly focusing on habitat selection or habitat use. With recent advances of molecular biology, the studies of taxonomy and phylogenetics rose quickly in last two decades. The study of physiology and biochemistry was no longer limited to simple description but expanded to the mechanisms of phenotype and micro-evolutionary potential. An additional area receiving increasing attention is the conservation of Galliformes, with the assessment of the conservation status and conservation management effectiveness of Galliformes (e.g. species diversity and genetic diversity) becoming the focus. Conclusions The studies on Galliformes have made great achievements since 1990, but there are still gaps, particularly in macroscopic ecology, molecular genetics, and conservation. There is an urgent need to enhance long-term monitoring and analysis of population dynamics, and applying different disciplines to galliform conservation. Moreover, life history information of many galliform species is still lacking, which has hindered conservation efforts and effectiveness. In addition, multidiscipline studies and new technologies are not common for galliform studies, and should be encouraged.

Understanding how incipient species are maintained with gene flow is a fundamental question in evolutionary biology. Whole genome sequencing of multiple individuals holds great potential to illustrate patterns of genomic differentiation as well as the associated evolutionary histories. Kentish (Charadrius alexandrinus) and the white-faced (C. dealbatus) plovers, which differ in their phenotype, ecology and behavior, are two incipient species and parapatrically distributed in East Asia. Previous studies show evidence of genetic diversification with gene flow between the two plovers. Under this scenario, it is of great importance to explore the patterns of divergence at the genomic level and to determine whether specific regions are involved in reproductive isolation and local adaptation. Here we present the first population genomic analysis of the two incipient species based on the de novo Kentish plover reference genome and resequenced populations. We show that the two plover lineages are distinct in both nuclear and mitochondrial genomes. Using model-based coalescence analysis, we found that population sizes of Kentish plover increased whereas white-faced plovers declined during the Last Glaciation Period. Moreover, the two plovers diverged allopatrically, with gene flow occurring after secondary contact. This has resulted in low levels of genome-wide differentiation, although we found evidence of a few highly differentiated genomic regions in both the autosomes and the Z-chromosome. This study illustrates that incipient shorebird species with gene flow after secondary contact can exhibit discrete divergence at specific genomic regions and provides basis to further exploration on the genetic basis of relevant phenotypic traits.

Suaeda salsa saltmarshes are an important coastal wetland habitat of China’s northern Yellow Sea, which plays a critical role in sequestering carbon (blue carbon), protecting shorelines, maintaining biodiversity, and has substantial economic value (e.g., ecotourism). However, the area of S. salsa has been rapidly declining due to several different threats from reclamation and invasive species that impact its natural succession. Here, we map the changes in the distribution of the S. salsa saltmarshes along the northern Yellow Sea of China (NYSC) at 5-year intervals by applying the supervised maximum likelihood method to analyze Landsat images from 1988 to 2018 and investigate the potential impact of three important factors on habitat change by analyzing the temporal changes in S. salsa saltmarshes with other land covers. S. salsa saltmarsh areas have decreased by 63% (264 km2 ha to 99 km2), and the average loss of S. salsa saltmarshes was 5.5 km2/year along the NYSC over the past three decades. There have been many dramatic declines in the two main distribution areas of S. salsa saltmarshes with a 77% loss of habitat area in Liaodong Bay (from 112 km2 to 26 km2) and a 52% loss in the Yellow River Delta wetland-Guangli-Zhima estuarine wetland (from 137 km2 to 65 km2). Land reclamation is the most important impact factor in the loss of S. salsa saltmarshes, while there have been limited effects of natural succession and smooth cordgrass (Spartina alterniflora) invasion. In light of the important ecological services and economic value of the S. salsa habitat, emergency conservation actions (e.g., habitat restoration, strictly supervision) are needed to limit the rapid habitat loss, which should include the immediate cessation of extensive land reclamation along the NYSC.

Abstract Background The Emei Shan Liocichla (Liocichla omeiensis) is an endemic bird species to southwestern China with a small geographic range. However, little was known about the genetic status of this threatened species. Methods We applied restriction-site-associated DNA sequencing (RAD-Seq) for rapid mass identification of microsatellite markers of the Emei Shan Liocichla. Results A total of 11,564 microsatellite sequences were obtained, 600 random loci were designed for screening and 24 polymorphic microsatellite loci were selected for further validation. The average allele number, average observed heterozygosity and average expected heterozygosity were relatively low in our samples, which were 6.08, 0.6618 and 0.7048, respectively, indicating that the Emei Shan Liocichla might have lost some genetic diversity. Further analyses suggested that the populations distributed on two mountains (Daxiangling and Xiaoliangshan) showed a modest degree of genetic differentiation. Conclusions These novel microsatellite markers provided valuable preliminary knowledge regarding the genetic status of the Emei Shan Liocichla and can be useful in further studies, as well as in the management and conservation of this species.

Understanding the relationships between nesting habitat quality and predation risk is essential for developing appropriate conservation management for threatened species. This is particularly relevant where anthropogenic pressures could decouple the environmental cues used by birds to assess nesting habitat quality from increased predation risk. In this study, we conducted a series of surveys and nest experiments to examine the nest predation rates of Reed Parrotbill (Paradoxornis heudei) a passerine bird between inland and tidal reed‐bed wetland habitats, at Yellow River Delta National Nature Reserve, Eastern China during 2008, and 2010–2012. We found significant differences in the habitat structural characteristics between the two adjacent wetland habitats that are critical for Reed Parrotbill nest‐site selection. Experimental trials using recently constructed and abandoned Reed Parrotbill nests as ‘artificial nests, quail eggs and predator‐exclusion measures, revealed that tidal mudflat crab (Helice tientsinensis) was the primary cause of Reed Parrotbill egg predation in tidal reed‐bed habitat. Annual predation rates of real nests from inland reed‐bed habitat varied from 35% to 68%, and predation rates of artificial nests were much lower than those from real nests. Pitfall sampling revealed that the abundance of tidal mudflat crabs was significantly higher in tidal reed‐bed habitat. Our data suggested that Reed Parrotbills breeding in tidal reed‐bed habitats may be highly vulnerable due to extremely high rates of nest predation (up to 100%), caused primarily by the high density of tidal mudflat crabs. The incongruence between nest‐site habitat preference and nest survival indicated an ecological trap scenario, which requires further studies on its proximate and ultimate causes as well as the development of effective conservation management for the Reed Parrotbill.

Galliform birds (relatives of the chicken and turkey) have attracted substantial attention due to their importance to society and value as model systems. This makes understanding the evolutionary history of Galliformes, especially the species-rich family Phasianidae, particularly interesting and important for comparative studies in this group. Previous studies have differed in their conclusions regarding galliform phylogeny. Some of these studies have suggested that specific clades within this order underwent rapid radiations, potentially leading to the observed difficulty in resolving their phylogenetic relationships. Here we presented analyses of six nuclear intron sequences and two mitochondrial regions, an amount of sequence data larger than many previous studies, and expanded taxon sampling by collecting data from 88 galliform species and four anseriform outgroups. Our results corroborated recent studies describing relationships among the major families, and provided further evidence that the traditional division of the largest family, the Phasianidae into two major groups ("pheasants" and "partridges") is not valid. Within the Phasianidae, relationships among many genera have varied among studies and there has been little consensus for the placement of many taxa. Using this large dataset, with substantial sampling within the Phasianidae, we obtained strong bootstrap support to confirm some previously hypothesized relationships and we were able to exclude others. In addition, we added the first nuclear sequence data for the partridge and quail genera Ammoperdix, Caloperdix, Excalfactoria, and Margaroperdix, placing these taxa in the galliform tree of life with confidence. Despite the novel insights obtained by combining increased sampling of taxa and loci, our results suggest that additional data collection will be necessary to solve the remaining uncertainties.

Understanding the historical dynamics of animal species is critical for accurate prediction of their response to climate changes. During the late Quaternary period, Southeast Asia had a larger land area than today due to lower sea levels, and its terrestrial landscape was covered by extensive forests and savanna. To date, however, the distribution fluctuation of vegetation and its impacts on genetic structure and demographic history of local animals during the Last Glacial Maximum (LGM) are still disputed. In addition, the responses of animal species on Hainan Island, located in northern Southeast Asia, to climate changes during the LGM are poorly understood. Here, we combined phylogeographic analysis, paleoclimatic evidence, and species distribution models to examine the response of the flightless Hainan Partridge (Arborophila ardens) to climate change. We concluded that A. ardens survived through LGM climate changes, and its current distribution on Hainan Island was its in situ refuge. Range model results indicated that A. ardens once covered a much larger area than its current distribution. Demographic history described a relatively stable pattern during and following the LGM. In addition, weak population genetic structure suggests a role in promoting gene flow between populations with climate-induced elevation shifts. Human activities must be considered in conservation planning due to their impact on fragmented habitats. These first combined data for Hainan Partridge demonstrate the value of paired genetic and SDMs study. More related works that might deepen our understanding of the responses of the species in Southeast Asia to late Quaternary Climate are needed.

Although a number of studies have assessed the effects of geological and climatic changes on species distributions in East Asian, we still have limited knowledge of how these changes have impacted avian species in south-western and southern China. Here, we aim to study paleo-climatic effects on an East Asian bird, two subspecies of black-throated tit (A. c. talifuensis-concinnus) with the combined analysis of phylogeography and Ecological Niche Models (ENMs). We sequenced three mitochondrial DNA markers from 32 populations (203 individuals) and used phylogenetic inferences to reconstruct the intra-specific relationships among haplotypes. Population genetic analyses were undertaken to gain insight into the demographic history of these populations. We used ENMs to predict the distribution of target species during three periods; last inter-glacial (LIG), last glacial maximum (LGM) and present. We found three highly supported, monophyletic MtDNA lineages and different historical demography among lineages in A. c. talifuensis-concinnus. These lineages formed a narrowly circumscribed intra-specific contact zone. The estimated times of lineage divergences were about 2.4 Ma and 0.32 Ma respectively. ENMs predictions were similar between present and LGM but substantially reduced during LIG. ENMs reconstructions and molecular dating suggest that Pleistocene climate changes had triggered and shaped the genetic structure of black-throated tit. Interestingly, in contrast to profound impacts of other glacial cycles, ENMs and phylogeographic analysis suggest that LGM had limited effect on these two subspecies. ENMs also suggest that Pleistocene climatic oscillations enabled the formation of the contact zone and thus support the refuge theory.