164 results on '"Sczyrba, Alexander"'
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2. Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
3. Thousands of small, novel genes predicted in global phage genomes
4. Critical Assessment of Metagenome Interpretation: the second round of challenges
5. Adaptation of a microbial community to demand-oriented biological methanation
6. Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
7. Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19
8. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
9. An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome
10. Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
11. Haploflow: strain-resolved de novo assembly of viral genomes
12. Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
13. Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
14. Bioinformatics for NGS-based metagenomics and the application to biogas research
15. Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
16. ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
17. Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
18. Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
19. Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
20. An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
21. miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineering
22. Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems
23. CAMISIM: simulating metagenomes and microbial communities
24. Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
25. Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics.
26. NFDI4Microbiota - national research data infrastructure for microbiota research.
27. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
28. UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
29. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
30. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
31. Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities.
32. Genlight: Interactive high-throughput sequence analysis and comparative genomics
33. Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages.
34. The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses.
35. Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen Habitats.
36. Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel Lineages.
37. Base4NFDI - Basic Services for NFDI: Creating NFDI-wide basic services in a world of specific domains.
38. Insights into the phylogeny and coding potential of microbial dark matter
39. Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
40. Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server
41. Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
42. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
43. AGenDA: gene prediction by cross-species sequence comparison
44. AGenDA: homology-based gene prediction
45. AltAVisT: Comparing alternative multiple sequence alignments
46. EMMA: a platform for consistent storage and efficient analysis of microarray data
47. IsoSVM – Distinguishing isoforms and paralogs on the protein level
48. Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.
49. Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.
50. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
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