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Hybrid crops are underutilized in many developing countries. Subsistence farmers in sub-Saharan Africa (SSA) rely predominantly on outdated hybrids and open-pollinated varieties, which has limited the region's ability to achieve food security and agricultural sustainability goals. Key challenges in SSA include lack of access to improved hybrid seed, insufficient infrastructure to support a formal seed system, and limited smallholder farmer access to input and output markets. Implementing improved seed systems and creating greater market access will require engagement from the public and private sector and the governments within Africa. This paper reviews the importance of hybrids in agriculture, the challenges associated with creating new hybrids, and the technological advancements that will enable more efficient production of quality hybrids in Africa.

Of the four major dwarfing genes described in sorghum, only Dw3 has been cloned. We used association mapping to characterize the phenotypic effects of the dw3 mutation and to fine map a second, epistatic dwarfing QTL on sorghum chromosome 9 (Sb-HT9.1). Our panel of 378 sorghum inbreds includes 230 sorghum conversion (SC) lines, which are exotic lines that have been introgressed with dwarfing quantitative trait loci (QTL) from a common parent. The causal mutation in dw3 associates with reduced lower internode length and an elongation of the apex, consistent with its role as an auxin efflux carrier. Lines carrying the dw3 mutation display high haplotype homozygosity over several megabases in the Dw3 region, but most markers linked to Dw3 do not associate significantly with plant height due to allele sharing between Dw3 and dw3 individuals. Using markers with a high mutation rate and the dw3 mutation as an interaction term, significant trait associations were detected across a 7-Mb region around Sb-HT9.1, largely due to higher detection power in the SC lines. Conversely, the likely QTL interval for Sb-HT9.1 was reduced to ∼100 kb, demonstrating that the unique structure of this association panel provides both power and resolution for a genomewide scan.

Sorghum [Sorghum bicolor (L.) Moench] is a C4 cereal grain crop grown primarily in arid and semi-arid regions in the world with limited or no irrigation. Sorghum production fluctuates and largely depends on the amount and distribution of rainfall. Transpiration efficiency (TE), the biomass produced per unit water transpired, could be a potential trait to improve sorghum yield in areas where irrigation is limited. We have developed a mini-lysimetric method that directly measures whole plant TE in sorghum during an early vegetative stage under greenhouse conditions. The method was evaluated with 11 inbred lines and three hybrids under two greenhouse environments. In general, TE determined with the gravimetric method was higher under lower vapor pressure deficit conditions; however, similar rankings in TE were obtained across the experiments. The method described in this report offers a simple, high-throughput, and affordable way to determine the integrated TE in sorghum at an early vegetative stage.

Background Sorghum [Sorghum bicolor (L.) Moench] is ranked as the fifth most important grain crop and serves as a major food staple and fodder resource for much of the world, especially in arid and semi-arid regions. The recent surge in sorghum research is driven by its tolerance to drought/heat stresses and its strong potential as a bioenergy feedstock. Completion of the sorghum genome sequence has opened new avenues for sorghum functional genomics. However, the availability of genetic resources, specifically mutant lines, is limited. Chemical mutagenesis of sorghum germplasm, followed by screening for mutants altered in important agronomic traits, represents a rapid and effective means of addressing this limitation. Induced mutations in novel genes of interest can be efficiently assessed using the technique known as Targeting Induced Local Lesion IN Genomes (TILLING). Results A sorghum mutant population consisting of 1,600 lines was generated from the inbred line BTx623 by treatment with the chemical agent ethyl methanesulfonate (EMS). Numerous phenotypes with altered morphological and agronomic traits were observed from M2 and M3 lines in the field. A subset of 768 mutant lines was analyzed by TILLING using four target genes. A total of five mutations were identified resulting in a calculated mutation density of 1/526 kb. Two of the mutations identified by TILLING and verified by sequencing were detected in the gene encoding caffeic acid O-methyltransferase (COMT) in two independent mutant lines. The two mutant lines segregated for the expected brown midrib (bmr) phenotype, a trait associated with altered lignin content and increased digestibility. Conclusion TILLING as a reverse genetic approach has been successfully applied to sorghum. The diversity of the mutant phenotypes observed in the field, and the density of induced mutations calculated from TILLING indicate that this mutant population represents a useful resource for members of the sorghum research community. Moreover, TILLING has been demonstrated to be applicable for sorghum functional genomics by evaluating a small subset of the EMS-induced mutant lines.