18 results on '"Arvidsson, Ida"'
Search Results
2. Comparing a pre-defined versus deep learning approach for extracting brain atrophy patterns to predict cognitive decline due to Alzheimer’s disease in patients with mild cognitive symptoms
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Arvidsson, Ida, Strandberg, Olof, Palmqvist, Sebastian, Stomrud, Erik, Cullen, Nicholas, Janelidze, Shorena, Tideman, Pontus, Heyden, Anders, Åström, Karl, Hansson, Oskar, and Mattsson-Carlgren, Niklas
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- 2024
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3. Red blood cell-derived arginase release in hemolytic uremic syndrome
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Friberg, Niklas, Arvidsson, Ida, Tontanahal, Ashmita, Kristoffersson, Ann-Charlotte, Gram, Magnus, Kaplan, Bernard S., and Karpman, Diana
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- 2024
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4. Deep learning prediction of quantitative coronary angiography values using myocardial perfusion images with a CZT camera
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Arvidsson, Ida, Davidsson, Anette, Overgaard, Niels Christian, Pagonis, Christos, Åström, Kalle, Good, Elin, Frias-Rose, Jeronimo, Heyden, Anders, and Ochoa-Figueroa, Miguel
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- 2023
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5. An Artificial Intelligence–based Support Tool for Automation and Standardisation of Gleason Grading in Prostate Biopsies
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Marginean, Felicia, Arvidsson, Ida, Simoulis, Athanasios, Christian Overgaard, Niels, Åström, Kalle, Heyden, Anders, Bjartell, Anders, and Krzyzanowska, Agnieszka
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- 2021
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6. Artificial intelligence for detection of prostate cancer in biopsies during active surveillance.
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Arvidsson, Ida, Svanemur, Edvard, Marginean, Felicia, Simoulis, Athanasios, Overgaard, Niels Christian, Åström, Kalle, Heyden, Anders, Krzyzanowska, Agnieszka, and Bjartell, Anders
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PROSTATE cancer , *WATCHFUL waiting , *ARTIFICIAL intelligence , *PROSTATE biopsy , *EARLY detection of cancer , *PROSTATE cancer patients - Abstract
Objectives Patients and methods Results Conclusion To evaluate a cancer detecting artificial intelligence (AI) algorithm on serial biopsies in patients with prostate cancer on active surveillance (AS).A total of 180 patients in the Prostate Cancer Research International Active Surveillance (PRIAS) cohort were prospectively monitored using pre‐defined criteria. Diagnostic and re‐biopsy slides from 2011 to 2020 (n = 4744) were scanned and analysed by an in‐house AI‐based cancer detection algorithm. The algorithm was analysed for sensitivity, specificity, and for accuracy to predict need for active treatment. Prognostic properties of cancer size, prostate‐specific antigen (PSA) level and PSA density at diagnosis were evaluated.The sensitivity and specificity of the AI algorithm was 0.96 and 0.73, respectively, for correct detection of cancer areas. Original pathology report diagnosis was used as the reference method. The area of cancer estimated by the pathologists correlated highly with the AI detected cancer size (r = 0.83). By using the AI algorithm, 63% of the slides would not need to be read by a pathologist as they were classed as benign, at the risk of missing 0.55% slides containing cancer. Biopsy cancer content and PSA density at diagnosis were found to be prognostic of whether the patient stayed on AS or was discontinued for active treatment.The AI‐based biopsy cancer detection algorithm could be used to reduce the pathologists’ workload in an AS cohort. The detected cancer amount correlated well with the cancer length measured by the pathologist and the algorithm performed well in finding even small areas of cancer. To our knowledge, this is the first report on an AI‐based algorithm in digital pathology used to detect cancer in a cohort of patients on AS. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Adjusting for CSF Reference Proteins Improves Biomarker Accuracy.
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Karlsson, Linda, Arvidsson, Ida, Åstr, Kalle, Janelidze, Shorena, Palmqvist, Sebastian, Stomrud, Erik, Mattsson‐Carlgren, Niklas, and Hansson, Oskar
- Abstract
Background: CSF biomarkers are key AD descriptors, but the CSF volume as well as the production and clearance rates of proteins varies in individuals. Adjusting for reference proteins, which reflect these factors, might improve the accuracy of CSF biomarkers, similar to when normalizing CSF Aβ42 levels to Aβ40 levels. For other biomarkers, individual CSF dynamics are seldom adjusted for, which may result in disagreement with other techniques (e.g., PET). Additionally, this may contribute to inaccurate conclusions about CSF protein correlations that mainly exist due to high or low CSF dilution levels. The aim of this work is therefore to establish the use of CSF reference proteins to improve CSF AD biomarker accuracy. Method: We used measurements of 2944 CSF proteins in the Swedish BioFINDER‐2 cohort (n = 982, 80% train and 20% test). Reference protein candidates (reflecting CSF dilution levels without being related to any disease) were searched for in a data‐driven manner, using t‐distributed stochastic neighbor embedding (t‐SNE) and a semi‐supervised K‐means clustering algorithm. The final candidate proteins were evaluated in logistic regression models, using CSF P‐tau181 and CSF Aβ42 as main predictors of tau‐PET and amyloid‐PET, respectively. Result: Most proteins were associated with an individual dilution level, although at different strengths (Fig 1 and Fig 2e). From the different colorings of the t‐SNE space, proteins of similar expressions were placed nearby, creating areas of extra interest (yellow areas in subfigures 2c‐2h). The semi‐supervised K‐means algorithm highlighted an area (cluster 11) containing proteins with superior reference protein characteristics, from which single reference protein candidates were identified. All examined references (e.g., Aβ40, NTRK3, NTRK2, BLMH,CBLN4, PTPRN2 or PTPRS) outperformed using no reference for both the P‐tau181 and Aβ42 model (Figure 3). For P‐tau181, highest performance was achieved using CBLN4 (AUC = 0.944). For Aβ42, Aβ40 performed best as reference (AUC = 0.992). Conclusion: The individual CSF dilution level affects many CSF proteins. We describe several novel and previously suggested CSF reference proteins, which can significantly improve the accuracy of CSF biomarkers as key AD descriptors. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Shiga toxin signals via ATP and its effect is blocked by purinergic receptor antagonism
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Johansson, Karl E., Ståhl, Anne-Lie, Arvidsson, Ida, Loos, Sebastian, Tontanahal, Ashmita, Rebetz, Johan, Chromek, Milan, Kristoffersson, Ann-Charlotte, Johannes, Ludger, and Karpman, Diana
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- 2019
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9. IgG Binds Escherichia coli Serine Protease EspP and Protects Mice From E. coli O157:H7 Infection.
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Tontanahal, Ashmita, Sperandio, Vanessa, Kovbasnjuk, Olga, Loos, Sebastian, Kristoffersson, Ann-Charlotte, Karpman, Diana, and Arvidsson, Ida
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IMMUNOGLOBULIN G ,ESCHERICHIA coli O157:H7 ,HEMOLYTIC-uremic syndrome ,ESCHERICHIA coli ,THROMBOTIC thrombocytopenic purpura ,KIDNEY physiology - Abstract
Shiga toxin-producing Escherichia coli O157:H7 is a virulent strain causing severe gastrointestinal infection, hemolytic uremic syndrome and death. To date there are no specific therapies to reduce progression of disease. Here we investigated the effect of pooled immunoglobulins (IgG) on the course of disease in a mouse model of intragastric E. coli O157:H7 inoculation. Intraperitoneal administration of murine IgG on day 3, or both on day 3 and 6, post-inoculation improved survival and decreased intestinal and renal pathology. When given on both day 3 and 6 post-inoculation IgG treatment also improved kidney function in infected mice. Murine and human commercially available IgG preparations bound to proteins in culture filtrates from E. coli O157:H7. Bound proteins were extracted from membranes and peptide sequences were identified by mass spectrometry. The findings showed that murine and human IgG bound to E. coli extracellular serine protease P (EspP) in the culture filtrate, via the IgG Fc domain. These results were confirmed using purified recombinant EspP and comparing culture filtrates from the wild-type E. coli O157:H7 strain to a deletion mutant lacking espP. Culture filtrates from wild-type E. coli O157:H7 exhibited enzymatic activity, specifically associated with the presence of EspP and demonstrated as pepsin cleavage, which was reduced in the presence of murine and human IgG. EspP is a virulence factor previously shown to promote colonic cell injury and the uptake of Shiga toxin by intestinal cells. The results presented here suggest that IgG binds to EspP, blocks its enzymatic activity, and protects the host from E. coli O157:H7 infection, even when given post-inoculation. [ABSTRACT FROM AUTHOR]
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- 2022
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10. Apyrase decreases phage induction and Shiga toxin release from E. coli O157:H7 and has a protective effect during infection.
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Arvidsson, Ida, Tontanahal, Ashmita, Johansson, Karl, Kristoffersson, Ann-Charlotte, Kellnerová, Sára, Berger, Michael, Dobrindt, Ulrich, and Karpman, Diana
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- 2022
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11. Haemolytic uraemic syndrome.
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Karpman, Diana, Loos, Sebastian, Tati, Ramesh, and Arvidsson, Ida
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HEMOLYTIC-uremic syndrome ,ACUTE kidney failure ,THROMBOCYTOPENIA ,KIDNEY transplantation ,HEALTH outcome assessment - Abstract
Haemolytic uraemic syndrome (HUS) is defined by the simultaneous occurrence of nonimmune haemolytic anaemia, thrombocytopenia and acute renal failure. This leads to the pathological lesion termed thrombotic microangiopathy, which mainly affects the kidney, as well as other organs. HUS is associated with endothelial cell injury and platelet activation, although the underlying cause may differ. Most cases of HUS are associated with gastrointestinal infection with Shiga toxin-producing enterohaemorrhagic Escherichia coli (EHEC) strains. Atypical HUS (aHUS) is associated with complement dysregulation due to mutations or autoantibodies. In this review, we will describe the causes of HUS. In addition, we will review the clinical, pathological, haematological and biochemical features, epidemiology and pathogenetic mechanisms as well as the biochemical, microbiological, immunological and genetic investigations leading to diagnosis. Understanding the underlying mechanisms of the different subtypes of HUS enables tailoring of appropriate treatment and management. To date, there is no specific treatment for EHEC-associated HUS but patients benefit from supportive care, whereas patients with aHUS are effectively treated with anti-C5 antibody to prevent recurrences, both before and after renal transplantation. [ABSTRACT FROM AUTHOR]
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- 2017
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12. Early Terminal Complement Blockade and C6 Deficiency Are Protective in Enterohemorrhagic Escherichia coli-Infected Mice.
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Arvidsson, Ida, Rebetz, Johan, Loos, Sebastian, Herthelius, Maria, Kristoffersson, Ann-Charlotte, Englund, Elisabet, Chromek, Milan, and Karpman, Diana
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ESCHERICHIA coli O157:H7 , *LABORATORY mice , *COMPLEMENT activation , *RENAL biopsy , *PROTEIN deficiency , *WEIGHT loss - Abstract
Complement activation occurs during enterohemorrhagic Escherichia coli (EHEC) infection and may exacerbate renal manifestations. In this study, we show glomerular C5b-9 deposits in the renal biopsy of a child with EHEC-associated hemolytic uremic syndrome. The role of the terminal complement complex, and its blockade as a therapeutic modality, was investigated in a mouse model of E. coli O157:H7 infection. BALB/c mice were treated with monoclonal anti-C5 i.p. on day 3 or 6 after intragastric inoculation and monitored for clinical signs of disease and weight loss for 14 d. All infected untreated mice (15 of 15) or those treated with an irrelevant Ab (8 of 8) developed severe illness. In contrast, only few infected mice treated with anti-C5 on day 3 developed symptoms (three of eight, p < 0.01 compared with mice treated with the irrelevant Ab on day 3) whereas most mice treated with anti-C5 on day 6 developed symptoms (six of eight). C6-deficient C57BL/6 mice were also inoculated with E. coli O157:H7 and only 1 of 14 developed disease, whereas 10 of 16 wild-type mice developed weight loss and severe disease (p < 0.01). Complement activation via the terminal pathway is thus involved in the development of disease in murine EHEC infection. Early blockade of the terminal complement pathway, before the development of symptoms, was largely protective, whereas late blockade was not. Likewise, lack of C6, and thereby deficient terminal complement complex, was protective in murine E. coli O157:H7 infection. [ABSTRACT FROM AUTHOR]
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- 2016
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13. Shiga Toxin-Induced Complement-Mediated Hemolysis and Release of Complement-Coated Red Blood Cell-Derived Microvesicles in Hemolytic Uremic Syndrome.
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Arvidsson, Ida, Ståhl, Anne-lie, Hedström, Minola Manea, Kristoffersson, Ann-Charlotte, Rylander, Christian, Westman, Julia S., Storry, Jill R., Olsson, Martin L., and Karpman, Diana
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ESCHERICHIA coli , *HEMOLYSIS & hemolysins , *FLOW cytometry , *ECULIZUMAB , *LACTATE dehydrogenase - Abstract
Shiga toxin (Stx)-produdng Escherichia coli (STEC) cause hemolytic uremic syndrome (HUS). This study investigated whether Stx2 induces hemolysis and whether complement is involved in the hemolytic process. RBCs and/or RBC-derived microvesicles from patients with STEC-HUS (n = 25) were investigated for the presence of C3 and C9 by flow cytometry. Patients exhibited increased C3 deposition on RBCs compared with controls (p < 0.001), as well as high levels of C3- and C9-bearing RBC-derived microvesicles during the acute phase, which decreased after recovery. Stx2 bound to P1k and P2k phenotype RBCs, expressing high levels of the Pk Ag (globotriaosylceramide), the known Stx receptor. Stx2 induced the release of hemoglobin and lactate dehydrogenase in whole blood, indicating hemolysis. Stx2-induced hemolysis was not demonstrated in the absence of plasma and was inhibited by heat inactivation, as well as by the terminal complement pathway Ab eculizumab, the purinergic P2 receptor antagonist suramin, and EDTA. In the presence of whole blood or plasma/serum, Stx2 induced the release of RBC-derived microvesicles coated with C5b-9, a process that was inhibited by EDTA, in the absence of factor B, and by purinergic P2 receptor antagonists. Thus, complementcoated RBC-derived microvesicles are elevated in HUS patients and induced in vitro by incubation of RBCs with Stx2, which also induced hemolysis. The role of complement in Stx2-mediated hemolysis was demonstrated by its occurrence only in the presence of plasma and its abrogation by heat inactivation, EDTA, and eculizumab. Complement activation on RBCs could play a role in the hemolytic process occurring during STEC-HUS. [ABSTRACT FROM AUTHOR]
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- 2015
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14. A Novel Mechanism of Bacterial Toxin Transfer within Host Blood Cell-Derived Microvesicles.
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Ståhl, Anne-lie, Arvidsson, Ida, Johansson, Karl E., Chromek, Milan, Rebetz, Johan, Loos, Sebastian, Kristoffersson, Ann-Charlotte, Békássy, Zivile D., Mörgelin, Matthias, and Karpman, Diana
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BACTERIAL toxins , *MICROBIAL toxins , *BLOOD cells , *VESICLES (Cytology) , *ORGANELLES - Abstract
Shiga toxin (Stx) is the main virulence factor of enterohemorrhagic Escherichia coli, which are non-invasive strains that can lead to hemolytic uremic syndrome (HUS), associated with renal failure and death. Although bacteremia does not occur, bacterial virulence factors gain access to the circulation and are thereafter presumed to cause target organ damage. Stx was previously shown to circulate bound to blood cells but the mechanism by which it would potentially transfer to target organ cells has not been elucidated. Here we show that blood cell-derived microvesicles, shed during HUS, contain Stx and are found within patient renal cortical cells. The finding was reproduced in mice infected with Stx-producing Escherichia coli exhibiting Stx-containing blood cell-derived microvesicles in the circulation that reached the kidney where they were transferred into glomerular and peritubular capillary endothelial cells and further through their basement membranes followed by podocytes and tubular epithelial cells, respectively. In vitro studies demonstrated that blood cell-derived microvesicles containing Stx undergo endocytosis in glomerular endothelial cells leading to cell death secondary to inhibited protein synthesis. This study demonstrates a novel virulence mechanism whereby bacterial toxin is transferred within host blood cell-derived microvesicles in which it may evade the host immune system. [ABSTRACT FROM AUTHOR]
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- 2015
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15. The Antimicrobial Peptide Cathelicidin Protects Mice from Escherichia coli O157:H7-Mediated Disease.
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Chromek, Milan, Arvidsson, Ida, and Karpman, Diana
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CATHELICIDIN antimicrobial peptide , *ESCHERICHIA coli diseases , *KIDNEY diseases , *LABORATORY mice , *ANEMIA , *HEMOLYTIC-uremic syndrome treatment - Abstract
This study investigated the role of the antimicrobial peptide cathelicidin in Escherichia coli O157:H7 infection and subsequent renal damage. Mouse and human cathelicidin, CRAMP and LL-37, respectively, killed E. coli O157:H7 in vitro. Intestines from healthy wild-type (129/SvJ) and cathelicidin-knock-out (Camp-/-) mice were investigated, showing that cathelicidin-deficient mice had a thinner colonic mucus layer compared with wild-type mice. Wild-type (n = 11) and cathelicidin-knock-out (n = 11) mice were inoculated with E. coli O157:H7. Cathelicidin-deficient animals exhibited higher fecal counts of E. coli O157:H7 and bacteria penetrated the mucus forming attaching-and-effacing lesions to a much higher extent than in wild-type animals. Cathelicidin knock-out mice developed symptoms (9/11) as well as anemia, thrombocytopenia and extensive renal tubular damage while all cathelicidin-producing mice remained asymptomatic with normal laboratory findings. When injected with Shiga toxin intraperitoneally, both murine strains developed the same degree of renal tubular damage and clinical disease indicating that differences in sensitivity to infection between the murine strains were related to the initial intestinal response. In conclusion, cathelicidin substantially influenced the antimicrobial barrier in the mouse colon mucosa. Cathelicidin deficiency lead to increased susceptibility to E. coli O157:H7 infection and subsequent renal damage. Administration of cathelicidin or stimulation of endogenous production may prove to be novel treatments for E. coli O157:H7-induced hemolytic uremic syndrome. [ABSTRACT FROM AUTHOR]
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- 2012
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16. Annexin Induces Cellular Uptake of Extracellular Vesicles and Delays Disease in Escherichia coli O157:H7 Infection.
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Tontanahal, Ashmita, Arvidsson, Ida, and Karpman, Diana
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ESCHERICHIA coli diseases ,ESCHERICHIA coli O157:H7 ,EXTRACELLULAR vesicles ,HEMOLYTIC-uremic syndrome ,ANNEXINS ,LABORATORY mice ,RENAL circulation - Abstract
Enterohemorrhagic Escherichia coli secrete Shiga toxin and lead to hemolytic uremic syndrome. Patients have high levels of circulating prothrombotic extracellular vesicles (EVs) that expose phosphatidylserine and tissue factor and transfer Shiga toxin from the circulation into the kidney. Annexin A5 (AnxA5) binds to phosphatidylserine, affecting membrane dynamics. This study investigated the effect of anxA5 on EV uptake by human and murine phagocytes and used a mouse model of EHEC infection to study the effect of anxA5 on disease and systemic EV levels. EVs derived from human whole blood or HeLa cells were more readily taken up by THP-1 cells or RAW264.7 cells when the EVs were coated with anxA5. EVs from HeLa cells incubated with RAW264.7 cells induced phosphatidylserine exposure on the cells, suggesting a mechanism by which anxA5-coated EVs can bind to phagocytes before uptake. Mice treated with anxA5 for six days after inoculation with E. coli O157:H7 showed a dose-dependent delay in the development of clinical disease. Treated mice had lower levels of EVs in the circulation. In the presence of anxA5, EVs are taken up by phagocytes and their systemic levels are lower, and, as EVs transfer Shiga toxin to the kidney, this could postpone disease development. [ABSTRACT FROM AUTHOR]
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- 2021
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17. Chronic kidney disease: Role of suPAR in APOL1-associated kidney disease.
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Karpman, Diana, Ståhl, Anne-lie, Arvidsson, Ida, and Carney, Ellen F
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KIDNEY diseases , *CELL communication , *VESICLES (Cytology) , *NEURODEGENERATION , *CELL proliferation - Abstract
Extracellular vesicles, such as exosomes and microvesicles, are host cell-derived packages of information that allow cell-cell communication and enable cells to rid themselves of unwanted substances. The release and uptake of extracellular vesicles has important physiological functions and may also contribute to the development and propagation of inflammatory, vascular, malignant, infectious and neurodegenerative diseases. This Review describes the different types of extracellular vesicles, how they are detected and the mechanisms by which they communicate with cells and transfer information. We also describe their physiological functions in cellular interactions, such as in thrombosis, immune modulation, cell proliferation, tissue regeneration and matrix modulation, with an emphasis on renal processes. We discuss how the detection of extracellular vesicles could be utilized as biomarkers of renal disease and how they might contribute to disease processes in the kidney, such as in acute kidney injury, chronic kidney disease, renal transplantation, thrombotic microangiopathies, vasculitides, IgA nephropathy, nephrotic syndrome, urinary tract infection, cystic kidney disease and tubulopathies. Finally, we consider how the release or uptake of extracellular vesicles can be blocked, as well as the associated benefits and risks, and how extracellular vesicles might be used to treat renal diseases by delivering therapeutics to specific cells. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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18. Extracellular vesicles in renal disease.
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Hartung, Erum A., Guay-Woodford, Lisa M., Karpman, Diana, Ståhl, Anne-Lie, and Arvidsson, Ida
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AUTOSOMAL recessive polycystic kidney , *KIDNEY function tests , *HEPATIC fibrosis , *HYPERTENSION , *GENETIC mutation - Abstract
Extracellular vesicles, such as exosomes and microvesicles, are host cell-derived packages of information that allow cell-cell communication and enable cells to rid themselves of unwanted substances. The release and uptake of extracellular vesicles has important physiological functions and may also contribute to the development and propagation of inflammatory, vascular, malignant, infectious and neurodegenerative diseases. This Review describes the different types of extracellular vesicles, how they are detected and the mechanisms by which they communicate with cells and transfer information. We also describe their physiological functions in cellular interactions, such as in thrombosis, immune modulation, cell proliferation, tissue regeneration and matrix modulation, with an emphasis on renal processes. We discuss how the detection of extracellular vesicles could be utilized as biomarkers of renal disease and how they might contribute to disease processes in the kidney, such as in acute kidney injury, chronic kidney disease, renal transplantation, thrombotic microangiopathies, vasculitides, IgA nephropathy, nephrotic syndrome, urinary tract infection, cystic kidney disease and tubulopathies. Finally, we consider how the release or uptake of extracellular vesicles can be blocked, as well as the associated benefits and risks, and how extracellular vesicles might be used to treat renal diseases by delivering therapeutics to specific cells. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
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