26 results on '"Liotti, Flora Marzia"'
Search Results
2. SARS-CoV-2 viral load and replication in postmortem examinations
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Grassi, Simone, Arena, Vincenzo, Cattani, Paola, Dell’Aquila, Marco, Liotti, Flora Marzia, Sanguinetti, Maurizio, and Oliva, Antonio
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- 2022
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3. Evaluation of three commercial assays for SARS-CoV-2 molecular detection in upper respiratory tract samples
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Liotti, Flora Marzia, Menchinelli, Giulia, Marchetti, Simona, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Posteraro, Brunella, and Cattani, Paola
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- 2021
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4. Implementation of the eazyplex® CSF direct panel assay for rapid laboratory diagnosis of bacterial meningitis: 32-month experience at a tertiary care university hospital
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D’Inzeo, Tiziana, Menchinelli, Giulia, De Angelis, Giulia, Fiori, Barbara, Liotti, Flora Marzia, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Posteraro, Brunella, and Spanu, Teresa
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- 2020
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5. A 67-Year-Old Man with Chronic Lymphocytic Leukemia (CLL) on Maintenance Therapy with Ibrutinib with Persistent SARS-CoV-2 Infection Unresponsive to Antiviral Treatments.
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Sanmartin, Flavia, Magrini, Eugenia, Rando, Emanuele, Del Giacomo, Paola, Dusina, Alex, Matteini, Elena, Carbone, Andrea, Puma, Giuseppe, Leanza, Gabriele Maria, Frondizi, Federico, Innocenti, Idanna, Maiuro, Giuseppe, Liotti, Flora Marzia, Santangelo, Rosaria, Laurenti, Luca, and Cingolani, Antonella
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CHRONIC lymphocytic leukemia ,SARS-CoV-2 ,BLOOD diseases ,THERAPEUTICS ,COMMON variable immunodeficiency - Abstract
Objective: Unusual clinical course. Background: SARS-CoV-2 infection can persist in immunocompromised patients with hematological malignancies, despite antiviral treatment. This report is of a 67-year-old man with chronic lymphocytic leukemia (CLL), secondary hypogammaglobulinemia, and thrombocytopenia on maintenance therapy with ibrutinib, with persistent SARSCoV- 2 infection unresponsive to antiviral treatment, including remdesivir, nirmatrelvir/ritonavir (Paxlovid), and tixagevimab/cilgavimab (Evusheld). Case Report: The patient was admitted to our hospital 3 times. During his first hospitalization, he was treated with 5-day course of remdesivir and intravenous steroids; however, antigen and molecular nasopharyngeal swabs were persistently positive, and he was discharged home. Due to respiratory worsening, he was rehospitalized, and despite being treated initially with tixagevimab/cilgavimab, and subsequently with a remdesivir course of 5 days, SARS-CoV-2 tests remained persistently positive. During his third hospital stay, our patient was subjected to combined therapy with remdesivir and nirmatrelvir/ritonavir for 5 days, obtaining a significant reduction of viral load at both antigen and molecular testing. As an ultimate attempt to achieve a negative status before discharge, a 10-day course of combined remdesivir and nirmatrelvir/ritonavir was administered, with a temporary reduction of viral load, followed by a sudden increase immediately after the discontinuation of Paxlovid. Due to worsening hematological disease and bacterial over-infections, the patient gradually worsened until death. Conclusions: This is an emblematic case of correlation between persistent SARS-CoV-2 infection and immunosuppression status in hematological hosts. In these patients, the viral load remains high, favoring the evolution of the virus, and the immunodeficiency makes it difficult to identify the appropriate therapeutic approach. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Incidence and antimicrobial resistance trends in bloodstream infections caused by ESKAPE and Escherichia coli at a large teaching hospital in Rome, a 9-year analysis (2007–2015)
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De Angelis, Giulia, Fiori, Barbara, Menchinelli, Giulia, D’Inzeo, Tiziana, Liotti, Flora Marzia, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Posteraro, Brunella, and Spanu, Teresa
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- 2018
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7. Chip-Based Molecular Evaluation of a DNA Extraction Protocol for Candida Species from Positive Blood Cultures.
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Ivagnes, Vittorio, Menchinelli, Giulia, Liotti, Flora Marzia, De Carolis, Elena, Torelli, Riccardo, De Lorenzis, Desy, Recine, Cinzia, Sanguinetti, Maurizio, D'Inzeo, Tiziana, and Posteraro, Brunella
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CANDIDA ,CANDIDIASIS ,SPECIES ,BLOOD testing ,ECHINOCANDINS - Abstract
The diagnosis of Candida bloodstream infection (BSI) may rely on a PCR-based analysis of a positive blood culture (PBC) obtained from the patient at the time of BSI. In this study, a yeast DNA extraction protocol for use on PBCs was developed and evaluated with the molecular mouse (MM) yeast blood (YBL) chip-based PCR assay, which allowed us to detect nine medically relevant Candida species. We studied 125 simulated or clinical PBCs for Candida species. A positive correlation between the DNA concentration and colony-forming unit count was found for simulated (Spearman's ρ = 0.58; p < 0.0001) and clinical (Spearman's ρ = 0.23, p = 0.09) PBCs. The extracted DNA yielded positive results with the MM YBL chip assay that agreed with the Candida species-level identification results for 63 (100%) of 63 isolates from simulated PBCs and 66 (99.5%) of 67 isolates from clinical PBCs. The false-negative result was for one C. tropicalis isolate that grew together with C. albicans in PBC. None of the 30 (Candida)-negative clinical BCs included as negative controls yielded a positive result with the MM YBL chip assay. Our DNA extraction protocol for the Candida species couples efficiency and simplicity together. Nevertheless, further studies are needed before it can be adopted for use with the MM YBL chip assay. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Performance of a Novel Real-Time PCR-Based Assay for Rapid Monkeypox Virus Detection in Human Samples.
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Liotti, Flora Marzia, Marchetti, Simona, Falletta, Federico, D'Onghia, Sara, Sanguinetti, Maurizio, Santangelo, Rosaria, and Posteraro, Brunella
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MONKEYPOX ,CLINICAL pathology ,BLOOD sampling ,HUMAN beings ,EPIDEMICS - Abstract
The ongoing epidemic of mpox, namely human monkeypox virus (MPXV) infection, requires rapid and reliable laboratory diagnosis. We report on the QIAstat-Dx viral vesicular panel PCR assay that allows the detection of (within 75 min) six vesicular disease-causing viruses, including MPXV. We analyzed 168 clinical samples, known to be positive (51 samples) or negative (117 samples) for MPXV clade II, obtained from patients at their mpox diagnosis or follow-up. QIAstat assay results were compared to those of a MPXV-specific reference PCR assay. The QIAstat assay detected MPXV (clade II) in 51 (100%) of 51 samples and did not detect MPXV in 117 (100%) of 117 samples, resulting in a positive or negative agreement of 100% (95% CI, 93.0–100) and 100% (95% CI, 96.8–100), respectively. Of the 20 patients diagnosed with mpox, 18 (90.0%) had at least a vesicular swab and 1 (5.0%) had only an oropharyngeal swab positive for MPXV. At mpox follow-ups, 2 (10.0%) of 20 patients had first-time positive whole blood samples. Thirteen MPXV-negative samples were positive for mpox-mimicking viruses. Our findings show the excellent performance of the QIAstat-Dx assay for MPXV detection in clinical samples. Further studies are needed before considering a large-scale application of the QIAstat-Dx assay. [ABSTRACT FROM AUTHOR]
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- 2023
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9. Susceptibility of Meropenem-Resistant and/or Carbapenemase-Producing Clinical Isolates of Enterobacterales (Enterobacteriaceae) and Pseudomonas aeruginosa to Ceftazidime-Avibactam and Ceftolozane-Tazobactam as Assessed by In Vitro Testing Methods.
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Cortazzo, Venere, Posteraro, Brunella, Menchinelli, Giulia, Liotti, Flora Marzia, D'Inzeo, Tiziana, Fiori, Barbara, Luzzaro, Francesco, Sanguinetti, Maurizio, and Spanu, Teresa
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PSEUDOMONAS aeruginosa ,ENTEROBACTERIACEAE ,TEST methods ,GRAM-negative bacteria - Abstract
This study aimed to assess the comparability of in vitro susceptibility testing methods to ceftazidime-avibactam (CZA) and ceftolozane-tazobactam (C/T). Meropenem-resistant and/or carbapenemase-producing clinical isolates of Enterobacterales (Enterobacteriaceae) and Pseudomonas aeruginosa were tested by both bioMérieux ETEST and VITEK-2 AST-N397 card and compared with a Micronaut AST-system broth microdilution (BMD) method. CZA and C/T MICs were interpreted using EUCAST breakpoints. Of the 153 Enterobacteriaceae isolates, 55.6% and 0.0% (VITEK 2) and 56.9% and 0.0% (ETEST and BMD) were susceptible to CZA and C/T, respectively. Of 52 P. aeruginosa isolates, 50.0% and 40.4% (VITEK 2, ETEST, and BMD) were susceptible to CZA and C/T, respectively. The essential agreement (EA) was 96.1% (197/205; VITEK 2 versus BMD) and 95.6% (196/205; ETEST versus BMD) for CZA testing, whereas EA was 98.0% (201/205; VITEK 2 versus BMD) and 96.6% (198/205; ETEST versus BMD) for C/T testing. The categorical agreement (CA) was 98.0% (201/205; VITEK 2 versus BMD) and 100% (ETEST versus BMD) for CZA testing, whereas CA was 100% (VITEK 2 versus BMD) and 100% (ETEST versus BMD) for C/T testing. Categorical errors regarded four Enterobacteriaceae isolates. VITEK 2 and ETEST yielded equivalent CZA and C/T susceptibility testing results, compared to the BMD method, in such a clinical context. [ABSTRACT FROM AUTHOR]
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- 2022
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10. SARS-CoV-2 Antigen Test Results to Infer Active or Non-Active Virus Replication Status in COVID-19 Patients.
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De Angelis, Giulia, Menchinelli, Giulia, Liotti, Flora Marzia, Marchetti, Simona, Salustri, Alessandro, Vella, Antonietta, Santangelo, Rosaria, Posteraro, Brunella, and Sanguinetti, Maurizio
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COVID-19 ,CORONAVIRUS diseases ,ANTIGEN analysis ,VIRAL replication ,COVID-19 testing - Abstract
We used nasopharyngeal swab samples of patients with a symptomatic (n = 82) or asymptomatic (n = 20) coronavirus disease 2019 (COVID-19) diagnosis to assess the ability of antigen detection tests to infer active (potentially transmissible) or inactive (potentially non-transmissible) infection by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Using the subgenomic RNA (sgRNA) as an active replication marker of SARS-CoV-2, 48 (76.2%), 56 (88.9%), and 63 (100%) of 63 samples with sgRNA positive results tested positive with the SD BIOSENSOR STANDARD Q COVID-19 Ag (Standard Q), the SD BIOSENSOR STANDARD F COVID-19 Ag FIA (Standard F), or the Fujirebio LUMIPULSE G SARS-CoV-2 Ag (Lumipulse) assay, respectively. Conversely, 37 (94.9%), 29 (74.4%), and 7 (17.9%) of 39 samples with sgRNA negative results tested negative with Standard Q, Standard F, or Lumipulse, respectively. Stratifying results by the number of days of symptoms before testing revealed that most antigen positive/sgRNA positive results were among samples tested at 2–7 days regardless of the assay used. Conversely, most antigen negative/sgRNA negative results were among samples tested at 16–30 days only when Standard Q or Standard F were used. In conclusion, based on our findings, a negative antigen test, especially with the Lumipulse assay, or a positive antigen test, especially with the Standard F assay, may suggest, respectively, the absence or presence of replication-competent SARS-CoV-2. [ABSTRACT FROM AUTHOR]
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- 2022
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11. A New PCR-Based Assay for Testing Bronchoalveolar Lavage Fluid Samples from Patients with Suspected Pneumocystis jirovecii Pneumonia.
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Liotti, Flora Marzia, Posteraro, Brunella, De Angelis, Giulia, Torelli, Riccardo, De Carolis, Elena, Speziale, Domenico, Menchinelli, Giulia, Spanu, Teresa, and Sanguinetti, Maurizio
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POLYMERASE chain reaction , *BRONCHOALVEOLAR lavage , *PNEUMOCYSTIS pneumonia , *IMMUNOFLUORESCENCE , *MYCOSES - Abstract
To support the clinical laboratory diagnosis of Pneumocystis jirovecii (PJ) pneumonia (PCP), an invasive fungal infection mainly occurring in HIV-negative patients, in-house or commercial PJ-specific real-time quantitative PCR (qPCR) assays are todays’ reliable options. The performance of these assays depends on the type of PJ gene (multi-copy mitochondrial versus single-copy nuclear) targeted by the assay. We described the development of a PJ-PCR assay targeting the dihydrofolate reductase (DHFR)-encoding gene. After delineating its analytical performance, the PJ-PCR assay was used to test bronchoalveolar lavage (BAL) fluid samples from 200 patients (only seven were HIV positive) with suspected PCP. Of 211 BAL fluid samples, 18 (8.5%) were positive and 193 (91.5%) were negative by PJ-PCR. Of 18 PJ-PCR-positive samples, 11 (61.1%) tested positive and seven (38.9%) tested negative with the immunofluorescence assay (IFA). All (100%) of the 193 PJ-PCR-negative samples were IFA negative. Based on IFA/PCR results, patients were, respectively, classified as having (n = 18) and not having (n = 182) proven (PJ-PCR+/IFA+) or probable (PJ-PCR+/IFA−) PCP. For 182 patients without PCP, alternative infectious or non-infectious etiologies were identified. Our PJ-PCR assay was at least equivalent to IFA, fostering studies aimed at defining a qPCR-based standard for PCP diagnosis in the future. [ABSTRACT FROM AUTHOR]
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- 2021
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12. Lumipulse G SARS-CoV-2 Ag assay evaluation using clinical samples from different testing groups.
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Menchinelli, Giulia, Bordi, Licia, Liotti, Flora Marzia, Palucci, Ivana, Capobianchi, Maria Rosaria, Sberna, Giuseppe, Lalle, Eleonora, Romano, Lucio, De Angelis, Giulia, Marchetti, Simona, Sanguinetti, Maurizio, Cattani, Paola, and Posteraro, Brunella
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SARS-CoV-2 ,COVID-19 ,OCHRATOXINS ,DETECTION limit ,RNA ,ANTIGENS - Abstract
Compared to RT-PCR, lower performance of antigen detection assays, including the Lumipulse G SARS-CoV-2 Ag assay, may depend on specific testing scenarios. We tested 594 nasopharyngeal swab samples from individuals with COVID-19 (RT-PCR cycle threshold [Ct] values ≤ 40) or non-COVID-19 (Ct values >40) diagnoses. RT-PCR positive samples were assigned to diagnostic, screening, or monitoring groups of testing. With a limit of detection of 1.2 × 10
4 SARS-CoV-2 RNA copies/mL, Lumipulse showed positive percent agreement (PPA) of 79.9% (155/194) and negative percent agreement of 99.3% (397/400), whereas PPAs were 100% for samples with Ct values of <18 or 18–<25 and 92.5% for samples with Ct values of 25–<30. By three groups, Lumipulse showed PPA of 87.0% (60/69), 81.1% (43/53), or 72.2% (52/72), respectively, whereas PPA was 100% for samples with Ct values of <18 or 18–<25, and was 94.4, 80.0, or 100% for samples with Ct values of 25–<30, respectively. Additional testing of RT-PCR positive samples for SARS-CoV-2 subgenomic RNA showed that, by three groups, PPA was 63.8% (44/69), 62.3% (33/53), or 33.3% (24/72), respectively. PPAs dropped to 55.6, 20.0, or 41.7% for samples with Ct values of 25–<30, respectively. All 101 samples with a subgenomic RNA positive result had a Lumipulse assay's antigen positive result, whereas only 54 (58.1%) of remaining 93 samples had a Lumipulse assay's antigen positive result. Lumipulse assay was highly sensitive in samples with low RT-PCR Ct values, implying repeated testing to reduce consequences of false-negative results. [ABSTRACT FROM AUTHOR]- Published
- 2021
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13. Simulated Pediatric Blood Cultures to Assess the Inactivation of Clinically Relevant Antimicrobial Drug Concentrations in Resin-Containing Bottles.
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Giordano, Liliana, Liotti, Flora Marzia, Menchinelli, Giulia, De Angelis, Giulia, D'Inzeo, Tiziana, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Spanu, Teresa, and Posteraro, Brunella
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OXACILLIN ,ANTI-infective agents ,STREPTOCOCCUS agalactiae ,METHICILLIN-resistant staphylococcus aureus ,STREPTOCOCCUS pneumoniae ,CHILD patients ,BLOOD collection - Abstract
The bacteremia level as well as the administration of antibiotics before blood collection may significantly affect the recovery of bacterial pathogens from pediatric blood cultures in BacT/Alert Virtuo or Bactec FX BC systems, which remain the common techniques to diagnose bacteremia in pediatric patients. We simulated pediatric blood cultures with low or intermediate bacteremia level to evaluate BacT/Alert PF Plus and Bactec Peds Plus blood culture bottles for resin-based inactivation of 16 antibiotic–bacterium combinations. Overall, 105/192 (54.7%) of BacT/Alert PF Plus bottles and 69/192 (36.0%) of Bactec Peds Plus bottles allowed organisms to grow when exposed to antibiotics. In particular, both BacT/Alert PF Plus and Bactec Peds Plus bottles proved to be effective with piperacillin/tazobactam and Pseudomonas aeruginosa or with oxacillin and methicillin-susceptible Staphylococcus aureus (100% growth), whereas no effectiveness was apparent with ceftriaxone and Escherichia coli , Streptococcus agalactiae , or Streptococcus pneumoniae or with cefepime and E. coli (0% growth). In some relevant instances (e.g. , with vancomycin and methicillin-resistant S. aureus or Streptococcus pneumoniae), BacT/Alert PF Plus bottles were superior to Bactec Peds Plus bottles. Together, these findings underscore the potentiality of resin-containing bottles to enhance diagnosis of bacteremia in pediatric patients on antimicrobial therapy. This is particularly true with one of the evaluated BC systems and with simulated intermediate bacteremia level only. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Bordetella pertussis DNA detected in a tracheostomized child blood before seroconversion.
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Liotti, Flora Marzia, De Angelis, Giulia, Speziale, Domenico, Morandotti, Grazia Angela, Genovese, Orazio, Sanguinetti, Maurizio, and Posteraro, Brunella
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BORDETELLA pertussis , *AZITHROMYCIN , *COUGH , *SEROCONVERSION , *BLOOD - Abstract
Despite a widespread pertussis immunization in childhood, the I Bordetella pertussis i infection (BPI) - including pertussis (i.e. whooping cough) - has risen in many world regions [[1]], and factors contributing to resurgence (or emergence) of BPI include improved diagnostics [[2]]. This environment may hamper the thriving of I B. pertussis i in the upper respiratory tract [[3]], which is yet the preferred colonization site of I B. pertussis i and other I Bordetella i species, such as I Bordetella parapertussis i , I Bordetella bronchiseptica i and I Bordetella holmesii i . Thereafter, Bordet-Gengou agar cultures will be negative for I B. pertussis i , whereas the PCR assay - which works on multiple matrices - and, additionally, the BioFire® FilmArray® Respiratory Panel test - which detects three bacterial respiratory tract pathogens, including I B. pertussis i - yielded negative results for I B. pertussis i . [Extracted from the article]
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- 2021
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15. Implementation of the eazyplex® CSF direct panel assay for rapid laboratory diagnosis of bacterial meningitis: 32-month experience at a tertiary care university hospital.
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D'Inzeo, Tiziana, Menchinelli, Giulia, De Angelis, Giulia, Fiori, Barbara, Liotti, Flora Marzia, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Posteraro, Brunella, and Spanu, Teresa
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BACTERIAL meningitis ,CLINICAL pathology ,STREPTOCOCCUS pneumoniae ,UNIVERSITY hospitals ,TERTIARY care ,GRAM'S stain ,STREPTOCOCCUS agalactiae - Abstract
We aimed to report a 32-month laboratory experience with the eazyplex
® CSF direct panel assay for the rapid diagnosis of meningitis due to six most common bacterial species (Escherichia coli, Haemophilus influenzae, Listeria monocytogenes, Neisseria meningitidis, Streptococcus agalactiae, and Streptococcus pneumoniae). We included all cerebrospinal fluid (CSF) samples from patients admitted with a clinical suspicion of meningitis/encephalitis between May 2016 and December 2018 at our hospital. In addition to the eazyplex® assay, both Gram stain microscopy and culture were performed, and results were confirmed with 16S rRNA PCR/sequencing. Patients' demographics and relevant clinical information were collected. Of 135 studied patients, 44 (32.6%) had a microbiologically documented diagnosis of meningitis. Overall, we identified 21 S. pneumoniae, 10 N. meningitidis, 6 L. monocytogenes, 3 E. coli, 2 Streptococcus pyogenes, 1 S. agalactiae, and 1 Citrobacter koseri as aetiological agents. The eazyplex® assay allowed identification in 40 (90.9%) cases, with four not identified cases due to microorganisms not included in the panel at the time of testing. Thirty-two (72.7%) cases had positive culture results, whereas 28 (63.6%) cases had positive Gram stain results. Notably, combining Gram stain and eazyplex® assay allowed identification in 100% of cases. After notification of rapid results, physicians modified the empiric antibiotic therapy, which became appropriate in three patients (all with L. monocytogenes meningitis). The eazyplex® CSF panel assay worked better than culture in detecting the most common agents of bacterial meningitis and accelerated the diagnosis leading to timely initiation or continuation of appropriate antibiotic therapy. [ABSTRACT FROM AUTHOR]- Published
- 2020
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16. Development of a Multiplex PCR Platform for the Rapid Detection of Bacteria, Antibiotic Resistance, and Candida in Human Blood Samples.
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Liotti, Flora Marzia, Posteraro, Brunella, Mannu, Franca, Carta, Franco, Pantaleo, Antonella, De Angelis, Giulia, Menchinelli, Giulia, Spanu, Teresa, Fiori, Pier Luigi, Turrini, Francesco, and Sanguinetti, Maurizio
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DRUG resistance in bacteria ,BLOOD sampling ,TURNAROUND time ,BACTERIA ,DETECTION limit ,CANDIDA ,FOOD fermentation - Abstract
The diagnosis of bloodstream infections (BSIs) still relies on blood culture (BC), but low turnaround times may hinder the early initiation of an appropriate antimicrobial therapy, thus increasing the risk of infection-related death. We describe a direct and rapid multiplex PCR-based assay capable of detecting and identifying 16 bacterial and four Candida species, as well as three antibiotic-resistance determinants, in uncultured samples. Using whole-blood samples spiked with microorganisms at low densities, we found that the MicrobScan assay had a mean limit of detection of 15.1 ± 3.3 CFU of bacteria/ Candida per ml of blood. When applied to positive BC samples, the assay allowed the sensitive and specific detection of BSI pathogens, including bla
KPC -, mecA -, or vanA / vanB -positive bacteria. We evaluated the assay using prospectively collected blood samples from patients with suspected BSI. The sensitivity and specificity were 86.4 and 97.0%, respectively, among patients with positive BCs for the microorganisms targeted by the assay or patients fulfilling the criteria for infection. The mean times to positive or negative assay results were 5.3 ± 0.2 and 5.1 ± 0.1 h, respectively. Fifteen of 20 patients with MicrobScan assay-positive/BC-negative samples were receiving antimicrobial therapy. In conclusion, the MicrobScan assay is well suited to complement current diagnostic methods for BSIs. [ABSTRACT FROM AUTHOR]- Published
- 2019
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17. Direct use of eazyplex® SuperBug CRE assay from positive blood cultures in conjunction with inpatient infectious disease consulting for timely appropriate antimicrobial therapy in Escherichia coli and Klebsiella pneumoniae bloodstream infections
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Fiori, Barbara, D'Inzeo, Tiziana, Posteraro, Brunella, Menchinelli, Giulia, Liotti, Flora Marzia, Angelis, Giulia De, Maio, Flavio De, Fantoni, Massimo, Murri, Rita, Scoppettuolo, Giancarlo, Ventura, Giulio, Tumbarello, Mario, Pennestrì, Francesco, Taccari, Francesco, Sanguinetti, Maurizio, and Spanu, Teresa
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KLEBSIELLA pneumoniae ,COMMUNICABLE diseases ,ESCHERICHIA coli ,BLOOD ,CANDIDEMIA - Published
- 2019
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18. In vitro Evaluation of BACT/ALERT® VIRTUO®, BACT/ALERT 3D®, and BACTEC™ FX Automated Blood Culture Systems for Detection of Microbial Pathogens Using Simulated Human Blood Samples.
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Menchinelli, Giulia, Liotti, Flora Marzia, Fiori, Barbara, De Angelis, Giulia, D'Inzeo, Tiziana, Giordano, Liliana, Posteraro, Brunella, Sabatucci, Michela, Sanguinetti, Maurizio, and Spanu, Teresa
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DIAGNOSIS of blood diseases ,BLOOD diseases ,BACTERIAL diseases ,MYCOSES ,SEPSIS ,SEPTIC shock ,BLOOD testing - Abstract
Blood culture (BC) is still the standard for diagnosing bloodstream infections (BSIs), especially those caused by bacteria and fungi. Infection-complicating sepsis or septic shock often occurs at BSI onset, making necessary to improve the diagnostic yield of positive BCs. Among the BC systems currently available, the BACT/ALERT® VIRTUO® (VIRTUO) system has been developed to shorten time to detection (TTD) of positive BCs. In this study, we assessed TTD for 330 clinically relevant species including 14 Gram-positive, 14 Gram-negative, and 5 yeast isolates in spiked human blood samples that were tested in parallel with VIRTUO BACT/ALERT® 3D (BTA3D) and BACTEC™ FX (BACTEC) systems. We inoculated 30 colony-forming unit (CFU) from each microbial suspension into BACT/ALERT® Plus or BACTEC™ Plus (aerobic/anaerobic or pediatric) BC bottles, and we used two different blood volumes to simulate, respectively, the BCs collected from adult and pediatric patients. Of 2,610 bottles tested, 2,600 (99.6%) signaled positive in the three systems. Only the BACTEC system did not detect Staphylococcus lugdunensis isolates in anaerobic bottles. Among adult simulated cultures, the median TTD was significantly shorter for aerobic/anaerobic bottles incubated in VIRTUO (11.6 h and 10.1 h) compared to bottles incubated in either BTA3D (13.3 and 12.3 h) or BACTEC (13.5 and 12.2 h) system. Among pediatric simulated cultures, the median TTD was significantly shorter for bottles incubated in VIRTUO (11.2 h) compared to bottles incubated in either the BTA3D (13.0 h) or BACTEC (12.5 h) system. Compared to BTA3D and/or BACTEC systems, VIRTUO allowed faster growth detection for most of the 33 microbial species tested. Notable examples were Salmonella spp. (7.4 h by VIRTUO vs. 10.1 h and 9.2 h by either BTA3D or BACTEC) and Streptococcus agalactiae (8.1 h by VIRTUO vs. 10.3 and 9.4 h by either BTA3D or BACTEC). The few notable exceptions included Stenotrophomonas maltophilia and some Candida species. Together, these findings confirm that VIRTUO has greater potential of improving the laboratory detection of bacteremia and fungemia than the progenitor BTA3D or the competitor BACTEC system. [ABSTRACT FROM AUTHOR]
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- 2019
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19. Antimicrobial susceptibility testing of pathogens isolated from blood culture: a performance comparison of Accelerate Pheno™ and VITEK® 2 systems with the broth microdilution method.
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De Angelis, Giulia, Posteraro, Brunella, Menchinelli, Giulia, Liotti, Flora Marzia, Spanu, Teresa, and Sanguinetti, Maurizio
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Objectives: To compare the performance of the Accelerate Pheno™ system with that of the conventional phenotypic VITEK® 2 system for rapid antimicrobial susceptibility testing (AST) of bacterial pathogens from positive blood culture (PBC) samples, based on the reference broth microdilution (BMD) method.Methods: Prospectively collected PBCs that represented patient-unique bloodstream infection episodes were included. For PBC samples showing monomicrobial growth (n = 86), AST was performed using both Accelerate Pheno™ and VITEK® 2 systems directly from PBC broth. Colony isolates derived from subculture of PBC broth were then used for BMD testing. AST results were interpreted according to 2017 EUCAST breakpoints.Results: The overall categorical agreement between Accelerate Pheno™ system and BMD was 92.7% (467/504) for Gram-negative organisms and 99.0% (95/96) for Gram-positive organisms, with rates for very major errors of 3.6% (6/166), major errors 2.2% (9/416) and minor errors 3.8% (23/600). The overall categorical agreement between the VITEK® 2 system and BMD was 91.7% (463/505) for Gram-negative organisms and 99.0% (97/98) for Gram-positive organisms, with rates of very major errors of 2.4% (4/169), major errors 1.0% (4/416) and minor errors 5.8% (35/603). Importantly, unlike the VITEK® 2 system, no false-susceptible results occurred with two colistin-resistant organism-growing PBCs tested using the Accelerate Pheno™ system.Conclusions: Based on these findings, the Accelerate Pheno™ system can be a valid alternative for the rapid AST of Gram-negative and Gram-positive bacteria in bloodstream infections. [ABSTRACT FROM AUTHOR]- Published
- 2019
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20. First case of bacteremic liver abscess caused by an ST260-related (ST1861), hypervirulent Klebsiella pneumoniae.
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Arena, Fabio, Spanu, Teresa, De Angelis, Lucia Henrici, Liotti, Flora Marzia, D'Andrea, Marco Maria, Menchinelli, Giulia, De Maio, Flavio, Rossolini, Gian Maria, Henrici De Angelis, Lucia, and D'Andrea, Marco Maria
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- 2016
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21. EVALUATION OF A MULTIPLEX PCR ASSAY FOR THE RAPID DETECTION OF CYTOKINE GENE EXPRESSION IN HUMAN BLOOD SAMPLES.
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Liotti, Flora Marzia, Posteraro, Brunella, Carmen Pereyra Boza, Maria del, Pascale, Gennaro De, Tanzarella, Eloisa Sofia, Gherardi, Giovanni, Veralli, Roberta, Sanguinetti, Maurizio, and Turrini, Francesco Michelangelo
- Subjects
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GENE expression , *BLOOD sampling , *HUMAN genes , *CYTOKINES , *POLYMERASE chain reaction , *THEILERIA - Published
- 2023
22. Performance of a novel diagnostic assay for rapid SARS-CoV-2 antigen detection in nasopharynx samples.
- Author
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Liotti, Flora Marzia, Menchinelli, Giulia, Lalle, Eleonora, Palucci, Ivana, Marchetti, Simona, Colavita, Francesca, La Sorda, Marilena, Sberna, Giuseppe, Bordi, Licia, Sanguinetti, Maurizio, Cattani, Paola, Capobianchi, Maria Rosaria, and Posteraro, Brunella
- Subjects
- *
SARS-CoV-2 , *NASOPHARYNX - Abstract
This would be consistent with the viral load kinetics within the first days of SARS-CoV-2 infection, showing that nasopharynx swab samples obtained on day 7 may be persistently positive (Ct values, 23-24) for SARS-CoV-2 [[5]]. To the Editor, Among the laboratory testing methods developed for identifying patients with acute infection due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) - the aetiological agent of coronavirus disease 2019 (COVID-19) - viral RNA amplification using real-time PCR (RT-PCR) is to date the standard method in many clinical virology laboratories [[1]]. According to RT-PCR Ct values, the sample per cent positivity of the STANDARD F COVID-19 Ag FIA ranged from 100.0% (5/5; Ct, <18), 93.8% (15/16; Ct, >=18-<25), 42.0% (23/55; Ct, >=25-<35) to 21.0% (6/28; Ct, >=35). [Extracted from the article]
- Published
- 2021
- Full Text
- View/download PDF
23. Evaluating the newly developed BioFire COVID-19 test for SARS-CoV-2 molecular detection.
- Author
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Liotti, Flora Marzia, Menchinelli, Giulia, Marchetti, Simona, Morandotti, Grazia Angela, Sanguinetti, Maurizio, Posteraro, Brunella, and Cattani, Paola
- Subjects
- *
COVID-19 testing , *SARS-CoV-2 , *COVID-19 - Abstract
It was not until 24 March 2020 that the newly developed BioFire coronavirus disease 2019 (COVID-19) test (BioFire Defense, Salt Lake City, UT, USA) for PCR-based detection of RNA from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in clinical samples received a US Food and Drug Administration emergency-use authorization (https://www.fda.gov/media/136356/download). Consequently, compared to molecular tests such as the Quanty COVID-19 assay, the analytical sensitivity shown by BioFire COVID-19 test would result in a slight reduction in its clinical sensitivity in COVID-19 diagnosis. [Extracted from the article]
- Published
- 2020
- Full Text
- View/download PDF
24. SARS-CoV-2 Antigen Detection to Expand Testing Capacity for COVID-19: Results from a Hospital Emergency Department Testing Site.
- Author
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Menchinelli, Giulia, De Angelis, Giulia, Cacaci, Margherita, Liotti, Flora Marzia, Candelli, Marcello, Palucci, Ivana, Santangelo, Rosaria, Sanguinetti, Maurizio, Vetrugno, Giuseppe, Franceschi, Francesco, and Posteraro, Brunella
- Subjects
SARS-CoV-2 ,COVID-19 testing ,HOSPITAL emergency services ,ANTIGENS ,COVID-19 - Abstract
Background: SARS-CoV-2 antigen detection has currently expanded the testing capacity for COVID-19, which yet relies on the SARS-CoV-2 RNA RT-PCR amplification. Objectives: To report on a COVID-19 testing algorithm from a tertiary care hospital emergency department (ED) that combines both antigen (performed on the ED) and RT-PCR (performed outside the ED) testing. Methods: Between December 2020 and January 2021, in a priori designated, spatially separated COVID-19 or non-COVID-19 ED areas, respectively, symptomatic or asymptomatic patients received SARS-CoV-2 antigen testing on nasopharyngeal swab samples. Antigen results were promptly accessible to guide subsequent, outside performed confirmatory (RT-PCR) testing. Results: Overall, 1083 (100%) of 1083 samples in the COVID-19 area and 1815 (49.4%) of 3670 samples in the non-COVID-19 area had antigen results that required confirmation by RT-PCR. Antigen positivity rates were 12.4% (134/1083) and 3.7% (66/1815), respectively. Compared to RT-PCR testing results, sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of antigen testing were, respectively, 68.0%, 98.3%, 88.8%, and 94.1% in the COVID-19 area, and 41.9%, 97.3%, 27.3%, and 98.6% in non-COVID-19 area. Practically, RT-PCR tests were avoided in 50.6% (1855/3670) of non-COVID-19 area samples (all antigen negative) from patients who, otherwise, would have needed antigen result confirmation. Conclusions: Our algorithm had value to preserve RT-PCR from avoidable usage and, importantly, to save time, which translated into a timely RT-PCR result availability in the COVID-19 area. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
25. Multicenter evaluation of the RAPIDEC® CARBA NP test for rapid screening of carbapenemase-producing Enterobacteriaceae and Gram-negative nonfermenters from clinical specimens.
- Author
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Coppi, Marco, Antonelli, Alberto, Giani, Tommaso, Spanu, Teresa, Liotti, Flora Marzia, Fontana, Carla, Mirandola, Walter, Gargiulo, Raffaele, Barozzi, Agostino, Mauri, Carola, Principe, Luigi, and Rossolini, Gian Maria
- Subjects
- *
CARBAPENEMASE , *ENTEROBACTERIACEAE , *GRAM-negative aerobic bacteria , *HOSPITAL care , *WORKFLOW - Abstract
The rapid diagnosis of carbapenemase-producing (CP) bacteria is essential for the management of therapy and infection control. In this study, RAPIDEC® CARBA NP (RCNP) was evaluated for the rapid screening of CP Enterobacteriaceae, Acinetobacter baumannii complex, and Pseudomonas aeruginosa from clinical specimens collected at five Italian hospitals. Firstly, each site tested 20 well-characterized strains in a blinded fashion. Secondly, each center prospectively tested 25 isolates from blood cultures processed with a rapid workflow (6 h after subculture) and 25 isolates from other specimens processed after an overnight culture. The presence of carbapenemases was confirmed by multiplex real-timePCRs targeting carbapenemase genes. RCNP presented an overall sensitivity, specificity, positive predictive value, and negative predictive value of 70%, 94%, 82%, and 89%, respectively, with a higher performance in detection of CP Enterobacteriaceae and a poorer performance in detection of CP A. baumannii complex. With isolates from blood cultures, RCNP could significantly reduce the time required for identification of CP Enterobacteriaceae (less than 9 h since the positivization of blood cultures). [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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26. Comparison of Mycoplasma IES, Mycofast Revolution and Mycoplasma IST2 to detect genital mycoplasmas in clinical samples.
- Author
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D'Inzeo, Tiziana, De Angelis, Giulia, Fiori, Barbara, Menchinelli, Giulia, Liotti, Flora Marzia, Morandotti, Grazia Angela, De Maio, Flavio, Nagel, Domenico, Antonaci, Marco, Sanguinetti, Maurizio, and Spanu, Teresa
- Subjects
- *
MYCOPLASMA , *MYCOPLASMATACEAE , *MYCOPLASMA bovis , *AGAR plates , *MICROBIAL cultures - Abstract
Introduction: Culture is regarded as the gold standard for the detection of genital mycoplasma in clinical samples. Commercially available diagnostic kits, based on liquid broth cultures, provide interesting alternatives to conventional culture. We assessed the laboratory performances of Mycoplasma IES (IES), the Mycofast Revolution (REV) and Mycoplasma IST 2 (IST2) compared to A7 agar plates for the detection of Ureaplasma urealyticum and Mycoplasma hominis in clinical samples. Methodology: From April to July 2013, endocervical or vaginal samples were collected from sexually active women with abnormal vaginal discharge. Each specimen was tested in parallel using the three commercial kits and the A7 agar plates. Results: A total of 303 samples were included in this study, 35.6% (108/303) of which were positive on A7 plates. Sensitivities for the detection of U. urealyticum of IES, REV and IST2 were 100%, 96.2% and 95.3%, respectively while those for M. hominis were of 92.8%, 92.8% and 85.7%, respectively. Specificity was 100% for the 3 methods. Concerning antimicrobial susceptibility testing, full agreement between IES and REV was documented. Conclusions: The Mycoplasma IES kit was found to be equivalent or superior compared to other commercial culture-based assays for a rapid and accurate identification of U. urealyticum and M. hominis and detection of resistance. It might be considered a cost-effective tool for detection of these organisms, particularly attractive in developing countries. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
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