148 results on '"Doncheva, Nadezhda T."'
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2. Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3
3. The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression
4. Visualize omics data on networks with Omics Visualizer, a Cytoscape App
5. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data
6. STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
7. Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability
8. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
9. Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
10. setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.
11. setsApp: Set operations for Cytoscape Nodes and Edges
12. Association Between Variants of PRDM1 and NDP52 and Crohn's Disease, Based on Exome Sequencing and Functional Studies
13. Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.
14. Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
15. Golgi fragmentation – One of the earliest organelle phenotypes in Alzheimer’s disease neurons
16. Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors
17. Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis
18. A quantitative and site-specific atlas of the in vivo citrullinome reveals widespread existence of citrullination
19. Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer’s disease neurons
20. The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
21. The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest
22. Arena3Dweb: Interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration
23. The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production
24. Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease
25. Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks.
26. The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production
27. Referee report. For: Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 2; peer review: 2 approved]
28. STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest.
29. Astrocytic reactivity triggered by defective autophagy and metabolic failure causes neurotoxicity in frontotemporal dementia type 3
30. Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’
31. Referee report. For: Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology [version 1; peer review: 2 approved with reservations]
32. Human pathways in animal models: possibilities and limitations
33. Proceedings of the EuBIC-MS 2020 Developers’ Meeting
34. The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
35. Transcriptome profiling of ulcerative colitis mouse model suggests biomarkers and therapeutic targets for human colitis
36. NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules
37. Visualize omics data on networks with Omics Visualizer, a Cytoscape App
38. Non-Active Site Mutants of HIV-1 Protease Influence Resistance and Sensitisation Towards Protease Inhibitors
39. Referee report. For: Identifier Mapping in Cytoscape: idmapper [version 1; referees: 1 approved, 2 approved with reservations]
40. Referee report. For: Identifier Mapping in Cytoscape [version 2; referees: 3 approved]
41. Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants
42. STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
43. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data
44. The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets.
45. Consistent Prediction of Mutation Effect on Drug Binding in HIV-1 Protease Using Alchemical Calculations
46. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
47. setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
48. Correction: Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
49. Integrative visual analysis of protein sequence mutations
50. setsApp: Set operations for Cytoscape Nodes and Edges
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