14 results on '"Chudakova, Daria"'
Search Results
2. Non-Tumor Cells within the Tumor Microenvironment—The "Eminence Grise" of the Glioblastoma Pathogenesis and Potential Targets for Therapy.
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Bugakova, Aleksandra S., Chudakova, Daria A., Myzina, Maria S., Yanysheva, Elvira P., Ozerskaya, Iuliia V., Soboleva, Alesya V., Baklaushev, Vladimir P., and Yusubalieva, Gaukhar M.
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TUMOR microenvironment , *GLIOBLASTOMA multiforme , *PROGNOSIS , *CENTRAL nervous system , *CELL populations - Abstract
Glioblastoma (GBM) is the most common malignancy of the central nervous system in adults. GBM has high levels of therapy failure and its prognosis is usually dismal. The phenotypic heterogeneity of the tumor cells, dynamic complexity of non-tumor cell populations within the GBM tumor microenvironment (TME), and their bi-directional cross-talk contribute to the challenges of current therapeutic approaches. Herein, we discuss the etiology of GBM, and describe several major types of non-tumor cells within its TME, their impact on GBM pathogenesis, and molecular mechanisms of such an impact. We also discuss their value as potential therapeutic targets or prognostic biomarkers, with reference to the most recent works on this subject. We conclude that unless all "key player" populations of non-tumor cells within the TME are considered, no breakthrough in developing treatment for GBM can be achieved. [ABSTRACT FROM AUTHOR]
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- 2024
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3. A novel small molecule that kills a subset of MLL-rearranged leukemia cells by inducing mitochondrial dysfunction
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Somers, Klaartje, Wen, Victoria W., Middlemiss, Shiloh M. C., Osborne, Brenna, Forgham, Helen, Jung, MoonSun, Karsa, Mawar, Clifton, Molly, Bongers, Angelika, Gao, Jixuan, Mayoh, Chelsea, Raoufi-Rad, Newsha, Kusnadi, Eric P., Hannan, Kate M., Scott, David A., Kwek, Alan, Liu, Bing, Flemming, Claudia, Chudakova, Daria A., Pandher, Ruby, Failes, Tim W., Lim, James, Angeli, Andrea, Osterman, Andrei L., Imamura, Toshihiko, Kees, Ursula R., Supuran, Claudiu T., Pearson, Richard B., Hannan, Ross D., Davis, Thomas P., McCarroll, Joshua, Kavallaris, Maria, Turner, Nigel, Gudkov, Andrei V., Haber, Michelle, Norris, Murray D., and Henderson, Michelle J.
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- 2019
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4. Improving Efficiency of Direct Pro-Neural Reprogramming: Much-Needed Aid for Neuroregeneration in Spinal Cord Injury.
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Chudakova, Daria A., Samoilova, Ekaterina M., Chekhonin, Vladimir P., and Baklaushev, Vladimir P.
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SPINAL cord injuries , *CYTOLOGY , *CENTRAL nervous system injuries , *ELECTRIC stimulation , *SOMATIC cells , *PROGENITOR cells - Abstract
Spinal cord injury (SCI) is a medical condition affecting ~2.5–4 million people worldwide. The conventional therapy for SCI fails to restore the lost spinal cord functions; thus, novel therapies are needed. Recent breakthroughs in stem cell biology and cell reprogramming revolutionized the field. Of them, the use of neural progenitor cells (NPCs) directly reprogrammed from non-neuronal somatic cells without transitioning through a pluripotent state is a particularly attractive strategy. This allows to "scale up" NPCs in vitro and, via their transplantation to the lesion area, partially compensate for the limited regenerative plasticity of the adult spinal cord in humans. As recently demonstrated in non-human primates, implanted NPCs contribute to the functional improvement of the spinal cord after injury, and works in other animal models of SCI also confirm their therapeutic value. However, direct reprogramming still remains a challenge in many aspects; one of them is low efficiency, which prevents it from finding its place in clinics yet. In this review, we describe new insights that recent works brought to the field, such as novel targets (mitochondria, nucleoli, G-quadruplexes, and others), tools, and approaches (mechanotransduction and electrical stimulation) for direct pro-neural reprogramming, including potential ones yet to be tested. [ABSTRACT FROM AUTHOR]
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- 2023
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5. COVID-19—The Shift of Homeostasis into Oncopathology or Chronic Fibrosis in Terms of Female Reproductive System Involvement.
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Petersen, Elena, Chudakova, Daria, Erdyneeva, Daiana, Zorigt, Dulamsuren, Shabalina, Evgeniya, Gudkov, Denis, Karalkin, Pavel, Reshetov, Igor, and Mynbaev, Ospan A.
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GENITALIA , *COVID-19 , *COVID-19 pandemic , *FIBROSIS , *HOMEOSTASIS , *PUBLIC health - Abstract
The COVID-19 pandemic caused by the SARS-CoV-2 coronavirus remains a global public health concern due to the systemic nature of the infection and its long-term consequences, many of which remain to be elucidated. SARS-CoV-2 targets endothelial cells and blood vessels, altering the tissue microenvironment, its secretion, immune-cell subpopulations, the extracellular matrix, and the molecular composition and mechanical properties. The female reproductive system has high regenerative potential, but can accumulate damage, including due to SARS-CoV-2. COVID-19 is profibrotic and can change the tissue microenvironment toward an oncogenic niche. This makes COVID-19 and its consequences one of the potential regulators of a homeostasis shift toward oncopathology and fibrosis in the tissues of the female reproductive system. We are looking at SARS-CoV-2-induced changes at all levels in the female reproductive system. [ABSTRACT FROM AUTHOR]
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- 2023
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6. Characterisation of lymphocyte subpopulations in infantile haemangioma
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Tan, Elysia M S, Itinteang, Tinte, Chudakova, Daria A, Dunne, Jonathan C, Marsh, Reginald, Brasch, Helen D, Davis, Paul F, and Tan, Swee T
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- 2015
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7. Characterisation of subpopulations of myeloid cells in infantile haemangioma
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Tan, Elysia M S, Chudakova, Daria A, Davis, Paul F, Brasch, Helen D, Itinteang, Tinte, and Tan, Swee T
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- 2015
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8. The Extracellular Matrix-Derived Biomarkers for Diagnosis, Prognosis, and Personalized Therapy of Malignant Tumors.
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Petersen, Elena V., Chudakova, Daria A., Skorova, Ekaterina Yu., Anikin, Vladimir, Reshetov, Igor V., and Mynbaev, Ospan A.
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EXTRACELLULAR vesicles ,TUMOR markers ,BIOMARKERS ,EXTRACELLULAR matrix ,TUMOR microenvironment - Abstract
The tumor biomarkers already have proven clinical value and have become an integral part in cancer management and modern translational oncology. The tumor tissue microenvironment (TME), which includes extracellular matrix (ECM), signaling molecules, immune and stromal cells, and adjacent non-tumorous tissue, contributes to cancer pathogenesis. Thus, TME-derived biomarkers have many clinical applications. This review is predominately based on the most recent publications (manuscripts published in a last 5 years, or seminal publications published earlier) and fills a gap in the current literature on the cancer biomarkers derived from the TME, with particular attention given to the ECM and products of its processing and degradation, ECM-associated extracellular vesicles (EVs), biomechanical characteristics of ECM, and ECM-derived biomarkers predicting response to the immunotherapy. We discuss the clinical utility of the TME-incorporating three-dimensional in vitro and ex vivo cell culture models for personalized therapy. We conclude that ECM is a critical driver of malignancies and ECM-derived biomarkers should be included in diagnostics and prognostics panels of markers in the clinic. [ABSTRACT FROM AUTHOR]
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- 2020
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9. Lynch Syndrome Germline Mutations in Breast Cancer: Next Generation Sequencing Case-Control Study of 1,263 Participants.
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Nikitin, Aleksey G., Chudakova, Daria A., Enikeev, Rafael F., Sakaeva, Dina, Druzhkov, Maxim, Shigapova, Leyla H., Brovkina, Olga I., Shagimardanova, Elena I., Gusev, Oleg A., and Gordiev, Marat G.
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DNA repair ,HEREDITARY nonpolyposis colorectal cancer ,DNA mismatch repair ,BREAST cancer ,GERM cells ,GENETIC counseling ,CASE-control method - Abstract
Genome instability—the increased tendency of acquiring mutations in the genome and ability of a cell to tolerate high mutation burden—is one of the drivers of cancer. Genome instability results from many causes including defects in DNA repair systems. Previously, it has been shown that germline pathogenic mutations in DNA Mismatch Repair (MMR) pathway cause cancer-predisposing Lynch Syndrome. We proposed that Lynch Syndrome-related germline mutations (LS-mutations) are associated with breast cancer (BC). In this study, we performed Targeted Next-Generation Sequencing of MMR pathway genes MLH1, MSH2, MSH6, EPCAM , and PMS2 in a cohort of 711 patients with hereditary BC, 60 patients with sporadic BC, and 492 healthy donors. Sixty-nine patients (9.7%) with hereditary BC harbored at least one germline mutation in the MMR pathway genes, of them 32 patients (4.5%) harbored mutations in MMR pathway genes which we define as pathogenic or likely pathogenic, and of them 26 patients (3.6%) did not have any pathogenic mutations in DDR pathway genes, compared to two mutations in MMR pathway genes (0.4%) detected in a group of 492 healthy donors [ p = 0.00013, OR = 8.9 (CI 95% 2.2–78.4)]. Our study demonstrates that LS-mutations are present in patients with hereditary BC more frequently than in healthy donors, and that there is an association of hereditary BC and mutations c.1321G>A in MLH1 , c.260C>G and c.2178G>C in MSH2 , c.3217C>T in MSH6 , c.1268C>G and c.86G>C in PMS2 genes. This finding provides a rationale for including pathogenic LS-mutations into genetic counseling tests for patients with hereditary BC. [ABSTRACT FROM AUTHOR]
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- 2020
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10. The Ethnic-Specific Spectrum of Germline Nucleotide Variants in DNA Damage Response and Repair Genes in Hereditary Breast and Ovarian Cancer Patients of Tatar Descent.
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Brovkina, Olga I., Shigapova, Leila, Chudakova, Daria A., Gordiev, Marat G., Enikeev, Rafael F., Druzhkov, Maxim O., Khodyrev, Dmitriy S., Shagimardanova, Elena I., Nikitin, Alexey G., and Gusev, Oleg A.
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- 2018
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11. Expression of embryonic stem cell markers in keloid-associated lymphoid tissue.
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Grant, Chelsea, Chudakova, Daria A., Itinteang, Tinte, Chibnall, Alice M., Brasch, Helen D., Davis, Paul F., and Tan, Swee T.
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KELOIDS ,EMBRYONIC stem cell research ,BIOMARKERS ,LYMPHOID tissue ,ENDOTHELIUM ,THERAPEUTICS - Abstract
Aims: To identify, characterise and localise the population of primitive cells in keloid scars (KS). Methods: 5-μm-thick formalin-fixed paraffin-embedded sections of KS samples from 10 patients underwent immunohistochemical (IHC) staining for the embryonic stem cell (ESC) markers OCT4, SOX2, pSTAT3 and NANOG, and keloid-associated lymphoid tissue (KALT) markers CD4 and CD20. NanoString gene expression analysis and in situ hybridisation (ISH) were used to determine the abundance and localisation of the mRNA for these ESC markers. Results: IHC staining revealed the expression of the ESC markers OCT4, SOX2, pSTAT3 and NANOG by a population of cells within KS tissue. These are localised to the endothelium of the microvessels within the KALTs. NanoString gene expression analysis confirmed the abundance of the transcriptional expression of the same ESC markers. ISH localised the expression of the ESC transcripts to the primitive endothelium in KS tissue. Conclusions: This report demonstrates the expression of ESC markers OCT4, SOX2, pSTAT3 and NANOG by the endothelium of the microvessels within the KALTs. These findings show a unique niche of primitive cells within KS, expressing ESC markers, revealing a potential therapeutic target in the treatment of KS. [ABSTRACT FROM AUTHOR]
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- 2016
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12. Developmentally Regulated Ceramide Synthase 6 Increases Mitochondrial Ca2+ Loading Capacity and Promotes Apoptosis.
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Novgorodov, Sergei A., Chudakova, Daria A., Wheeler, Brian W., Bielawski, Jacek, Kindy, Mark S., Obeid, Lina M., and Gudz, Tatyana I.
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BIOCHEMICAL research , *CERAMIDES , *APOPTOSIS , *SPHINGOLIPIDS , *NIEMANN-Pick diseases , *PERMEABILITY - Abstract
Ceramides, which are membrane sphingolipids and key mediators of cell-stress responses, are generated by a family of (dihydro) ceramide synthases (Lass1-6/CerS1-6). Here, we report that brain development features significant increases in sphingomyelin, sphingosine, and most ceramide species. In contrast, C16:0-ceramide was gradually reduced and CerS6 was down-regulated in mitochondria, thereby implicating CerS6 as a primary ceramide synthase generating C16:0-ceramide. Investigations into the role of CerS6 in mitochondria revealed that ceramide synthase down-regulation is associated with dramatically decreased mitochondrial Ca2+-loading capacity, which could be rescued by addition of ceramide. Selective CerS6 complexing with the inner membrane component of the mitochondrial permeability transition pore was detected by immunoprecipitation. This suggests that CerS6-generated ceramide could prevent mitochondrial permeability transition pore opening, leading to increased Ca2+ accumulation in the mitochondrial matrix. We examined the effect of high CerS6 expression on cell survival in primary oligodendrocyte (OL) precursor cells, which undergo apoptotic cell death during early postnatal brain development. Exposure of OLs to glutamate resulted in apoptosis that was prevented by inhibitors of de novo ceramide biosynthesis, myriocin and fumonisin B1. Knockdown of CerS6 with siRNA reduced glutamate-triggered OL apoptosis, whereas knockdown of CerS5 had no effect: the pro-apoptotic role of CerS6 was not stimulus-specific. Knockdown of CerS6 with siRNA improved cell survival in response to nerve growth factor-induced OL apoptosis. Also, blocking mitochondrial Ca2+ uptake or decreasing Ca2+-dependent protease calpain activity with specific inhibitors prevented OL apoptosis. Finally, knocking down CerS6 decreased calpain activation. Thus, our data suggest a novel role for CerS6 in the regulation of both mitochondrial Ca2+ homeostasis and calpain, which appears to be important in OL apoptosis during brain development. [ABSTRACT FROM AUTHOR]
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- 2011
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13. Integrin-associated Lyn Kinase Promotes Cell Survival by Suppressing Acid Sphingomyelinase Activity.
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Chudakova, Daria A., Zeidan, Youssef H., Wheeler, Brian W., Jin Yu, Novgorodov, Sergei A., Kindy, Mark S., Hannun, Yusuf A., and Gudz, Tatyana I.
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INTEGRINS , *CELL adhesion molecules , *APOPTOSIS , *FIBRONECTINS , *HYDROLYSIS , *MOLECULAR biology - Abstract
Integrins govern cellular adhesion and transmit signals leading to activation of intracellular signaling pathways aimed to prevent apoptosis. Herein we report that attachment of oligodendrocytes (OLs) to fibronectin via αvβ3 integrin receptors rendered the cells more resistant to apoptosis than the cells attached to laminin via α6β1 integrins. Investigation of molecular mechanisms involved in αvβ3integrin-mediated cell survival revealed that ligation of the integrin with fibronectin results in higher expression of activated Lyn kinase. Both in OLs and in the mouse brain, Lyn selectively associates with αvβ3 integrin, not with αvβ5 integrin, leading to suppression of acid sphingomyelinase activity and preventing ceramide-mediated apoptosis. In OLs, knockdown of Lyn with small interfering RNA resulted in OL apoptosis with concomitant accumulation of C16-ceramide due to activation of acid sphingomyelinase (ASMase) and sphingomyelin hydrolysis. Knocking down ASMase partially protected OLs from apoptosis. In the brain, ischemia/reperfusion (IR) triggered rearrangements in the αvβ3 integrin-Lyn kinase complex leading to disruption of Lyn kinase-mediated suppression of ASMase activity. Thus, co-immunoprecipitation studies revealed an increased association of αvβ3 integrin-Lyn kinase complex with ionotropic glutamate receptor subunits, GluR2 and GluR4, after cerebral IR. Sphingolipid analysis of the brain demonstrated significant accumulation of ceramide and sphingomyelin hydrolysis. The data suggest a novel mechanism for regulation of ASMase activity during cell adhesion in which Lyn acts as a key upstream kinase that may play a critical role in cerebral IR injury. [ABSTRACT FROM AUTHOR]
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- 2008
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14. Aerial warfare: An inducible production of volatile bioactive metabolites in a novel species of Scytinostroma sp.
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Olivier, Françios A.B., Bang, Kyung W., Zarate, Erica, Kinzurik, Matias, Chudakova, Daria, Ganley, Austen R.D., and Villas-Boas, Silas G.
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AIR warfare , *GAS chromatography/Mass spectrometry (GC-MS) , *METABOLITES , *CANDIDA albicans , *AXENIC cultures , *FILAMENTOUS fungi , *VOLATILE organic compounds , *MICROBIAL metabolites - Abstract
[Display omitted] • Scytinostroma sp. produces a variety of volatile antibiotic compounds. • The major antimicrobial produced by Scytinostroma sp. is the sesquiterpene isovelleral. • Long-term culture of Scytinostroma sp. led to decreased antimicrobial activity. • Antimicrobial activity was restored by culturing the fungus on C. albicans spent medium. • This is the first report of isovelleral production by a member of Lachnocladiaceae family. Antimicrobial volatile organic compounds (VOCs) may provide fungi an advantage over other competing microorganisms. As these defensive metabolites are often produced in response to microbial competitors, they are easily overlooked in axenic cultures. We used media supplemented with spent medium from Candida albicans to induce the expression of a broad-spectrum antimicrobial response in a previously uncharacterised white-rot fungus, Scytinostroma sp. Crude extractions of Scytinostroma sp. metabolites were found to be cytotoxic to fibroblast cells and antimicrobial to filamentous fungi, yeasts and Gram-positive bacteria. Volatile antimicrobial activity was observed for Scytinostroma sp. cultures and metabolite extracts using antimicrobial assays in bi-compartmentalised plates. Culture headspace analysis using solid-phase microextraction (SPME) coupled to gas chromatography-mass spectrometry (GC–MS) revealed a pronounced shift in Scytinostroma sp. VOCs when cultured on media supplemented with C. albicans spent medium. We observed a significant increase in the levels of 45 identified VOCs, including 7 metabolites with reported antimicrobial activity. Using preparative HPLC combined with GC–MS, we determined that isovelleral is likely to be the main broad-spectrum antimicrobial metabolite produced by Scytinostroma sp. Isovelleral is a sesquiterpene dialdehyde with both antibiotic and antifeedant properties, previously detected in fruit bodies of other Basidiomycetes. [ABSTRACT FROM AUTHOR]
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- 2022
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