32 results on '"Bertolini, Edson"'
Search Results
2. A new and accurate qPCR protocol to detect plant pathogenic bacteria of the genus ‘Candidatus Liberibacter’ in plants and insects
- Author
-
de Chaves, María Quintana-González, Morán, Félix, Barbé, Silvia, Bertolini, Edson, de la Rosa, Felipe Siverio, and Marco-Noales, Ester
- Published
- 2023
- Full Text
- View/download PDF
3. Survey of huanglongbing associated with 'Candidatos Liberibacter' species in Spain: analyses of citrus plants and Trioza erytreae
- Author
-
SIVERIO, Felipe, MARCO-NOALES, Ester, BERTOLINI, Edson, TERESANI, Gabriela Ribeiro, PEÑALVER, Javier, MANSILLA, Pedro, AGUÍN, Olga, PÉREZ-OTERO, Rosa, ABELLEIRA, Adela, GUERRA-GARCÍA, José Asterio, HERNÁNDEZ, Estrella, CAMBRA, Mariano, and MILAGROS LÓPEZ, María
- Published
- 2017
4. Development of TaqMan Real-Time PCR Protocols for Simultaneous Detection and Quantification of the Bacterial Pathogen Ralstonia solanacearum and Their Specific Lytic Bacteriophages.
- Author
-
Bertolini, Edson, Figàs-Segura, Àngela, Álvarez, Belén, and Biosca, Elena G.
- Subjects
- *
RALSTONIA solanacearum , *BACTERIOPHAGES , *PLANT-water relationships , *PLANT extracts , *PLANT diseases , *PATHOGENIC microorganisms - Abstract
Ralstonia solanacearum is the causal agent of bacterial wilt, one of the most destructive diseases of solanaceous plants, affecting staple crops worldwide. The bacterium survives in water, soil, and other reservoirs, and is difficult to control. In this sense, the use of three specific lytic R. solanacearum bacteriophages was recently patented for bacterial wilt biocontrol in environmental water and in plants. To optimize their applications, the phages and the bacterium need to be accurately monitored and quantified, which is laborious and time-consuming with biological methods. In this work, primers and TaqMan probes were designed, and duplex and multiplex real-time quantitative PCR (qPCR) protocols were developed and optimized for the simultaneous quantification of R. solanacearum and their phages. The quantification range was established from 108 to 10 PFU/mL for the phages and from 108 to 102 CFU/mL for R. solanacearum. Additionally, the multiplex qPCR protocol was validated for the detection and quantification of the phages with a limit ranging from 102 targets/mL in water and plant extracts to 103 targets/g in soil, and the target bacterium with a limit ranging from 103 targets/mL in water and plant extracts to 104 targets/g in soil, using direct methods of sample preparation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
5. Quantitative detection of Citrus tristeza virus in plant tissues and single aphids by real-time RT-PCR
- Author
-
Bertolini, Edson, Moreno, Aranzazu, Capote, Nieves, Olmos, Antonio, de Luis, Ana, Vidal, Eduardo, Pérez-Panadés, Jordi, and Cambra, Mariano
- Published
- 2008
- Full Text
- View/download PDF
6. Detection of Pseudomonas savastanoi pv. savastanoi in olive plants by enrichment and PCR
- Author
-
Penyalver, Ramon, Garcia, Amparo, Ferrer, Amparo, Bertolini, Edson, and Lopez, Maria M.
- Subjects
Microbiological research -- Analysis ,Pseudomonas -- Research ,Polymerase chain reaction -- Analysis ,Genomes -- Analysis ,DNA -- Research ,Biological sciences - Abstract
Research has been conducted on the Pseudomonas savastanoi EW2009 gene iaaL sequence. The use of this gene sequence in designing PCR amplification primers is described.
- Published
- 2000
7. Real-time PCR for simultaneous and quantitative detection of quarantine phytoplasmas from apple proliferation (16SrX) group
- Author
-
Torres, Ester, Bertolini, Edson, Cambra, Mariano, Montón, Carmina, and Martín, María P.
- Published
- 2005
- Full Text
- View/download PDF
8. Real-time assay for quantitative detection of non-persistently transmitted Plum pox virus RNA targets in single aphids
- Author
-
Olmos, Antonio, Bertolini, Edson, Gil, Maite, and Cambra, Mariano
- Published
- 2005
- Full Text
- View/download PDF
9. Estimation of the number of aphids carrying Citrus tristeza virus that visit adult citrus trees
- Author
-
Marroquı́n, Carlos, Olmos, Antonio, Teresa Gorris, Marı́a, Bertolini, Edson, Carmen Martı́nez, M., Carbonell, Emilio A., Hermoso de Mendoza, Alfonso, and Cambra, Mariano
- Published
- 2004
- Full Text
- View/download PDF
10. A new and sensitive Co-operational polymerase chain reaction for rapid detection of Ralstonia solanacearum in water
- Author
-
Caruso, Paola, Bertolini, Edson, Cambra, Mariano, and López, Marı́a M.
- Published
- 2003
- Full Text
- View/download PDF
11. Simultaneous and co-operational amplification (Co-PCR): a new concept for detection of plant viruses
- Author
-
Olmos, Antonio, Bertolini, Edson, and Cambra, Mariano
- Published
- 2002
- Full Text
- View/download PDF
12. Single-step multiplex RT-PCR for simultaneous and colourimetric detection of six RNA viruses in olive trees
- Author
-
Bertolini, Edson, Olmos, Antonio, Martı́nez, M.Carmen, Gorris, Marı́a Teresa, and Cambra, Mariano
- Published
- 2001
- Full Text
- View/download PDF
13. Seasonal variation of Ralstonia solanocearum biovar 2 populations in a Spanish river: Recovery of stressed cells at low temperatures
- Author
-
Caruso, Paola, Palomo, Josa Luis, Bertolini, Edson, Alvarez, Belen, Lopez, Maria M., and Biosca, Elena G.
- Subjects
Seasonal variations (Diseases) -- Research ,Bacteria, Phytopathogenic -- Genetic aspects ,Bacteria, Phytopathogenic -- Physiological aspects ,Biological sciences - Abstract
The effects of temperature variation on the population and culturability of Ralstonia solanacearum biovar 2 cells on solid media and their survival at low temperatures were determined. Two liquid selective media for enrichment were used and compared them by using spiked river water samples in order to monitor the pathogen's abundance in water.
- Published
- 2005
14. Search for reservoirs of ' Candidatus Liberibacter solanacearum' and mollicutes in weeds associated with carrot and celery crops.
- Author
-
Alfaro-Fernández, Ana, Verdeguer, Mercedes, Rodríguez-León, Francisco, Ibáñez, Isabel, Hernández, Desamparados, Teresani, Gabriela, Bertolini, Edson, Cambra, Mariano, and Font, María
- Abstract
Currently, the main arthropod vectored pathogens associated with carrot and celery crop diseases are ˋ Candidatus Liberibacter solanacearum´, Spiroplasma citri and different phytoplasma species. Mitigation strategies require elucidating whether these pathogens survive in the weeds of these Apiaceae crops, which can act as reservoirs. Weed surveys were conducted in a vegetative cycle (April to October 2012) in the spontaneous vegetation that surrounded crops affected by ˋ Ca. L. solanacearum´, S. citri and/or phytoplasmas. Sixty-three species of 53 genera that belong to 23 botanical families were collected in the main carrot and celery Spanish production area. Species were identified, estimating coverage and abundance, and conserved in herbarium. Samples were analysed by nested-PCR with universal primers for phytoplasmas detection, and were sequenced for identification purposes; by conventional PCR for S. citri and real-time PCR for ˋ Ca. L. solanacearum´. The only detected pathogens were ˋ Ca. Phytoplasma trifolii´ (clover proliferation group 16Sr VI-A) in Amaranthus blitoides and Setaria adhaerens and ˋ Ca. P. solani´ (stolbur group 16Sr XII-A) in Convolvulus arvensis. These pathogens were also sporadically detected in celery or carrot crops. Unexpectedly, neither ˋ Ca. L. solanacearum´ nor S. citri was detected in the weed samples, despite the relatively high prevalence of these pathogens (less than 66 % and 25 %, respectively) in the surveyed plots. This suggests that weeds do not play an epidemiological role as reservoirs in the spread of such organisms in the studied region. The use of pathogen-free seed lots and the control of vectors are crucial for preventing the introduction and spread of these economical important pathogens to new areas. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
15. Modeling the Accuracy of Three Detection Methods of Grapevine leafroll-associated virus 3 During the Dormant Period Using a Bayesian Approach.
- Author
-
Olmos, Antonio, Bertolini, Edson, Ruiz-García, Ana B., Martínez, Carmen, Peiró, Rosa, and Vidal, Eduardo
- Subjects
- *
GRAPEVINE leafroll virus , *PLANT viruses , *DETECTION of phytopathogenic microorganisms , *BAYESIAN analysis , *ENZYME-linked immunosorbent assay , *POLYMERASE chain reaction - Abstract
Grapevine leafroll-associated virus 3 (GLRaV-3) has a worldwide distribution and is the most economically important virus that causes grapevine leafroll disease. Reliable, sensitive, and specific methods are required for the detection of the pathogen in order to assure the production of healthy plant material and control of the disease. Although different serological and nucleic acid-based methods have been developed for the detection of GLRaV-3, diagnostic parameters have not been established, and there is no gold standard method. Therefore, the main aim of this work was to determine the sensitivity, specificity, and likelihood ratios of three commonly used methods, including one serological test (double-antibody sandwich enzyme-linked immunosorbent assay [DAS-ELISA]) and two nucleic acid-based techniques (spot and conventional real-time reverse transcription-polymerase chain reaction [RT-PCR]). Latent class models using a Bayesian approach have been applied to determine diagnostic test parameters and to facilitate decision-making regarding diagnostic test selection. Statistical analysis has been based on the results of a total of 281 samples, which were collected during the dormant period from three different populations. The best-fit model out of the 49 implemented models revealed that DAS-ELISA was the most specific method (value = 0.99) and provided the highest degree of confidence in positive results. Conversely, conventional real-time RT-PCR was the most sensitive method (value = 0.98) and produced the highest degree of confidence in negative results. Furthermore, the estimation of likelihood ratios showed that in populations with low GLRaV-3 prevalence the most appropriate method could be DAS-ELISA, while conventional real-time RT-PCR could be the most appropriate method in medium or high prevalence populations. Combining both techniques significantly increases detection accuracy. The flexibility and power of Bayesian latent class models open new possibilities for the evaluation of diagnostic tests for plant viruses. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
16. Association of 'Candidatus Liberibacter solanacearum' with a Vegetative Disorder of Celery in Spain and Development of a Real-Time PCR Method for Its Detection.
- Author
-
Teresani, Gabriela R., Bertolini, Edson, Alfaro-Fernández, Ana, Martínez, Carmen, Ossamu Tanaka, Francisco André, Kitajima, Elliot W., Roselló, Montserrat, Sanjuán, Susana, Ferrándiz, Juan Carlos, López, María M., Cambra, Mariano, and Font, María Isabel
- Subjects
- *
CELERY , *POLYMERASE chain reaction , *RIBOSOMAL DNA , *ELECTRON microscopy , *PLANT cells & tissues - Abstract
A new symptomatology was observed in celery (Apium graveolens) in Villena, Spain in 2008. Symptomatology included an abnormal amount of shoots per plant and curled stems. These vegetative disorders were associated with 'Candidatus Liberibacter solanacearum' and not with phytoplasmas. Samples from plant sap were immobilized on membranes based on the spot procedure and tested using a newly developed real-time polymerase chain reaction assay to detect 'Ca. L. solanacearum'. Then, a test kit was developed and validated by intralaboratory assays with an accuracy of 100%. Bacterial-like cells with typical morphology of 'Ca. Liberibacter' were observed using electron microscopy in celery plant tissues. A fifth haplotype of 'Ca. L. solanacearum', named E, was identified in celery and in carrot after analyzing partial sequences of 16S and 50S ribosomal RNA genes. From our results, celery (family Apiaceae) can be listed as a new natural host of this emerging bacterium. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
17. Conventional and Real-Time PCRs for Detection of Erwinia piriflorinigrans Allow Its Distinction from the Fire Blight Pathogen, Erwinia amylovora.
- Author
-
Barbé, Silvia, Bertolini, Edson, Roselló, Montserrat, Llop, Pablo, and López, María M.
- Subjects
- *
ERWINIA , *POLYMERASE chain reaction , *FIRE-blight , *PEAR diseases & pests , *ERWINIA diseases - Abstract
Erwinia piriflorinigrans is a new pathogenic species of the bacterial genus Erwinia that has been described recently in Spain. Accurate detection and identification of E. piriflorinigrans are challenging because its symptoms on pear blossoms are similar to those caused by Erwinia amylovora, the causal agent of fire blight. Moreover, these two species share phenotypic and molecular characteristics. Two specific and sensitive conventional and real-time PCR protocols were developed to identify and detect E. piriflorinigrans and to differentiate it from E. amylovora and other species of this genus. These protocols were based on sequences from plasmid pEPIR37, which is present in all strains of E. piriflorinigrans analyzed. After the stability of the plasmid was demonstrated, the specificities of the protocols were confirmed by the amplification of all E. piriflorinigrans strains tested, whereas 304 closely related pathogenic and nonpathogenic Erwinia strains and microbiota from pear trees were not amplified. In sensitivity assays, 103 cells/ml extract were detected in spiked plant material by conventional or real-time PCR, and 102 cells/ml were detected in DNA extracted from spiked plant material by real-time PCR. The protocols developed here succeeded in detecting E. piriflorinigrans in 102 out of 564 symptomatic and asymptomatic naturally infected pear samples (flowers, cortex stem tissue, leaves, shoots, and fruitlets), in necrotic Pyracantha sp. blossoms, and in necrotic pear and apple tissues infected with both E. amylovora and E. piriflorinigrans. Therefore, these new tools can be used in epidemiological studies that will enhance our understanding of the life cycle of E. piriflorinigrans in different hosts and plant tissues and its interaction with E. amylovora. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
18. High prevalence of viruses in table grape from Spain detected by real-time RT-PCR.
- Author
-
Bertolini, Edson, García, Julio, Yuste, Alberto, and Olmos, Antonio
- Abstract
Table grapes from one of the most important growing area in Spain (Vinalopó, Alicante) protected by the Designation of Origin 'Vinalopó bagged table grape', were surveyed and analysed to determine the prevalence of the five viruses included in the Spanish certification program: Arabis mosaic virus (ArMV), Grapevine fanleaf virus (GFLV), Grapevine fleck virus (GFkV), Grapevine leafroll associated virus-1 (GLRaV-1) and Grapevine leafroll associated virus-3 (GLRaV-3). Ninety five sampling points were selected and the position of grapevine plants georeferenced. Samples were collected in two different vegetative periods and analyses were performed by ELISA and real-time RT-PCR. Purified RNA and immobilized viral targets from plant extracts on nylon membranes were used in parallel assays as templates for PCR assays. In order to analyse these five viral species by real-time RT-PCR, new specific primers and TaqMan probes were designed for detection of ArMV and GFkV. Real time RT-PCR from purified RNA was more sensitive than spot version and ELISA tests. The most prevalent virus was GFLV (95.8%) followed by GLRaV-3 (94.7%), GLRaV-1 (66.3%) and GFkV (65.3%). ArMV was not detected in any sample. The high level of viral infections and the presence of mixed infections suggest that initial infected plant material and uncontrolled traffic of propagation material have played an important role in the spread of viruses. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
19. Direct sample preparation methods for the detection of Plum pox virus by real-time RT-PCR.
- Author
-
Capote, Nieves, Bertolini, Edson, Olmos, Antonio, Vidal, Eduardo, Martínez, M. Carmen, and Cambra, Mariano
- Subjects
- *
PLANT materials centers , *PLANT diseases , *NUCLEIC acids , *PRUNUS , *PLANT cells & tissues , *DORMANCY in plants - Abstract
Direct systems to process plant materials allowed high-throughput testing of Plum pox virus (PPV) by real-time reverse transcription (RT)-PCR without nucleic acids purification. Crude plant extracts were diluted in buffer or spotted on membranes to be used as templates. Alternatively, immobilized PPV targets were amplified from fresh sections of plant tissues printed or squashed onto the same supports, without extract preparation. Spot real-time RT-PCR was validated as a PPV diagnostic method in samples collected during the dormancy period and showed high sensitivity (93.6%), specificity (98.0%), and post-test probability (97.9%) towards sharka disease. In an analysis of 2919 Prunus samples by spot real-time RT-PCR and DASI-ELISA 90.8% of the results coincided, demonstrating high agreement (k = 0.77 ± 0.01) between the two techniques. These results validate the use of immobilized PPV targets and spot real-time RT-PCR as screening method for large-scale analyses. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
20. An Evidence-Based Approach to Plum Pox Virus Detection by DASI-ELISA and RT-PCR in Dormant Period.
- Author
-
Olmos, Antonio, Bertolini, Edson, Capote, Nieves, and Cambra, Mariano
- Subjects
- *
EVIDENCE-based medicine , *CLINICAL medicine , *VETERINARY medicine , *METHODOLOGY , *ENZYME-linked immunosorbent assay , *WINTER , *BAYESIAN analysis , *POXVIRUSES ,PLUM diseases & pests - Abstract
An evidence-based approach, such as those developed in clinical and veterinary medicine, was applied to the detection of Plum pox virus (PPV) during the dormant period. A standardized methodology was used for the calculation of parameters of the operational capacity of DASI-ELISA and RT-PCR in wintertime. These methods are routinely handled to test the sanitary status of plants in national or international trading and in those cases concerning export-import of plant materials. Diagnosis often has to be performed during the dormant period, when plant material is commercialized. Some guidelines to interpret diagnostic results of wintertime are provided in an attempt to minimize risks associated with the methods and over-reliance on the binary outcome of a single assay. In order to evaluate if a complementary test increased the confidence of PPV diagnosis when discordant results between DASI-ELISA and RT-PCR are obtained, NASBA-FH also was included. Likelihood ratios of each method were estimated based on the sensitivity and specificity obtained in wintertime. Subsequently, a Bayesian approach was performed to calculate post-test probability of PPV infection in spring. Results of evidence-based approach show that different PPV prevalences require different screening tests. Thus, at very low PPV prevalence levels DASI-ELISA should be used as the election method, whilst at the highest PPV prevalence levels RT-PCR should be performed. NASBA-FH could be used at medium prevalences to clarify discordances between DASIELISA and RT-PCR. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
21. Isothermal amplification coupled with rapid flow-through hybridisation for sensitive diagnosis of Plum pox virus
- Author
-
Olmos, Antonio, Bertolini, Edson, and Cambra, Mariano
- Subjects
- *
POXVIRUS diseases , *VIRUS diseases , *RNA , *PATHOGENIC microorganisms - Abstract
Abstract: A nucleic acid sequence-based amplification method coupled with rapid flow-through hybridisation (NASBA-FH) was developed for diagnosis of Plum pox virus (PPV). The sensitivity level achieved by NASBA-FH was 10 times higher than that obtained by Co-PCR and 1000 times higher than the sensitivity afforded by RT-PCR. In addition, samples from 262 stone-fruit trees collected during winter and spring seasons were analysed. These samples were tested using methods recommended by the European and Mediterranean Plant Protection Organization to detect PPV (DASI-ELISA, RT-PCR and Co-PCR) and by NASBA-FH. Winter PPV diagnostic results by ELISA and NASBA-FH coincided in 90.8%, while ELISA and PCR-based methods coincided in 91.6% and PCR-based methods with NASBA-FH agreed in 95.4%. In spring, diagnostic results were similar with all the molecular techniques, which agreed with ELISA results for 98.8% of the trees. NASBA-FH was able to detect more positive infections in winter, which were later confirmed in spring. These results indicate that NASBA-FH is a suitable molecular method for routine PPV detection in the winter and spring. This user-friendly isothermal RNA amplification coupled with a very fast flow-through hybridisation (15min) opens up new possibilities for rapid and reliable diagnosis of a variety of pathogens. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
22. Highly sensitive detection of Pseudomonas savastanoi pv. savastanoi in asymptomatic olive plants by nested-PCR in a single closed tube
- Author
-
Bertolini, Edson, Penyalver, Ramón, Garcıa, Amparo, Olmos, Antonio, Quesada, José M., Cambra, Mariano, and López, Marıa M.
- Subjects
- *
POLYMERASE chain reaction , *PSEUDOMONAS - Abstract
A nested-polymerase chain reaction (PCR) has been set up to be performed in a single closed tube for the detection of Pseudomonas savastanoi pv. savastanoi. Nested-PCR coupled with dot-blot hybridization was able to detect up to one cell of the target per ml of olive extract, showing the greatest sensitivity compared with all previously reported detection assays. Validation of the developed procedure for diagnosis and epidemiological purposes was achieved by testing ca. 240 asymptomatic plant samples from olive trees. When performing the other previously reported techniques (bacterial isolation and single PCR), P. savastanoi was detected in 50 of the analyzed samples, while with the new developed nested-PCR assay, the bacterium was detected in 82 samples. [Copyright &y& Elsevier]
- Published
- 2003
- Full Text
- View/download PDF
23. Genomic Analysis of the First European Bacteriophages with Depolymerase Activity and Biocontrol Efficacy against the Phytopathogen Ralstonia solanacearum.
- Author
-
Biosca, Elena G., Català-Senent, José Francisco, Figàs-Segura, Àngela, Bertolini, Edson, López, María M., and Álvarez, Belén
- Subjects
RALSTONIA solanacearum ,GENOMICS ,BACTERIOPHAGES ,PLANT-water relationships ,PLANT diseases ,LYSINS - Abstract
Ralstonia solanacearum is the causative agent of bacterial wilt, one of the most destructive plant diseases. While chemical control has an environmental impact, biological control strategies can allow sustainable agrosystems. Three lytic bacteriophages (phages) of R. solanacearum with biocontrol capacity in environmental water and plants were isolated from river water in Europe but not fully analysed, their genomic characterization being fundamental to understand their biology. In this work, the phage genomes were sequenced and subjected to bioinformatic analysis. The morphology was also observed by electron microscopy. Phylogenetic analyses were performed with a selection of phages able to infect R. solanacearum and the closely related phytopathogenic species R. pseudosolanacearum. The results indicated that the genomes of vRsoP-WF2, vRsoP-WM2 and vRsoP-WR2 range from 40,688 to 41,158 bp with almost 59% GC-contents, 52 ORFs in vRsoP-WF2 and vRsoP-WM2, and 53 in vRsoP-WR2 but, with only 22 or 23 predicted proteins with functional homologs in databases. Among them, two lysins and one exopolysaccharide (EPS) depolymerase, this type of depolymerase being identified in R. solanacearum phages for the first time. These three European phages belong to the same novel species within the Gyeongsanvirus, Autographiviridae family (formerly Podoviridae). These genomic data will contribute to a better understanding of the abilities of these phages to damage host cells and, consequently, to an improvement in the biological control of R. solanacearum. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
24. The Challenge of Environmental Samples for PCR Detection of Phytopathogenic Bacteria: A Case Study of Citrus Huanglongbing Disease.
- Author
-
Morán, Félix, Barbé, Silvia, Bastin, Saskia, Navarro, Inmaculada, Bertolini, Edson, López, María M., Hernández-Suárez, Estrella, Urbaneja, Alberto, Tena, Alejandro, Siverio, Felipe, and Marco-Noales, Ester
- Subjects
CITRUS greening disease ,PHYTOPATHOGENIC bacteria ,ENVIRONMENTAL sampling ,PARASITIC wasps ,CITRUS ,PATHOGENIC bacteria ,CASE studies - Abstract
Huanglongbing (HLB) is the most devastating citrus disease and is associated with three bacterial species of the genus 'Candidatus Liberibacter' transmitted by insect vectors. The early detection of HLB is based on PCR methods, and it is one of the cornerstones for preventing incursion into disease-free countries. However, the detection of phytopathogenic bacteria with PCR-based methods is problematic in surveys that include a variety of samples of different origins. Here, we first report the proportion of amplifications obtained by two standardized real-time PCR methods for the diagnosis of HLB in various environmental samples that include plants, psyllid vectors, and parasitic wasps of the psyllids. The results of 4915 samples showed that 9.3% of them were amplified by the first rapid screening test and only 0.3% by the more specific tests. Most of the amplifications were associated with parasitic wasps. We designed the primers external to the target regions of both real-time PCR protocols to determine if amplifications belonged to one of three 'Ca. Liberibacter' species associated with HLB. The bioinformatic analysis of the sequences obtained with these primers revealed that all these amplifications came from the presence of other prokaryotic organisms in the samples. The primers developed in this study overcome the problem of undesired amplification in environmental samples. Thus, they could be used in future survey protocols to prevent the eradication of negative trees and the generation of unjustified alarms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
25. Molecular Characterization of the Complete Coding Sequence of Olive Leaf Yellowing-Associated Virus.
- Author
-
Ruiz-García, Ana Belén, Candresse, Thierry, Canales, Celia, Morán, Félix, Machado de Oliveira, Carlos, Bertolini, Edson, and Olmos, Antonio
- Subjects
OLIVE leaves ,NUCLEOTIDE sequence ,PROTEIN analysis ,GENE targeting ,VIRUSES - Abstract
Genome organization and phylogenetic relationships of olive leaf yellowing-associated virus (OLYaV) with other members of the Closteroviridae family were determined. The complete coding sequence of OLYaV was obtained by high throughput sequencing of total RNA from a 35-year-old olive tree (cv. Zarzaleña) from Brazil, showing olive leaf yellowing disease and deformations in the wood. This represents the first report of OLYaV in this country. A genomic sequence of 16,700 nt containing 11 open reading frames (ORFs) was recovered, representing the complete virus coding capacity. The knowledge of the nucleotide sequence of the genome including the gene that codes the coat protein will facilitate the development of diagnostic tests, which are limited so far to PCR-based methods targeting the HSP70h gene. Interestingly, a thaumatin-like protein (ORF2), previously reported in other unassigned viruses in the Closteroviridae family, persimmon virus B and actidinia virus 1, was identified in the OLYaV genome. Phylogenetic analysis of shared proteins (ORF1a, ORF1b, HSP70h, HSP90h and CP) with all members of the Closteroviridae family provides new insight into the taxonomic position of these three closteroviruses and suggests they could represent a new genus in the family. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
26. 'Candidatus Liberibacter Solanacearum' Is Unlikely to Be Transmitted Spontaneously from Infected Carrot Plants to Citrus Plants by Trioza Erytreae.
- Author
-
Quintana-González de Chaves, María, Teresani, Gabriela R., Hernández-Suárez, Estrella, Bertolini, Edson, Moreno, Aránzazu, Fereres, Alberto, Cambra, Mariano, and Siverio, Felipe
- Subjects
CITRUS greening disease ,CARROTS ,PLANTING ,CANDIDATUS ,CITRUS fruit industry ,PLANT life cycles ,CITRUS - Abstract
Simple Summary: The potential transmission of the bacterium 'Candidatus Liberibacter solanacearum' from infected carrot plants to citrus plants by the African citrus psyllid (Trioza erytreae) should be considered and therefore studied, because this psyllid is an efficient vector of citrus huanglongbing disease (associated to bacteria from the same genus). The aim of this study was to assess the bacterium transmission by three different ways: dodder, grafting and the African citrus psyllid. Additionally, the feeding behavior and oviposition of this psyllid were also evaluated. The bacterium was only transmitted from carrot plants to citrus plants through dodder, although the infection was not established. The African psyllid could settle and oviposit in carrot plants, but it was not able to complete its life cycle on them. This psyllid acquired and transmitted the bacterium from carrots to carrots but was not able to transmit it to citrus plants. In conclusion, after having assessed all relevant possibilities by experimental transmissions from infected carrot plants to citrus plants, the bacterium was transmitted but not established. Our data suggest that the bacterium transmission to citrus plants by the African citrus psyllid is unlikely. Bacteria belonging to 'Candidatus Liberibacter spp.' are associated with various severe diseases in the five continents. The African citrus psyllid Trioza erytreae (Hemiptera: Triozidae) is an efficient vector of citrus huanglongbing-HLB disease, absent in the Mediterranean basin. This psyllid is currently present in the islands and mainland Portugal and Spain, where the prevalence of 'Ca. Liberibacter solanacearum' (CaLsol) associated to a carrot disease is high. Trioza erytreae normally feeds on citrus plants but has also been observed on other crops. It would be a great concern to the Mediterranean citrus industry if T. erytreae could transmit this bacterium from carrots to citrus and cause disease; therefore, the transmission of CaLsol from carrot plants to citrus plants was experimentally assessed. Although CaLsol was initially detected on receptor citrus plants in transmission assays by dodder and budding, the infection was not established. The feeding behavior by electrical penetration graphs and oviposition of T. erytreae on carrot plants versus citrus plants was evaluated. Trioza erytreae only reached the phloem in citrus plants. However, it was able to acquire CaLsol from infected carrots but unable to transmit it to citrus plants. CaLsol was detected in some carrot plants immediately after 7 and 14 days (inoculation access period), but it was not detected after one month. Trioza erytreae was unable to complete its life cycle on carrot plants. In conclusion, the efficient vector of bacteria associated to huanglongbing was unable to transmit CaLsol from carrot to citrus plants, but it acquired and transmitted the bacterium from carrot to carrot plants with low efficiency. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
27. Interference between variants of peach latent mosaic viroid reveals novel features of its fitness landscape: implications for detection.
- Author
-
Serra, Pedro, Bertolini, Edson, Martínez, M. Carmen, Cambra, Mariano, and Flores, Ricardo
- Abstract
Natural populations of peach latent mosaic viroid (PLMVd) are complex mixtures of variants. During routine testing, TaqMan rtRT-PCR and RNA gel-blot hybridization produced discordant results with some PLMVd isolates. Analysis of the corresponding populations showed that they were exclusively composed of variants (of class II) with a structural domain different from that of the reference and many other variants (of class I) targeted by the TaqMan rtRT-PCR probe. Bioassays in peach revealed that a representative PLMVd variant of class II replicated without symptoms, generated a progeny with low nucleotide diversity, and, intriguingly, outcompeted a representative symptomatic variant of class I when co-inoculated in equimolecular amounts. A number of informative positions associated with the higher fitness of variants of class II have been identified, and novel sets of primers and probes for universal or specific TaqMan rtRT-PCR detection of PLMVd variants have been designed and tested. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
28. Genetic diversity reflects geographical origin of Ralstonia solanacearum strains isolated from plant and water sources in Spain.
- Author
-
Caruso, Paola, Biosca, Elena G., Bertolini, Edson, Marco-Noales, Ester, Gorris, María Teresa, Licciardello, Concetta, and López, María M.
- Subjects
- *
RALSTONIA solanacearum , *BACTERIAL wilt of potato , *PHENOTYPES , *GENOTYPES , *PULSED-field gel electrophoresis - Abstract
The characterization and intraspecific diversity of a collection of 45 Ralstonia solanacearum strains isolated in Spain from different sources and geographical origins is reported. To test the influence of the site and the host on strain diversity, phenotypic and genotypic analysis were performed by a polyphasic approach. Biochemical and metabolic profiles were compared. Serological relationship was evaluated by Indirect-ELISA using polyclonal and monoclonal antibodies. For genotypic analysis, hrpB and egl DNA sequence analysis, repetitive sequences (rep-PCR), amplified fragment length polymorphism (AFLP) profiles and macrorestriction with XbaI followed by pulsed field gel electrophoresis (PFGE) were performed. The biochemical and metabolic characterization, serological tests, rep-PCR typing and phylogenetic analysis showed that all analysed strains belonged to phylotype II sequevar 1 and shared homogeneous profiles. However, interesting differences among strains were found by AFLP and macrorestriction with XbaI followed by PFGE techniques, some profiles being related to the geographical origin of the strains. Diversity results obtained offer new insights into the biogeography of this quarantine organism and its possible sources and reservoirs in Spain and Mediterranean countries. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
29. Real-time multiplex RT-PCR for the simultaneous detection of the five main grapevine viruses
- Author
-
López-Fabuel, Irene, Wetzel, Thierry, Bertolini, Edson, Bassler, Alexandra, Vidal, Eduardo, Torres, Luis B., Yuste, Alberto, and Olmos, Antonio
- Subjects
- *
DIAGNOSTIC use of polymerase chain reaction , *GRAPEVINE leafroll virus , *VIRUS identification , *RNA viruses , *VIRUS diseases of plants , *ENZYME-linked immunosorbent assay , *PLANT extracts - Abstract
Abstract: A real-time multiplex RT-PCR has been developed for the simultaneous detection and identification of the major RNA viruses that infect grapevines (Grapevine fanleaf virus, Arabis mosaic virus, Grapevine leafroll-associated virus 1, Grapevine leafroll-associated virus 3 and Grapevine fleck virus). Serial dilutions of infected plant extracts were tested using the new method, and the results were compared with those obtained using a commercially available ELISA and real-time singleplex RT-PCR. The two real-time RT-PCR versions detected up to the same level of dilution and were at least 10,000 times more sensitive than the ELISA. In addition, 158 grapevine plants collected in a survey of the Protected Designation of Origin in Alicante, Spain were compared using the three methods. The results of the molecular methods were very similar, with only four discordant results, and both were able to detect many more infected plants than the ELISA. The high prevalence of Grapevine fleck virus, Grapevine leafroll-associated virus 3 and Grapevine fanleaf virus suggests that the main pathways of viral introduction are infected plant material that has escaped controls and/or uncontrolled traffic of propagating plant material. Real-time multiplex RT-PCR could be used to facilitate a better control of grapevine viruses. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
30. Recovery of Pseudomonas savastanoi pv. savastanoi from symptomless shoots of naturally infected olive trees.
- Author
-
Quesada, José M., García, Amparo, Bertolini, Edson, López, María M., and Penyalver, Ramón
- Subjects
- *
PSEUDOMONAS , *OLIVE , *PLANT epidemiology , *LEAVES , *PLANT shoots , *AGRICULTURAL pests - Abstract
Seasonal dynamics of Pseudomonas savastanoi pv. savastanoi (Psv) on stems and leaves from symptomless shoots of naturally infected olive trees was monitored in Spanish olive orchards. Data inferred from the comparison between washing of leaves and dilution-plating versus leaf printing of individual leaves suggested that Psv population sizes varied by over several orders of magnitude, among leaves sampled concurrently from the same shoot. We did not find significant differences between leaves and stems, in respect to the number of samples where Psv was isolated or detected by PCR, showing that Psv colonizes both leaves and stems. The frequencies of Psv isolation and average populations were highly variable among field plots. No correlation between Psv populations and those of non-Psv bacteria in any plant material or field plot was observed. However, where both Psv and yellow Pantoea agglomerans colonies were isolated a positive correlation was found. In a selected field plot, dynamics of Psv over three years showed significant differences between summer and the rest of seasons. The highest Psv population occurred in warm, rainy months, while low numbers were generally found in hot and dry months. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
31. Virus-Viroid Interactions: Citrus Tristeza Virus Enhances the Accumulation of Citrus Dwarfing Viroid in Mexican Lime via Virus-Encoded Silencing Suppressors.
- Author
-
Serra, Pedro, Bani Hashemian, Seyed M., Fagoaga, Carmen, Romero, Juan, Ruiz-Ruiz, Susana, Gorris, Maria T., Bertolini, Edson, and Duran-Vila, Núria
- Subjects
- *
VIROIDS , *CITRUS tristeza virus , *MEXICAN lime , *GENE expression in plants , *PLANT gene silencing , *GENETIC code , *TRANSGENIC plants - Abstract
An assay to identify interactions between Citrus dwarfing viroid (CDVd) and Citrus tristeza virus (CTV) showed that viroid titer was enhanced by the coinfecting CTV in Mexican lime but not in etrog citron. Since CTV encodes three RNA silencing suppressors (RSSs), p23, p20 and p25, an assay using transgenic Mexican limes expressing each RSS revealed that p23 and, to a lesser extent, p25 recapitulated the effect observed with coinfections of CTV and CDVd. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
32. Estimation of the number of aphids carrying Citrus tristeza virus that visit adult citrus trees
- Author
-
Marroquín, Carlos, Olmos, Antonio, Teresa Gorris, María, Bertolini, Edson, Carmen Martínez, M., Carbonell, Emilio A., Hermoso de Mendoza, Alfonso, and Cambra, Mariano
- Subjects
- *
POLYMERASE chain reaction , *APHIDIIDAE , *CITRUS fruits - Abstract
Aphid species were counted on citrus trees in orchards in Valencia, Spain, in the spring and autumn of 1997, 1998 and 1999. Moericke yellow water traps, the ‘sticky shoot’ method and counts of established colonies were used in extensive surveys in which 29,502 aphids were recorded and identified. Aphis spiraecola and Aphis gossypii were the most abundant aphid species. The numbers of aphid species landing on mature trees of grapefruit, sweet orange, lemon and clementine and satsuma mandarins, were estimated by counting the numbers of young shoots/tree and aphids trapped on sticky shoots. The proportions of the different aphid species captured were: A. gossypii (53%), A. spiraecola (32%), Toxoptera aurantii (11%), Myzus persicae (1%), Aphis craccivora (1%) and other species (2%). Clementine was the most visited species with 266,700 aphids landing/tree in spring 2000, followed by lemon (147,000), sweet orange (129,150), grapefruit (103,200), and satsuma (92,400). The numbers and relative percentages of aphids carrying Citrus tristeza virus (CTV) were assessed by nested RT-PCR in single closed tubes and analysed by extraction of RNA-CTV targets from trapped aphids. An average of 37,190 CTV-carrying aphids visited each tree in spring 2000 (29 per shoot). The percentage detection of viral RNA in the aphid species that landed were 27% for A. gossypii, 23% for A. spiraecola and 19% for T. aurantii. This high incidence of aphids carrying CTV is consistent with the high prevalence and rapid spread of CTV in sweet orange, clementine, and satsuma mandarins in recent years in the region. The infection rate was proportional to the number of aphids landing/tree. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.