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The Neolithic transition, defined as the shift from a hunter-gatherer economy into the one based on agricultural activities, is assumed to have resulted in extensive human population growths. Despite major progress has been made by archaeologists in the use of archaeobotanic data to reconstruct a reliable time frame of Neolithic transition in China, the roles played by Neolithic transition in East Asian demographic history are not yet well understood. This paper offers a perspective on the issues regarding when and how the East Asian population expanded and its consequences. Considering diverse genetic evidences, we revealed that, in East Asia, there were at least two population expansion events in the Paleolithic Era and notably, the latter Paleolithic expansion and climate improvement after Last Glacial Maximum (LGM, about 15 ka) might together facilitate the emergence of agriculture. In comparison to the Paleolithic expansion, Neolithic expansion had its own characteristics, such as stronger expansion dynamics and sex-specific expansion pattern. According to the Y-chromosome-based tree in our recent studies, we found strong signals of partial paternal lineage expansions during or after the Neolithic transition, for instance, O3a2c1a-F5 (Oα), O3a2c1-F46 (Oβ), O3a1c1-F11 (Oγ), C3a1-F2613 (Cα), Q1a1-M120 (Qα), and O1a1a1-F78 (Oδ), suggesting the influence of a strong bottleneck caused by cultural changes. Finally, we discussed the relationship between major East Asian paternal lineages and linguistic families, as well as early archeology cultures, linking the Daxi culture to the modern Hmong-Mien populations, the Liangzhu Culture and/or Songze Culture to modern Austronesian and Daic populations, and Yangshao Culture, Dawenkou Culture and/or Longshan Culture, and Hongshan Culture to modern Sino-Tibetan populations. [ABSTRACT FROM AUTHOR]

Due to the formation of the Qiongzhou Strait by climate change and marine transition, Hainan island was isolated from the mainland southern China during the Last Glacial Maximum. Hainan island, located at the southernmost part of China and separated from the Leizhou Peninsula by the Qiongzhou Strait, laid on one of the modern human northward migration routes from Southeast Asia to East Asia. The Hlai language-speaking Li minority, the second largest population after Han Chinese in Hainan island, is the direct descendants of the initial migrants in Hainan island and has unique ethnic properties and derived characteristics; however, the forensic-associated studies on Hainan Li population are still insufficient. Hence, 136 Hainan Li individuals were genotyped in this study using the MPS-based ForenSeq™ DNA Signature Prep Kit (DNA Primer Set A, DPMA) to characterize the forensic genetic polymorphism landscape, and DNA profiles were obtained from 152 different molecular genetic markers (27 autosomal STRs, 24 Y-STRs, 7 X-STRs, and 94 iiSNPs). A total of 419 distinct length variants and 586 repeat sequence sub-variants, with 31 novel alleles (at 17 loci), were identified across the 58 STR loci from the DNA profiles of Hainan Li population. We evaluated the forensic characteristics and efficiencies of DPMA, demonstrating that the STRs and iiSNPs in DPMA were highly polymorphic in Hainan Li population and could be employed in forensic applications. In addition, we set up three datasets, which included the genetic data of (i) iiSNPs (27 populations, 2640 individuals), (ii) Y-STRs (42 populations, 8281 individuals), and (iii) Y haplogroups (123 populations, 4837 individuals) along with the population ancestries and language families, to perform population genetic analyses separately from different perspectives. In conclusion, the phylogenetic analyses indicated that Hainan Li, with a southern East Asia origin and Tai-Kadai language-speaking language, is an isolated population relatively. But the genetic pool of Hainan Li influenced by the limited gene flows from other Tai-Kadai populations and Hainan populations. Furthermore, the establishment of isolated population models will be beneficial to clarify the exquisite population structures and develop specific genetic markers for subpopulations in forensic genetic fields. [ABSTRACT FROM AUTHOR]

Background: Previous studies have suggested that the human Y-chromosome haplogroup Q1a1a-M120, a widespread paternal lineage in East Asian populations, originated in South Siberia. However, much uncertainty remains regarding the origin, diversification, and expansion of this paternal lineage. Aim: To explore the origin and diffusion of paternal Q-M120 lineages in East Asia. Subjects and methods: The authors generated 26 new Y chromosome sequences of Q-M120 males and co-analysed 45 Y chromosome sequences of this haplogroup. A highly-revised phylogenetic tree of haplogroup Q-M120 with age estimates was reconstructed. Additionally, a comprehensive phylogeographic analysis of this lineage was performed including 15,007 samples from 440 populations in eastern Eurasia. Results: An ancient connection of this lineage with populations in Siberia was revealed. However, this paternal lineage experienced an in-situ expansion between 5000 and 3000 years ago in northwestern China. Ancient populations with high frequencies of Q-M120 were involved in the formation of ancient Huaxia populations before 2000 years ago; this haplogroup eventually became one of the founding paternal lineages of modern Han populations. Conclusion: This study provides a clear pattern of the origin and diffusion process of haplogroup Q1a1a-M120, as well as the role of this paternal lineage during the formation of ancient Huaxia populations and modern Han populations. [ABSTRACT FROM AUTHOR]