32 results on '"Knapp, Ralf"'
Search Results
2. Treatment of MDR, Pre-XDR, XDR, and Rifampicin-Resistant Tuberculosis or in Case of Intolerance to at Least Rifampicin in Austria, Germany, and Switzerland.
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Otto-Knapp, Ralf, Bauer, Torsten, Brinkmann, Folke, Feiterna-Sperling, Cornelia, Friesen, Inna, Geerdes-Fenge, Hilte, Hartmann, Pia, Häcker, Brit, Heyckendorf, Jan, Kuhns, Martin, Lange, Christoph, Maurer, Florian P., Nienhaus, Albert, Priwitzer, Martin, Richter, Elvira, Salzer, Helmut J.F., Schoch, Otto D., Schönfeld, Nicolas, and Schaberg, Tom
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MEDICAL protocols , *COMBINATION drug therapy , *CONSENSUS (Social sciences) , *LINEZOLID , *INDIVIDUALIZED medicine , *RIFAMPIN , *MEDICAL care costs - Abstract
Based on the assessment of new evidence, the World Health Organization (WHO) updated its guidelines for the treatment of drug-resistant tuberculosis (TB) in December 2022. The new recommendations and the latest study data made it necessary to update the existing guideline on the treatment of at least rifampicin-resistant TB (RR-TB) for the German-speaking countries, replacing the respective chapters of the treatment guidelines published in 2022. A shortened treatment of proven RR-TB and multidrug-resistant TB for at least 6 months using the fixed and non-modifiable drug combination of bedaquiline, pretomanid, linezolid, and moxifloxacin (BPaLM) is now also recommended for Austria, Germany, and Switzerland under certain conditions considering the existing barriers for the implementation of the new treatment regimen. For the treatment of pre-extensively drug-resistant (pre-XDR-) TB, an individualized treatment for 18 months continues to be the primary recommendation. The non-modifiable drug combination of bedaquiline, pretomanid, and linezolid (BPaL) may be used alternatively in selected pre-XDR-TB cases, provided that all prerequisites are met. The necessary requirements for using BPaLM and BPaL are presented in detail in this amendment to the consensus-based TB treatment guideline for adult patients. [ABSTRACT FROM AUTHOR]
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- 2024
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3. A global plastid phylogeny of the cliff fern family Woodsiaceae and a two-genus classification of Woodsiaceae with the description of × Woodsimatium nothogen. nov.
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Lu, Ngan Thi, Zhou, Xin-Mao, Zhang, Liang, Knapp, Ralf, Li, Chun-Xiang, Fan, Xue-Ping, Zhou, Lin, Wei, Hong-Jin, Lu, Jin-Mei, Xu, Bo, Peng, Yu-Lan, Gao, Xin-Fen, and Zhang, Li-Bing
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- 2019
4. Availability of drugs for the treatment of multidrug-resistant/rifampicin-resistant tuberculosis in the World Health Organization European Region, October 2023.
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Otto-Knapp, Ralf, Edwards, Suzanne, Kuchukhidze, Giorgi, Kröger, Stefan, Häcker, Brit, Bivol, Stela, and Yedilbayev, Askar
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- 2024
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5. Therapie bei MDR-, prä-XDR-, XDR-Tuberkulose und Rifampicin-Resistenz oder bei Medikamentenunverträglichkeit gegenüber mindestens Rifampicin *.
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Otto-Knapp, Ralf, Bauer, Torsten, Brinkmann, Folke, Feiterna-Sperling, Cornelia, Friesen, Inna, Geerdes-Fenge, Hilte, Hartmann, Pia, Häcker, Brit, Hauer, Barbara, Haas, Walter, Heyckendorf, Jan, Kuhns, Martin, Lange, Christoph, Maurer, Florian P., Nienhaus, Albert, Priwitzer, Martin, Richter, Elvira, Salzer, Helmut J. F., Schoch, Otto, and Schönfeld, Nicolas
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- 2024
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6. Infektionsprävention & Hygiene bei Tuberkulose – Empfehlungen des DZK.
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Witte, Peter, Arvand, Mardjan, Barth, Stefanie, Diel, Roland, Friesen, Inna, Gastmeier, Petra, Häcker, Brit, Hauer, Barbara, Kuhns, Martin, Nienhaus, Albert, Otto-Knapp, Ralf, Richter, Elvira, Wischnewski, Nicoletta, Ziegler, Renate, and Bauer, Torsten
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- 2023
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7. A global phylogeny of grammitid ferns (Polypodiaceae) and its systematic implications.
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Zhou, Xin‐Mao, Yang, Jian‐Jun, Liang, Zhen‐Long, Pollawatn, Rossarin, Knapp, Ralf, Parris, Barbara, Sundue, Michael, Ranker, Tom A., Zhou, Lin, Lu, Ngan Thi, Luong, Thien Tam, Wan, Xia, He, Zhao‐Rong, Zhao, Jing, Zhang, Liang, and Zhang, Li‐Bing
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PHYLOGENY ,NUCLEOTIDE sequencing ,MOLECULAR phylogeny ,FERNS ,GENETIC speciation - Abstract
Grammitidoideae are the largest subfamily in Polypodiaceae and contain about 911 species. Progress has been made in understanding the overall phylogeny and generic boundaries in the light of recent molecular works. However, the majority of species, especially Asian species, and some critical type species of genera remain unsampled. In this study, a dataset of six plastid markers of 1003 (112 new) accessions representing ca. 412 species of Grammitidoideae including the type species of Ctenopterella, Grammitis, Moranopteris, Radiogrammitis, and Themelium, was assembled to infer a phylogeny. Our major results include: (1) the type species of Grammitis is successfully sequenced using a next‐generation sequencing technique and is resolved in Grammitis s.str. as expected; (2) Ctenopterella is found to be polyphyletic and a new clade consisting of C. khaoluangensis is resolved as sister to Tomophyllum; (3) the type species of Ctenopterella is resolved in a clade sister to the C. lasiostipes clade; (4) Oreogrammitis is found to be polyphyletic and three clades outside of the core Oreogrammitis are identified containing O. subevenosa and allies, O. orientalis, and O. beddomeana (+ O. cf. beddomeana); (5) Prosaptia is found to be paraphyletic with P. nutans being sister to a clade containing the rest of Prosaptia and Archigrammitis; (6) the intergeneric and major relationships within the Asia‐Pacific clade are well resolved and strongly supported except for a few branches; (7) extensive cryptic speciation is detected in the Asia‐Pacific clade; and (8) based on the polyphyly of Ctenopterella we describe three new genera, Boonkerdia, Oxygrammitis, and Rouhania, for species formerly in Ctenopterella; because the type species of Grammitis belongs to Grammitis s.str., we describe five new genera, Aenigmatogrammitis, Grammitastrum (stat. nov.), Howeogrammitis, Nanogrammitis, and Thalassogrammitis for species formerly in Grammitis s.l. A key to the 35 Old‐World genera is given, a taxonomic treatment is presented, and the morphology of all new genera is shown with either a color plate and/or a line drawing. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Hepatitis B prevalence and influence on HIV treatment outcome and mortality in the Chilean AIDS Cohort
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Otto-Knapp, Ralf, Cortes, Claudia P., Saavedra, Felipe, Wolff, Marcelo, and Weitzel, Thomas
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- 2013
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9. Tuberkulose im Erwachsenenalter: Eine S2k-Leitlinie zur Diagnostik und Therapie, Chemoprävention und Chemoprophylaxe der Tuberkulose im Erwachsenenalter des Deutschen Zentralkomitees zur Bekämpfung der Tuberkulose e. V. (DZK) und der Deutschen Gesellschaft für Pneumologie und Beatmungsmedizin e. V. (DGP) *
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Schaberg, Tom, Brinkmann, Folke, Feiterna-Sperling, Cornelia, Geerdes-Fenge, Hilte, Hartmann, Pia, Häcker, Brit, Hauer, Barbara, Haas, Walter, Heyckendorf, Jan, Lange, Christoph, Maurer, Florian P., Nienhaus, Albert, Otto-Knapp, Ralf, Priwitzer, Martin, Richter, Elvira, Salzer, Helmut J.F., Schoch, Otto, Schönfeld, Nicolas, Stahlmann, Ralf, and Bauer, Torsten
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- 2022
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10. Untersuchung auf Tuberkulose bei geflüchteten Kindern und Jugendlichen aus der Ukraine: Eine Handlungsempfehlung des Deutschen Zentralkomitees zur Bekämpfung der Tuberkulose e. V. (DZK) in Zusammenarbeit mit der Arbeitsgruppe Leitlinie Tuberkulose im Kindes- und Jugendalter und der Gesellschaft für pädiatrische Pneumologie (GPP)
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Brinkmann, Folke, Feiterna-Sperling, Cornelia, Günther, Annette, Breuer, Cornelia, Hartmann, Pia, Hufnagel, Markus, Priwitzer, Martin, Otto-Knapp, Ralf, Witte, Peter, Diel, Roland, and Häcker, Brit
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- 2022
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11. Risk Assessment for Patients with Chronic Respiratory Conditions in the Context of the SARS-CoV-2 Pandemic Statement of the German Respiratory Society with the Support of the German Association of Chest Physicians.
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Lommatzsch, Marek, Rabe, Klaus F., Taube, Christian, Joest, Marcus, Kreuter, Michael, Wirtz, Hubert, Blum, Torsten Gerriet, Kolditz, Martin, Geerdes-Fenge, Hilte, Otto-Knapp, Ralf, Häcker, Brit, Schaberg, Tom, Ringshausen, Felix C., Vogelmeier, Claus F., Reinmuth, Niels, Reck, Martin, Gottlieb, Jens, Konstantinides, Stavros, Meyer, Joachim, and Worth, Heinrich
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LUNG diseases ,CHRONIC diseases ,RISK assessment ,MEDICAL protocols ,COVID-19 pandemic ,MEDICAL societies - Abstract
Assessing the risk for specific patient groups to suffer from severe courses of COVID-19 is of major importance in the current SARS-CoV-2 pandemic. This review focusses on the risk for specific patient groups with chronic respiratory conditions, such as patients with asthma, chronic obstructive pulmonary disease, cystic fibrosis (CF), sarcoidosis, interstitial lung diseases, lung cancer, sleep apnea, tuberculosis, neuromuscular diseases, a history of pulmonary embolism, and patients with lung transplants. Evidence and recommendations are detailed in exemplary cases. While some patient groups with chronic respiratory conditions have an increased risk for severe courses of COVID-19, an increasing number of studies confirm that asthma is not a risk factor for severe COVID-19. However, other risk factors such as higher age, obesity, male gender, diabetes, cardiovascular diseases, chronic kidney or liver disease, cerebrovascular and neurological disease, and various immunodeficiencies or treatments with immunosuppressants need to be taken into account when assessing the risk for severe COVID-19 in patients with chronic respiratory diseases. [ABSTRACT FROM AUTHOR]
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- 2022
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12. A global phylogeny of Lycopodiaceae (Lycopodiales; lycophytes) with the description of a new genus, Brownseya, from Oceania.
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Chen, De‐Kui, Zhou, Xin‐Mao, Rothfels, Carl J., Shepherd, Lara D., Knapp, Ralf, Zhang, Liang, Lu, Ngan Thi, Fan, Xue‐Ping, Wan, Xia, Gao, Xin‐Fen, He, Hai, and Zhang, Li‐Bing
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LYCOPHYTES ,PARSIMONIOUS models ,PHYLOGENY ,CLUB mosses ,BAYESIAN field theory ,DNA sequencing - Abstract
Lycopodiaceae are one of the oldest lineages of any living vascular plants and contain about 400 species distributed on all continents except Antarctica, with its highest diversity in tropical regions. Previous studies on the morphology, anatomy, and molecular systematics of Lycopodiaceae have made substantial progress in understanding the diversity and evolution of the family, but major issues remain. In particular, earlier studies had relatively sparse taxon sampling, some critical relationships among the genera have not been well resolved, and the monophyly of some genera (e.g., Huperzia, Lycopodiella, Pseudolycopodiella, Spinulum) has not been robustly tested with large sampling. In this study, we apply maximum likelihood, maximum parsimony, and Bayesian inference to a dataset of 1150 (918 newly generated) DNA sequences of seven plastid markers (atpA, psbA‐trnH, rbcL, rps4, rps4‐trnS, trnL, trnL‐F) of 334 accessions representing ca. 155 (ca. 39% of all) species in the family to infer a global phylogeny. Our major results include: (1) the tree is resolved into three primary clades corresponding to the three subfamilies, Huperzioideae, Lycopodioideae, and Lycopodielloideae; (2) these three primary clades are resolved into 17 major clades, of which 16 represent genera recognized in the PPG I classification, while Lycopodiella serpentina is resolved as sister to Palhinhaea, and thus a new genus, Brownseya, is described, and a key to genera of Lycopodielloideae is given; (3) Phylloglossum is strongly or moderately supported as sister to Phlegmariurus in ML and MP analyses (but not in BI analysis), and thus our evidence supports the recognition of Phlegmariurus in order to maintain a monophyletic Huperzia; (4) Lycopodiella is sister to Pseudolycopodiella and they together are sister to Lateristachys + (Brownseya + Palhinhaea); (5) Huperzia, Lycopodiella, Pseudolycopodiella, and Spinulum are each strongly supported as monophyletic; (6) spore morphology is well consistent with the phylogenetic relationships in the family; and (7) based on these results we recognize 17 genera in three subfamilies in the family. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Evolutionary relationships of the ancient fern lineage the adder's tongues (Ophioglossaceae) with description of Sahashia gen. nov.
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Zhang, Liang, Fan, Xue‐Ping, Petchsri, Sahanat, Zhou, Lin, Pollawatn, Rossarin, Zhang, Xin, Zhou, Xin‐Mao, Thi Lu, Ngan, Knapp, Ralf, Chantanaorrapint, Sahut, Limpanasittichai, Ponpipat, Sun, Hang, Gao, Xin‐Fen, and Zhang, Li‐Bing
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MOLECULAR recognition ,SPECIES diversity ,ENDOPHYTIC fungi ,FERNS ,NUCLEOTIDE sequence ,HYPOGLOSSAL nerve - Abstract
As an ancient lineage of ferns, Ophioglossaceae are evolutionarily among the most fascinating because they have the highest chromosome count of any known organism as well as the presence of sporophores, subterranean gametophytes, eusporangiate sporangia without annuli, and endophytic fungi. Previous studies have produced conflicting results, identifyingsome lineages with unresolved relationships, and have paid much attention to the subfamily Botrychioideae. But the other species‐rich subfamily, Ophioglossoideae, has remained largely understudied and only up to 12 accessions of Ophioglossoideae have been sampled. In this study, DNA sequences of seven plastid markers of 149 accessions (75 in Ophioglossoideae) representing approximately 82 species (approximately 74% of estimated species diversity sensu J. Syst. Evol., 2016, 54, 563) in the family, and two Marattiaceae and two Psilotaceae, are used to infer a phylogeny. Our major results include: (1) Ophioglossaceae are resolved as monophyletic with strong support, and so are all four subfamilies and genera sensu PPG I except Botrypus and Ophioglossum; (2) a new genus Sahashia is segregated from Botrypus so that the monophyly of Botrypus can be retained; (3) the monophyly of Ophioglossum in its current circumscription is uncertain in spite of our large character sampling; (4) there is substantial cryptic speciation in Ophioderma detected by our molecular and morphological study; (5) the recognition of Holubiella is advocated based on its morphology and its sister relationship with Sceptridium; and (6) a novel sister relationship between Botrychium and the JHS clade (Japanobotrychium + (Holubiella + Sceptridium)) is discovered. [ABSTRACT FROM AUTHOR]
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- 2020
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14. A global plastid phylogeny of the fern genus Asplenium (Aspleniaceae).
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Xu, Ke‐Wang, Zhang, Liang, Rothfels, Carl J., Smith, Alan R., Viane, Ronald, Lorence, David, Wood, Kenneth R., Chen, Cheng‐Wei, Knapp, Ralf, Zhou, Lin, Lu, Ngan Thi, Zhou, Xin‐Mao, Wei, Hong‐Jin, Fan, Qiang, Chen, Su‐Fang, Cicuzza, Daniele, Gao, Xin‐Fen, Liao, Wen‐Bo, and Zhang, Li‐Bing
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PHYLOGENY ,CHLOROPLAST DNA ,SPECIES diversity ,FERNS ,NUCLEOTIDE sequence ,GENETIC speciation ,MOLECULAR evolution ,MOLECULAR phylogeny - Abstract
The infrageneric relationships and taxonomy of the largest fern genus, Asplenium (Aspleniaceae), have remained poorly understood. Previous studies have focused mainly on specific species complexes involving a few or dozens of species only, or have achieved a large taxon sampling but only one plastid marker was used. In the present study, DNA sequences from six plastid markers (atpB, rbcL, rps4, rps4‐trnS, trnL and trnL‐F) of 1030 accessions (616 of them newly sequenced here) representing c. 420 species of Asplenium (60% of estimated species diversity), 16 species of Hymenasplenium, three Diplaziopsidaceae, and four Rhachidosoraceae were used to produce the largest genus‐level phylogeny yet for ferns. Our major results include: (i) Asplenium as broadly circumscribed is monophyletic based on our inclusion of representatives of 32 of 38 named segregate genera; (ii) 11 major clades in Asplenium are identified, and their relationships are mostly well‐resolved and strongly supported; (iii) numerous species, unsampled in previous studies, suggest new relationships and numerous cryptic species and species complexes in Asplenium; and (iv) the accrued molecular evidence provides an essential foundation for further investigations of complex patterns of geographical diversification, speciation and reticulate evolution in this family. [ABSTRACT FROM AUTHOR]
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- 2020
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15. A global plastid phylogeny of the cliff fern family Woodsiaceae and a two‐genus classification of Woodsiaceae with the description of ×Woodsimatium nothogen. nov.
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Lu, Ngan Thi, Zhou, Xin‐Mao, Zhang, Liang, Knapp, Ralf, Li, Chun‐Xiang, Fan, Xue‐Ping, Zhou, Lin, Wei, Hong‐Jin, Lu, Jin‐Mei, Xu, Bo, Peng, Yu‐Lan, Gao, Xin‐Fen, and Zhang, Li‐Bing
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PHYLOGENY ,FERNS ,CLIFFS ,CLASSIFICATION ,NUCLEOTIDE sequence ,MOLECULAR phylogeny ,CHLOROPLAST DNA ,TRANSCRANIAL direct current stimulation - Abstract
The taxonomy of the cliff fern family Woodsiaceae has been controversial with 22–59 species in 1–7 genera recognized in various classifications. This is mainly due to limited taxon sampling (up to 33 accessions representing up to 21 species) and poor resolution in molecular studies so far. In the present study, DNA sequences of five plastid markers (atpA, matK, rbcL, rps4 + rps4‐trnS, trnL + trnL‐F) of 152 accessions representing ca. 43 out of ca. 65 species estimated of Woodsiaceae (122 accessions), and 30 non‐Woodsiaceae accessions from the most closely related four families (Athyriaceae, Blechnaceae, Onocleaceae, Thelypteridaceae) were used to infer a phylogeny. Our major results include: (1) Woodsiaceae are strongly supported as monophyletic; (2) Two major clades representing the deepest split in Woodsiaceae are identified, corresponding to the two recently proposed subfamilies, Woodsioideae and Protowoodsioideae; (3) Within Woodsioideae and Protowoodsioideae, two and three well‐supported subclades, respectively, are determined; (4) Cheilanthopsis is resolved as paraphyletic in relation to Hymenocystis (sampled for the first time) and Protowoodsia; (5) Physematium and Woodsiopsis are paraphyletic in relation to a clade containing Cheilanthopsis, Hymenocystis, and Protowoodsia; (6) Evolution of 13 morphological characters is inferred in a phylogenetic context, and morphological synapomorphies of each of the five major subclades are identified; (7) We propose to recognize two genera in Woodsiaceae based on deep divergence (ca. 45 Ma), morphology, chromosome number, and geographic distribution: Physematium (syn.: Cheilanthopsis, Hymenocystis, Protowoodsia, Woodsiopsis) and Woodsia (syn.: Eriosoriopsis), and Physematium is further divided into three subgenera and Woodsia into two subgenera; (8) we describe ×Woodsimatium, a hybrid genus (nothogen. nov.) between the two genera recognized. A taxonomic synopsis of the family is provided, and 15 new combinations are made. [ABSTRACT FROM AUTHOR]
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- 2019
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16. Migration und Tuberkulose.
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Othmer, J. Till, Schönfeld, Nicolas, Häcker, Brit, Knapp, Ralf Otto, and Bauer, Torsten T.
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- 2019
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17. The identity of Hypolepis robusta, as a new synonym of Hypolepis alpina (Dennstaedtiaceae), based on morphology and DNA barcoding and the new distribution.
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Morigengaowa, Jun-Jie Luo, Knapp, Ralf, Hong-Jin Wei, Bao-Dong Liu, Yue-Hong Yan, and Hui Shang
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DENNSTAEDTIACEAE ,GENETIC barcoding ,PLANT morphology - Abstract
Based on field observations and examinations of herbarium specimens (including type material), consulting the original literature and molecular phylogenetic analysis of the rbcL and trnL-F sequences, it is concluded that Hypolepis robusta is conspecific with Hypolepis alpina and is here formally treated as a synonym of it. Additionally H. alpina is reported with new distribution records in Guangdong, Guangxi and the Hainan Island of China, respectively. [ABSTRACT FROM AUTHOR]
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- 2018
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18. S2k-Leitlinie: Tuberkulose im Erwachsenenalter.
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Schaberg, Tom, Bauer, Torsten, Brinkmann, Folke, Diel, Roland, Feiterna-Sperling, Cornelia, Haas, Walter, Hartmann, Pia, Hauer, Barbara, Heyckendorf, Jan, Lange, Christoph, Nienhaus, Albert, Otto-Knapp, Ralf, Priwitzer, Martin, Richter, Elvira, Rumetshofer, Rudolf, Schenkel, Karl, Schoch, Otto Dagobert, Schönfeld, Nicolas, and Stahlmann, Ralf
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- 2017
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19. A large-scale phylogeny of the lycophyte genus Selaginella (Selaginellaceae: Lycopodiopsida) based on plastid and nuclear loci.
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Zhou, Xin‐Mao, Rothfels, Carl J., Zhang, Liang, He, Zhao‐Rong, Le Péchon, Timothée, He, Hai, Lu, Ngan Thi, Knapp, Ralf, Lorence, David, He, Xing‐Jin, Gao, Xin‐Fen, and Zhang, Li‐Bing
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SELAGINELLALES ,LYCOPHYTES ,INSECT phylogeny ,MAXIMUM likelihood statistics ,BAYESIAN analysis - Abstract
The lycophyte genus Selaginella alone constitutes the family Selaginellaceae, the largest of the lycophyte families. The genus is estimated to contain 700-800 species distributed on all continents except Antarctica, with highest species diversity in tropical and subtropical regions. The monophyly of Selaginella in this broad sense has rarely been doubted, whereas its intrageneric classification has been notoriously contentious. Previous molecular studies were based on very sparse sampling of Selaginella (up to 62 species) and often used DNA sequence data from one genome. In the present study, DNA sequences of one plastid ( rbcL) and one nuclear ( ITS) locus from 394 accessions representing approximately 200 species of Selaginella worldwide were used to infer a phylogeny using maximum likelihood, Bayesian inference and maximum parsimony methods. The study identifies strongly supported major clades and well resolves relationships among them. Major results include: (i) six deep-level clades are discovered representing the deep splits of Selaginella; and (ii) 20 major clades representing 20 major evolutionary lineages are identified, which differ from one another in molecular, macro-morphological, ecological and spore features, and/or geographical distribution. [ABSTRACT FROM AUTHOR]
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- 2016
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20. Soluble poly(1,1′-ferrocenylene- p-terphenyl-4,4″-ylene)s via Pd-catalyzed polycondensation.
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Knapp, Ralf and Rehahn, Matthias
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- 1993
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21. Leucostegia amplissima, the Third Species of the Genus (Hypodematiaceae)
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Chen, Cheng-Wei, Tang, Sheng Kai, Knapp, Ralf, Mustapeng Andi, Maryani A., Lu, Ping-Fong, Kessler, Michael, and Huang, Yao-Moan
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- 2021
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22. Synthesis and material properties of soluble poly(1,1′-ferrocenylene- alt- p-oligophenylenes)
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Knapp, Ralf, Velten, Ulf, and Rehahn, Matthias
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- 1998
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23. Palladium-catalyzed arylation of ferrocene derivatives: a convenient high yield route to 1,1′-bis(halophenyl)ferrocenes
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Knapp, Ralf and Rehahn, Matthias
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- 1993
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24. A plastid phylogeny of the Old World fern genus Leptochilus (Polypodiaceae): Implications for cryptic speciation and progressive colonization from lower to higher latitudes.
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Zhang, Liang, Lu, Ngan Thi, Zhou, Xin-Mao, Chen, De-Kui, Knapp, Ralf, Zhou, Lin, Guo, Lei, Luong, Thien Tam, Sun, Hang, Gao, Xin-Fen, and Zhang, Li-Bing
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GENETIC speciation , *PLANT phylogeny , *PLANT evolution , *PLANT species , *MICROSORUM , *PLASTIDS - Abstract
Graphical abstract Highlights • A large sampling (105 accessions vs. 2–16 accessions in earlier studies) has been achieved. • The species number of the genus is likely to double the most recent estimate following our study. • Leptochilu s is monophyletic and resolved as nested within the microsoroid ferns. • Major evolutionary lineages have been identified. • Leptochilus might have evolved at lower latitudes and progressively dispersed to and colonized higher latitudes. Abstract The newly defined fern genus Leptochilus contains about 50 species occurring in subtropical to tropical Asia and adjacent Pacific islands. The circumscription and phylogeny of the genus have been ambiguous and its species had been included in various genera such as Colysis , Dendroglossa , Kontumia , Microsorum , and Paraleptochilus. Previous molecular studies sampled only 2–4 molecular markers and 2–16 accessions of Leptochilus. In the present study, DNA sequences of six plastid markers of 105 accessions representing ca. 40 species of Leptochilus , including types of Colysis, Kontumia, Leptochilus, and Paraleptochilus , 39 species of six non- Leptochilus genera of Microsoroideae, and one species of Pyrrosia , are used to infer a phylogeny. Our major results include: (1) Leptochilu s is monophyletic and resolved as nested within the microsoroid ferns, but its relationships with other members of Microsoroideae are not well resolved; (2) Six well-supported major clades in Leptochilus are recognized, differing from one another in molecular, morphological, and geographical features; (3) Species related to L. macrophyllus representing earliest split in Leptochilus are identified; (4) The inclusion of Microsorum pteropus in Leptochilus is confirmed, whereas M. insigne is closely related to Leptochilus but not resolved as a member of the genus; (5) The species number of the genus is likely to double the most recent estimate following our study, and quite a few cryptic species should be recognized; and (6) A basal grade formed by three major clades is recovered and they are composed of species almost exclusively distributed at lower latitudes (the Malay Archipelago), whereas the shallow-level clades contain species distributed at mainly higher latitudes, suggesting that Leptochilus might have evolved at lower latitudes and progressively dispersed to and colonized higher latitudes. [ABSTRACT FROM AUTHOR]
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- 2019
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25. A plastid phylogeny of the fern genus Arachniodes (Dryopteridaceae).
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Lu, Ngan Thi, Ebihara, Atsushi, He, Hai, Zhang, Liang, Zhou, Xin-Mao, Knapp, Ralf, Kamau, Peris, Lorence, David, Gao, Xin-Fen, and Zhang, Li-Bing
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DRYOPTERIDACEAE , *MOLECULAR phylogeny , *TAXONOMY , *DRYOPTERIS , *BAYESIAN analysis - Abstract
Graphical abstract Highlights • Arachniodes is a notoriously known for its taxonomic difficulty and chaos. • A large global sampling (275 accessions vs. 2–17 accessions in earlier studies) is achieved. • Arachniodes s.s. is monophyletic and resolved into 12 major clades. • The New World Arachniodes is not monophyletic. • Arachniodes might contain 83 species worldwide. Abstract Arachniodes (Dryopteridaceae) is one of the most confusing and controversial fern genera in terms of its circumscription, nomenclature, and taxonomy. Estimates of species number range from 40 to 200. Previous molecular works included only 2–17 accessions representing 2–12 species of Arachniodes and allied genera, leaving most of the Asian species remain unsampled and the infragneric relationships unclear. In this study DNA sequences of seven plastid markers of 343 accessions representing ca. 68 species of Arachniodes (275 accessions), and 64 outgroup accessions from subfam. Dryopteridoideae and subfam. Polybotryoideae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) Two species currently assigned in Arachniodes (A. macrostegia and A. ochropteroides are resolved outside of the core Arachniodes making the currently defined Arachniodes polyphyletic, confirming earlier findings; (2) Lithostegia , Leptorumohra , and Phanerophlebiopsis are indeed synonyms of Arachniodes ; (3) Leptorumohra is confirmed to be monophyletic, but Phanerophlebiopsis is polyphyletic; (4) The New World species of Arachniodes are confirmed to be not monophyletic with A. denticulata being nested within the Old World species, suggesting that this species is dispersed from the Old World; (5) Arachniodes s.s is resolved into 12 major clades, some of which are further divisable into recognizable subclades and groups, with A. mutica from Japan being resolved as the sister to the rest of the genus; (6) A number of systematic implications of the phylogeny have been suggested; and (7) the genus is estimated to contain ca. 83 species. [ABSTRACT FROM AUTHOR]
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- 2019
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26. A global plastid phylogeny uncovers extensive cryptic speciation in the fern genus Hymenasplenium (Aspleniaceae).
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Xu, Ke-Wang, Zhou, Xin-Mao, Yin, Qian-Yi, Zhang, Liang, Lu, Ngan Thi, Knapp, Ralf, Luong, Thien Tam, He, Hai, Fan, Qiang, Zhao, Wan-Yi, Gao, Xin-Fen, Liao, Wen-Bo, and Zhang, Li-Bing
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PHYLOGENY , *PLASTIDS , *ASPLENIACEAE , *NUCLEOTIDE sequencing , *SPECIES diversity - Abstract
The fern genus Hymenasplenium (Aspleniaceae) is one of the two genera in the family. It is generally recognized among modern pteridologists. However, its infrageneric relationships and species diversity have been unclear and controversial. The molecular studies so far have had small taxon and character sampling. In the present study, DNA sequences of six plastid markers of 158 accessions representing ca. 40 out of ca. 50 known species of Hymenasplenium , and 16 species of Asplenium were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) Hymenasplenium as currently defined is strongly supported as monophyletic; (2) three major clades representing early splits in Hymenasplenium are identified, with the Old World species being strongly supported as monophyletic; it is ambiguous if the New World species are monophyletic; (3) extensive cryptic speciation in the Old World is discovered demonstrating the complexity of evolution of the genus; and (4) six strongly or moderately supported subclades in the Old World clade are revealed, differing from one another in molecular, morphological, and geographical features. [ABSTRACT FROM AUTHOR]
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- 2018
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27. A plastid phylogeny and character evolution of the Old World fern genus Pyrrosia (Polypodiaceae) with the description of a new genus: Hovenkampia (Polypodiaceae).
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Zhou, Xin-Mao, Zhang, Liang, Chen, Cheng-Wei, Li, Chun-Xiang, Huang, Yao-Moan, Chen, De-Kui, Lu, Ngan Thi, Cicuzza, Daniele, Knapp, Ralf, Luong, Thien Tam, Nitta, Joel H., Gao, Xin-Fen, and Zhang, Li-Bing
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POLYPODIACEAE , *PLASTIDS , *PLANT phylogeny , *PLANT evolution , *PLANT morphology - Abstract
The Old World fern genus Pyrrosia (Polypodiaceae) offers a rare system in ferns to study morphological evolution because almost all species of this genus are well studied for their morphology, anatomy, and spore features, and various hypotheses have been proposed in terms of the phylogeny and evolution in this genus. However, the molecular phylogeny of the genus lags behind. The monophyly of the genus has been uncertain and a modern phylogenetic study of the genus based on molecular data has been lacking. In the present study, DNA sequences of five plastid markers of 220 accessions of Polypodiaceae representing two species of Drymoglossum , 14 species of Platycerium , 50 species of Pyrrosia , and the only species of Saxiglossum (subfamily Platycerioideae), and 12 species of other Polypodiaceae representing the remaining four subfamilies are used to infer a phylogeny of the genus. Major results and conclusions of this study include: (1) Pyrrosia as currently circumscribed is paraphyletic in relation to Platycerium and can be divided into two genera: Pyrrosia s.s. and Hovenkampia (gen. nov.), with Hovenkampia and Platycerium forming a strongly supported clade sister to Pyrrosia s.s.; (2) Subfamily Platycerioideae should contain three genera only, Hovenkampia, Platycerium , and Pyrrosia s.s.; (3) Based on the molecular phylogeny, macromorphology, anatomical features, and spore morphology, four major clades in the genus are identified and three of the four are further resolved into four, four, and six subclades, respectively; (4) Three species, P. angustissima , P. foveolata , and P. mannii , not assigned to any groups by Hovenkamp (1986) because of their unusual morphology, each form monospecific clades; (5) Drymoglossum is not monophyletic and those species previously assigned to this genus are resolved in two different subclades; (6) Saxiglossum is resolved as the first lineage in the Niphopsis clade; and (7) The evolution of ten major morphological characters in the subfamily is inferred based on the phylogeny and various morphological synapomorphies for various clades and subclades are identified. [ABSTRACT FROM AUTHOR]
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- 2017
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28. A global phylogeny of the fern genus Tectaria (Tectariaceae: Polypodiales) based on plastid and nuclear markers identifies major evolutionary lineages and suggests repeated evolution of free venation from anastomosing venation.
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Zhang, Liang, Zhou, Xin-Mao, Chen, De-Kui, Schuettpelz, Eric, Knapp, Ralf, Lu, Ngan Thi, Luong, Thien Tam, Dang, Minh Tri, Duan, Yi-Fan, He, Hai, Gao, Xin-Fen, and Zhang, Li-Bing
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DRYOPTERIDACEAE , *PLANT phylogeny , *PLASTIDS , *BIOMARKERS , *PLANTS , *PLANT evolution - Abstract
Tectaria (Tectariaceae) is one of the most confusing fern genera in terms of its circumscription and phylogeny. Since its original description, a number of genera had been moved into or related with this genus, while others had been segregated from it. Tectaria is also among the largest fern genera, comprising 150–210 mostly tropical species. Previous molecular studies have been far from comprehensive (sampling no more than 76 accessions from 52 species), limited in geographic scope (mainly restricted to Asia), and based exclusively on plastid markers. In the present study, DNA sequences of eight plastid and one nuclear marker of 360 accessions representing ca. 130 species of Tectaria , ca. 36 species of six non- Tectaria genera in Tectariaceae, 12 species of Davalliaceae, Oleandraceae, and Polypodiaceae, and 13 species of Lomariopsidaceae were used to infer a phylogeny with maximum likelihood, Bayesian inference, and maximum parsimony approaches. Our major results include: (1) the most recently proposed circumscription of Tectaria is strongly supported as monophyletic; (2) the genera Lenda , Microbrochis , Phlebiogonium , and Sagenia , sampled here for the first time, are resolved as part of Tectaria ; (3) four superclades representing early splits in Tectaria are identified, with the Old World species being sister to the New World species; (4) 12 well-supported major clades in Tectaria are revealed, differing from one another in molecular, morphological, and geographical features; (5) evolution of 13 morphological characters is inferred in a phylogenetic context and morphological synapomorphies of various clades are identified; and in particular (6) free venation in Tectaria is inferred to be repeatedly derived from anastomosing venation, an evolutionary phenomenon not documented previously in vascular plants in a phylogenetic context based on both plastid and nuclear evidence. [ABSTRACT FROM AUTHOR]
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- 2017
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29. Phylogeny, character evolution, and biogeography of the fern genus Bolbitis (Dryopteridaceae).
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Nie, Li-Yun, Zhang, Liang, Liang, Zhen-Long, Pollawatn, Rossarin, Yan, Yue-Hong, Thi Lu, Ngan, Knapp, Ralf, Wan, Xia, Cicuzza, Daniele, Cheng, Xin-Xin, Chen, Hong-Feng, Wang, Ai-Hua, Liao, Yu-Jie, Wang, Fa-Guo, and Zhang, Li-Bing
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PHYLOGENY , *MOLECULAR phylogeny , *FERNS , *BIOGEOGRAPHY , *DNA sequencing - Abstract
[Display omitted] • 169 accessions representing ca. 68 (85% of total) species of Bolbitis are sampled. • Species of Bolbitis are resolved into four major clades. • Six well-supported subclades are identified in the most speciose Asian clade. • Evolution of six characters is analyzed and free venation evolved from anastomosing venation in Bolbitis. • Bolbitis originated from Africa and a dispersal from Asia resulted in continental disjunction between Africa and America. Bolbitis is a pantropical fern genus of Dryopteridaceae with ca. 80 species mainly in tropical Asia. Earlier studies confirmed the monophyly of Bolbitis when Mickelia is excluded and identified three major clades in Bolbitis. However, earlier studies are based on relatively small sampling and the majority of Asian species are not sampled. In this study, DNA sequences of three plastid markers of 169 accessions representing ca. 68 (85 % of total) species of Bolbitis in nine out of the 10 series recognized by Hennipman (1977), and 54 accessions representing the five remaining bolbitidoid genera are used to infer a global phylogeny with a focus on Asian species. The major results include: (1) Bolbitis is strongly supported as monophyletic; (2) species of Bolbitis are resolved into four major clades and their relationships are: the Malagasy/Mascarene clade is sister to the rest, followed by the African clade which is sister to the American clade + the Asian clade; (3) six well-supported subclades are identified in the most speciose Asian clade; (4) the free-veined Egenolfia is embedded in Bolbitis and is paraphyletic in relation to species with anastomosing venation; (5) three series sensu Hennipman (1977), B. ser. Alienae , B. ser. Egenolfianae , and B. ser. Heteroclitae , are paraphyletic or polyphyletic; (6) evolution of six morphological characters is analyzed and free venation is found to have evolved from anastomosing venation and reversed to free venation in Bolbitis ; and (7) biogeographical implications are drawn and it is shown that a single recent dispersal from Asia resulted in continental disjunction of closely related ferns of Bolbitis between Africa and America. [ABSTRACT FROM AUTHOR]
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- 2023
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30. Phylogeny, biogeography, and character evolution in the fern family Hypodematiaceae.
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Fan, Xue-Ping, Thi Lu, Ngan, Li, Chun-Xiang, Knapp, Ralf, He, Hai, Zhou, Xin-Mao, Wan, Xia, Zhang, Liang, Gao, Xin-Fen, and Zhang, Li-Bing
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MOLECULAR phylogeny , *PHYLOGENY , *BIOGEOGRAPHY , *FERNS , *MOLECULAR recognition - Abstract
[Display omitted] • Hypodematiaceae are found to be sister to the remaining eupolypods I. • Hypodematium is resolved into seven clades. • A latest Jurassic-earliest Cretaceous origin of the family and an Upper Cretaceous origin of two genera are inferred. • Hypodematium appears to have originated from East Asia and dispersed to Africa and Southeast Asia. • Leucostegia appears to have originated from Southeast Asia and/or East Asia. The Old World fern genera Hypodematium and Leucostegia had long been placed in the families Dryopteridaceae and Davalliaceae, respectively, before the advent of molecular phylogenetics. Recent molecular studies confirmed the recognition of the family Hypodematiaceae composed of these two genera, but the relationships within each of these two genera have been unclear. In the present study we performed phylogenetic analyses (MP, ML, BI) based on DNA data from six plastid markers (atpB , atpB-rbcL , matK , rbcL , rps4 & rps4-trnS , and trnL & trnL-F) of 165 accessions representing 31 species in two genera of Hypodematiaceae as the ingroup and 26 accessions representing Cystopteridaceae, Didymochlaenaceae, Dryopteridaceae, Davalliaceae, Oleandraceae, and Woodsiaceae as the outgroups. Our analyses supported the monophyly of the currently defined Hypodematiaceae only including Hypodematium and Leucostegia and found that the family to be sister to the remaining eupolypods I. Our data resolved three taxa of Leucostegia into two clades. In Hypodematium , 28 taxa are resolved into seven strongly supported clades or single-accession clades. The evolution of important morphological characters are inferred in the phylogenetic context. Our dated phylogeny suggested a latest Jurassic-earliest Cretaceous origin of the family and Upper Cretaceous origin of two genera, with Hypodematiaceae originated from East Asia; extant lineages of Hypodematium originated from East Asia and subsequently into Africa, the Indian region, the Madagascar region, and Southeast Asia; and Leucostegia originated from East Asia and/or Southeast Asia. [ABSTRACT FROM AUTHOR]
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- 2022
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31. Monocytes of allergics and non-allergics produce, store and release the neurotrophins NGF, BDNF and NT-3
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Rost, Bettina, Hanf, Gerald, Ohnemus, Ulrich, Otto-Knapp, Ralf, Groneberg, David A., Kunkel, Gert, and Noga, Oliver
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RESPIRATORY allergy , *NEURON development , *ENZYME-linked immunosorbent assay , *MESSENGER RNA , *CELL culture - Abstract
Abstract: Introduction: Recent studies have shown that neurotrophins (NTs) are involved in inflammatory processes. Elevated plasma levels of NTs were found allergic diseases with the highest levels in allergic asthma. However, the exact cellular sources involved in the regulation and release of neurotrophins in allergic inflammation are still not well defined. Objective: The aim of this study was to assess whether monocytes of allergic and non-allergic subjects produce, store and release the neurotrophins NGF, BDNF and NT-3. Methods: Monocytes of allergic and non-allergic donors were purified by immunomagnetic selection. APAAP-staining for the presence of NTs and their receptors was performed. RT-PCR and Western blot evaluated the production and storage of NTs. Monocytes were incubated and supernatants were collected for measurement of neurotrophic factors after stimulation with lipopolysaccharide (LPS) as inflammatory stimulus. The neurotrophin content in lysates and cell culture supernatants was determined by ELISA. Results: Human monocytes express the neurotrophins NGF, BDNF and NT-3 but also their specific receptors TrkA, TrkB and TrkC. RT-PCR amplification of isolated mRNA demonstrated expression of the examined neurotrophins. Proteins were detectable by Western blot. NTs were found in the monocyte lysates and supernatants at different levels in allergic and non-allergic donors. Cell stimulation with LPS leads to release of NGF and NT3. Conclusions: Monocytes, produce, store and release NGF, BDNF and NT-3. They are a possible source of elevated neurotrophin levels found in allergy and asthma. [Copyright &y& Elsevier]
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- 2005
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32. Phylogeny and classification of the tribe Lepisoreae (Polypodiaceae; pteridophyta) with the description of a new genus, Ellipinema gen. nov., segregated from Lepisorus.
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Zhang, Liang, Zhou, Xin-Mao, Liang, Zhen-Long, Fan, Xue-Ping, Thi Lu, Ngan, Song, Min-Shu, Knapp, Ralf, Gao, Xin-Fen, Sun, Hang, and Zhang, Li-Bing
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PHYLOGENY , *FERNS , *TRIBES , *NUCLEOTIDE sequence , *CLASSIFICATION - Abstract
• Complete or nearly complete sampling of non- Lepisorus genera is achieved. • All seven genera except Lepisorus in Lepisoreae are confirmed to be monophyletic. • Ellipinema is described as new to maintain the monophyly of Lepisorus. • Relationships of major clades are well resolved and strongly supported. • We propose an eight-genus classification based on the phylogeny, morphology, distribution. Lepisoroid ferns (tribe Lepisoreae, Polypodiaceae) are arguably one of the most confusing fern groups in Polypodiaceae in terms of delimitation of genera largely because of their simple morphology. Previous molecular studies either had very small taxon sampling of the non- Lepisorus genera and did not well resolve the relationships among these genera, or had a relatively large sampling at species level but the critical species were missing or their relationships were not well resolved. A recent study resolved the newly sampled Lepisorus jakonensis as sister to the remaining genera in Lepisoreae excluding Paragramma , and the authors lumped all the six well recognized genera into Lepisorus. In the present study, to infer a phylogeny we used DNA sequences of five plastid markers (matK, rbcL, rbcL-atpB , rps4 & rps4-trnS, trnL & trnL-F) of 172 accessions representing ca. 44 species of non- Lepisorus genera and 54 accessions representing ca. 50 species of Lepisorus as ingroup, and 10 non-Lepisoreae accessions from the most closely related four genera (Leptochilus , Microsorum , Phymatosorus , and Goniophlebium) in Microsoroideae and one genus (Pyrrosia) in Platycerioideae. Our major results include: (1) All seven currently defined genera except Lepisorus in Lepisoreae are confirmed to be monophyletic; (2) The Lepisorus jakonensis clade is confirmed to be the second earliest diverged lineage in Lepisoreae; (3) Neolepisorus is resolved as sister to the rest in a clade containing all non- Lepisorus genera except Paragramma ; (4) Lemmaphyllum is sister to a clade containing Lepidomicrosorium , Neocheiropteris , and Tricholepidium ; and (5) Ellipinema gen. nov. is segregated from Lepisorus based on the phylogeny and morphology in order to stabilize the current usage of the existing six non- Lepisorus genera and species names in these genera. A key to all eight genera of Lepisoreae is provided. [ABSTRACT FROM AUTHOR]
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- 2020
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