1. Automatic detection of retinal regions using fully convolutional networks for diagnosis of abnormal maculae in optical coherence tomography images
- Author
-
Zhongyang Sun and Yankui Sun
- Subjects
Paper ,retina optical coherence tomography ,Databases, Factual ,genetic structures ,Computer science ,Biomedical Engineering ,Image processing ,Sensitivity and Specificity ,01 natural sciences ,Macular Edema ,Pattern Recognition, Automated ,Imaging ,Diabetes Complications ,010309 optics ,Biomaterials ,Automation ,Macular Degeneration ,Optical coherence tomography ,Image Interpretation, Computer-Assisted ,0103 physical sciences ,medicine ,Humans ,fully convolutional networks ,Macula Lutea ,Segmentation ,Diagnosis, Computer-Assisted ,image segmentation ,Diabetic Retinopathy ,Contextual image classification ,medicine.diagnostic_test ,business.industry ,Reproducibility of Results ,Pattern recognition ,Image segmentation ,eye diseases ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Statistical classification ,Neural Networks, Computer ,sense organs ,Artificial intelligence ,Neural coding ,business ,Classifier (UML) ,Algorithms ,Tomography, Optical Coherence ,image classification - Abstract
In conventional retinal region detection methods for optical coherence tomography (OCT) images, many parameters need to be set manually, which is often detrimental to their generalizability. We present a scheme to detect retinal regions based on fully convolutional networks (FCN) for automatic diagnosis of abnormal maculae in OCT images. The FCN model is trained on 900 labeled age-related macular degeneration (AMD), diabetic macular edema (DME) and normal (NOR) OCT images. Its segmentation accuracy is validated and its effectiveness in recognizing abnormal maculae in OCT images is tested and compared with traditional methods, by using the spatial pyramid matching based on sparse coding (ScSPM) classifier and Inception V3 classifier on two datasets: Duke dataset and our clinic dataset. In our clinic dataset, we randomly selected half of the B-scans of each class (300 AMD, 300 DME, and 300 NOR) for training classifier and the rest (300 AMD, 300 DME, and 300 NOR) for testing with 10 repetitions. Average accuracy, sensitivity, and specificity of 98.69%, 98.03%, and 99.01% are obtained by using ScSPM classifier, and those of 99.69%, 99.53%, and 99.77% are obtained by using Inception V3 classifier. These two classification algorithms achieve 100% classification accuracy when directly applied to Duke dataset, where all the 45 OCT volumes are used as test set. Finally, FCN model with or without flattening and cropping and its influence on classification performance are discussed.
- Published
- 2019
- Full Text
- View/download PDF