18 results on '"Theodore Johnson"'
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2. Which nursing home workers were at highest risk for SARS-CoV-2 infection during the November 2020–February 2021 winter surge of COVID-1?
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Joseph Kellogg, William Dube, Carly Adams, Matthew Collins, Theodore Lopman, Theodore Johnson, Avnika Amin, Joshua Weitz, and Scott Fridkin
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Nursing home (NH) residents and staff were at high risk for COVID-19 early in the pandemic; several studies estimated seroprevalence of infection in NH staff to be 3-fold higher among CNAs and nurses compared to other staff. Risk mitigation added in Fall 2020 included systematic testing of residents and staff (and furlough if positive) to reduce transmission risk. We estimated risks for SARS-CoV-2 infection among NH staff during the first winter surge before widespread vaccination. Methods: Between February and May 2021, voluntary serologic testing was performed on NH staff who were seronegative for SARS-CoV-2 in late Fall 2020 (during a previous serology study at 14 Georgia NHs). An exposure assessment at the second time point covered prior 3 months of job activities, community exposures, and self-reported COVID-19 vaccination, including very recent vaccination (≤4 weeks). Risk factors for seroconversion were estimated by job type using multivariable logistic regression, accounting for interval community-incidence and interval change in resident infections per bed. Results: Among 203 eligible staff, 72 (35.5%) had evidence of interval seroconversion (Fig. 1). Among 80 unvaccinated staff, interval infection was significantly higher among CNAs and nurses (aOR, 4.9; 95% CI, 1.4–20.7) than other staff, after adjusting for race and interval community incidence and facility infections. This risk persisted but was attenuated when utilizing the full study cohort including those with very recent vaccination (aOR, 1.8; 95% CI, 0.9–3.7). Conclusions: Midway through the first year of the pandemic, NH staff with close or common resident contact continued to be at increased risk for infection despite enhanced infection prevention efforts. Mitigation strategies, prior to vaccination, did not eliminate occupational risk for infection. Vaccine utilization is critical to eliminate occupational risk among frontline healthcare providers.
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- 2022
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3. Liposome-siRNA-peptide complexes cross the blood-brain barrier and significantly decrease PrP on neuronal cells and PrP in infected cell cultures.
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Bruce Pulford, Natalia Reim, Aimee Bell, Jessica Veatch, Genevieve Forster, Heather Bender, Crystal Meyerett, Scott Hafeman, Brady Michel, Theodore Johnson, A Christy Wyckoff, Gino Miele, Christian Julius, Jan Kranich, Alan Schenkel, Steven Dow, and Mark D Zabel
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Medicine ,Science - Abstract
BACKGROUND: Recent advances toward an effective therapy for prion diseases employ RNA interference to suppress PrP(C) expression and subsequent prion neuropathology, exploiting the phenomenon that disease severity and progression correlate with host PrP(C) expression levels. However, delivery of lentivirus encoding PrP shRNA has demonstrated only modest efficacy in vivo. METHODOLOGY/PRINCIPAL FINDINGS: Here we describe a new siRNA delivery system incorporating a small peptide that binds siRNA and acetylcholine receptors (AchRs), acting as a molecular messenger for delivery to neurons, and cationic liposomes that protect siRNA-peptide complexes from serum degradation. CONCLUSIONS/SIGNIFICANCE: Liposome-siRNA-peptide complexes (LSPCs) delivered PrP siRNA specifically to AchR-expressing cells, suppressed PrP(C) expression and eliminated PrP(RES) formation in vitro. LSPCs injected intravenously into mice resisted serum degradation and delivered PrP siRNA throughout the brain to AchR and PrP(C)-expressing neurons. These data promote LSPCs as effective vehicles for delivery of PrP and other siRNAs specifically to neurons to treat prion and other neuropathological diseases.
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- 2010
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4. 'Caring for Junior' - A Problem-Based Learning Case
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Jonathan Flacker and Theodore Johnson
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Dementia ,Depression ,Antidepressive Agents ,Falls ,Accidental ,Medicine (General) ,R5-920 ,Education - Abstract
Abstract Introduction Epidemiological studies suggest that as many as 45% of adults 85 years or older have cognitive impairment. To help prepare our first-year medical students to work with this population, we created this problem-based learning case. Methods The case follows our patient, Junior, from initial presentation in the outpatient clinic, through an acute hospitalization, and finally to discharge to an assisted living facility. The case, at our institution, unfolds over 3 weeks but is adaptable to many formats, typically with groups of 8 students meeting for 90 minutes. The case touches many aspects of the care of older patients including functional assessment, cognitive evaluation, appropriate medication use, falls, and sites of care. Results This case has been highly successful; it is now in the fourth year of continuous use. A student-generated learning issue analysis has confirmed that the issues the case was designed to teach are being identified and researched by the students. Discussion The case materials are designed for easy use by group preceptors who are not geriatricians.
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- 2007
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5. The Role of the Comprehensive Geriatric Assessment in the Evaluation of the Older Cancer Patient
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Carmelo, Blanquicett, Jonathon B, Cohen, Christopher, Flowers, and Theodore, Johnson
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Cancer Survivors ,Neoplasms ,Age Factors ,Disease Management ,Humans ,Nutritional Status ,Comorbidity ,Medical Oncology ,Geriatric Assessment ,Aged ,Randomized Controlled Trials as Topic - Abstract
Geriatric assessments have now been recommended as part of the standard evaluation of an older adult considering cancer therapy. While the need for a more in-depth performance status evaluation of an older person with cancer was identified over 20 years ago, completion of a comprehensive geriatric assessment (CGA) is time-consuming and not frequently performed as part of the standard assessment of older cancer patients. Evidence suggests that incorporating such an evaluation could be useful for potentially determining the patient's chemotherapy tolerability or treatment completion, toxicity, and survival, as age alone has been shown to poorly predict treatment failure, and performance status assessments commonly used in oncology practice may lack predictability. This review describes the increasing role of the CGA and geriatric assessment screening tools as well as their pertinent domains across various settings in the evaluation of the older adult with cancer who is considering cancer treatment.
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- 2019
6. Complement protein C3 exacerbates prion disease in a mouse model of chronic wasting disease
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Crystal Meyerett-Reid, Glenn C. Telling, A. Christy Wyckoff, Bruce Pulford, Heather Bender, Mark D. Zabel, Brady Michel, Theodore Johnson, and Adam Ferguson
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Genetically modified mouse ,Prions ,animal diseases ,Immunology ,Spleen ,Disease ,Biology ,Pathogenesis ,Mice ,medicine ,Animals ,Immunology and Allergy ,Original Research ,Mice, Knockout ,Innate immune system ,Follicular dendritic cells ,Complement C3 ,General Medicine ,Chronic wasting disease ,medicine.disease ,Virology ,nervous system diseases ,Complement system ,Disease Models, Animal ,medicine.anatomical_structure ,Disease Progression ,Wasting Disease, Chronic - Abstract
Accumulating evidence shows a critical role of the complement system in facilitating attachment of prions to both B cells and follicular dendritic cells and assisting in prion replication. Complement activation intensifies disease in prion-infected animals, and elimination of complement components inhibits prion accumulation, replication and pathogenesis. Chronic wasting disease (CWD) is a highly infectious prion disease of captive and free-ranging cervid populations that utilizes the complement system for efficient peripheral prion replication and most likely efficient horizontal transmission. Here we show that complete genetic or transient pharmacological depletion of C3 prolongs incubation times and significantly delays splenic accumulation in a CWD transgenic mouse model. Using a semi-quantitative prion amplification scoring system we show that C3 impacts disease progression in the early stages of disease by slowing the rate of prion accumulation and/or replication. The delayed kinetics in prion replication correlate with delayed disease kinetics in mice deficient in C3. Taken together, these data support a critical role of C3 in peripheral CWD prion pathogenesis.
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- 2013
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7. Scalable Scheduling of Updates in Streaming Data Warehouses
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Lukasz Golab, Vladislav Shkapenyuk, and Theodore Johnson
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Data stream ,Data consistency ,Job shop scheduling ,Computer science ,Data stream mining ,Distributed computing ,Real-time computing ,Data warehouse ,Computer Science Applications ,Scheduling (computing) ,Data modeling ,Computational Theory and Mathematics ,Scalability ,Information Systems - Abstract
We discuss update scheduling in streaming data warehouses, which combine the features of traditional data warehouses and data stream systems. In our setting, external sources push append-only data streams into the warehouse with a wide range of interarrival times. While traditional data warehouses are typically refreshed during downtimes, streaming warehouses are updated as new data arrive. We model the streaming warehouse update problem as a scheduling problem, where jobs correspond to processes that load new data into tables, and whose objective is to minimize data staleness over time (at time t, if a table has been updated with information up to some earlier time r, its staleness is t minus r). We then propose a scheduling framework that handles the complications encountered by a stream warehouse: view hierarchies and priorities, data consistency, inability to preempt updates, heterogeneity of update jobs caused by different interarrival times and data volumes among different sources, and transient overload. A novel feature of our framework is that scheduling decisions do not depend on properties of update jobs (such as deadlines), but rather on the effect of update jobs on data staleness. Finally, we present a suite of update scheduling algorithms and extensive simulation experiments to map out factors which affect their performance.
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- 2012
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8. Editorial: Improving the nutritional content and quality of plants: promises, achievements, and future challenges, volume II.
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Ricachenevsky, Felipe Klein, Wilton Vasconcelos, Marta, Huixia Shou, Theodore Johnson, Alexander Arthur, and Sperotto, Raul Antonio
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ACHIEVEMENT ,FOOD security ,FOOD safety ,BIOFORTIFICATION - Published
- 2023
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9. Decision support queries on a tape-resident data warehouse
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Damianos Chatziantoniou and Theodore Johnson
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Data stream ,SQL ,Database ,Computer science ,InformationSystems_DATABASEMANAGEMENT ,Terabyte ,computer.software_genre ,Query optimization ,Data warehouse ,Data set ,Spatial query ,Hardware and Architecture ,In-Memory Processing ,Query by Example ,Sargable ,Data mining ,computer ,Software ,Information Systems ,computer.programming_language - Abstract
Data warehouses collect masses of operational data, allowing analysts to extract information by issuing decision support queries on the otherwise discarded data. In many application areas (e.g. telecommunications), the warehoused data sets are multiple terabytes in size. Parts of these data sets are stored on very large disk arrays, while the remainder is stored on tape-based tertiary storage (which is one to two orders of magnitude less expensive than on-line storage). However, the inherently sequential nature of access to tape-based tertiary storage makes the efficient access to tape-resident data difficult to accomplish through conventional databases.In this paper, we present a way to make access to a massive tape-resident data warehouse easy and efficient. Ad hoc decision support queries usually involve large scale and complex aggregation over the detail data. These queries are difficult to express in SQL, and frequently require self-joins on the detail data (which are prohibitively expensive on the disk-resident data and infeasible to compute on tape-resident data), or unnecessary multiple passes through the detail data. An extension to SQL, the extended multi feature SQL (EMF SQL) expresses complex aggregation computations in a clear manner without using self-joins. The detail data in a data warehouse usually represents a record of past activities, and therefore is temporal. We show that complex queries involving sequences can be easily expressed in EMF SQL. An EMF SQL query can be optimized to minimize the number of passes through the detail data required to evaluate the query, in many cases to only one pass. We describe an efficient query evaluation algorithm along with a query optimization algorithm that minimizes the number of passes through the detail data, and which minimizes the amount of main memory required to evaluate the query. These algorithms are useful not only in the context of tape-resident data warehouses but also in data stream systems which require similar processing techniques.
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- 2005
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10. Measurement and analysis of IP network usage and behavior
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K.K. Ramakrishnan, Ramón Cáceres, J.E. van der Memle, R. Greer, Nick Duffield, Balachander Krishnamurthy, Jennifer Rexford, Albert Greenberg, D. Lavelle, Charles Robert Kalmanek, Theodore Johnson, Frederick True, J.D. Friedmann, Partho Pratim Mishra, and Anja Feldmann
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Computer Networks and Communications ,Computer science ,Network information system ,computer.internet_protocol ,Overlay network ,Internet traffic engineering ,law.invention ,Network simulation ,Internet protocol suite ,law ,Next-generation network ,Internet Protocol ,H.323 ,Electrical and Electronic Engineering ,IP address management ,Network architecture ,business.industry ,Network mapping ,Telecommunications network ,Network traffic control ,Computer Science Applications ,Internet Connection Sharing ,IP tunnel ,Network planning and design ,Intelligent computer network ,Dynamic circuit network ,The Internet ,business ,computer ,Network management station ,Computer network - Abstract
Traffic, usage, and performance measurements are crucial to the design, operation and control of Internet protocol networks. This article describes a prototype infrastructure for the measurement, storage, and correlation of network data of different types and origins from AT&T's commercial IP network. We focus first on some novel aspects of the measurement infrastructure, then describe analyses that illustrate the power of joining different measured data sets for network planning and design.
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- 2000
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11. A new approach to finding objects in programs
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Panos E. Livadas and Theodore Johnson
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Identification (information) ,Engineering drawing ,General Computer Science ,Computer science ,Human–computer interaction ,Software maintainer ,Integrated software ,Code (cryptography) ,Software maintenance ,Object (computer science) ,Representation (mathematics) ,Object-oriented design - Abstract
Software maintenance is difficult and costly because the maintainer must understand the existing relationships in the maintained code. The maintainer's job can be made considerably easier if the objects in the code (related groups of types, data, and procedures) are identified. In this paper, we discuss methods for identifying objects in programs, and present a new approach that relies on these key features. First, our internal program representation (IPR) lets us make a more precise identification of objects than previous methods allowed. Second, we introduce the idea of receiver-based object identification. Third, we introduce the idea of two-step object identification, which gives the user greater control in precisely identifying objects. Our object finding tool can be used with the other tools our IPR provides to create an integrated software maintenance environment.
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- 1994
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12. A nonblocking algorithm for shared queues using compare-and-swap
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S. Prakash, Yann Hang Lee, and Theodore Johnson
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Queueing theory ,Computer science ,business.industry ,Concurrency ,Parallel computing ,Theoretical Computer Science ,Compare-and-swap ,Computational Theory and Mathematics ,Hardware and Architecture ,Robustness (computer science) ,Concurrent computing ,Algorithm design ,business ,Algorithm ,Queue ,Software ,Computer network - Abstract
Nonblocking algorithms for concurrent objects guarantee that an object is always accessible, in contrast to blocking algorithms in which a slow or halted process can render part or all of the data structure inaccessible to other processes. A number of algorithms have been proposed for shared FIFO queues, but nonblocking implementations are few and either limit the concurrency or provide inefficient solutions. The authors present a simple and efficient nonblocking shared FIFO queue algorithm with O(n) system latency, no additional memory requirements, and enqueuing and dequeuing times independent of the size of the queue. They use the compare & swap operation as the basic synchronization primitive. They model their algorithm analytically and with a simulation, and compare its performance with that of a blocking FIFO queue. They find that the nonblocking queue has better performance if processors are occasionally slow, but worse performance if some processors are always slower than others. >
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- 1994
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13. A PARALLEL ALGORITHM FOR SURFACE TRIANGULATION
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Panos E. Livadas, Sunjay E. Talele, and Theodore Johnson
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Surface (mathematics) ,Theoretical computer science ,General Computer Science ,Computer science ,Message passing ,Path (graph theory) ,Parallel algorithm ,Triangulation (social science) ,Surface triangulation ,Algorithm ,Surface reconstruction ,ComputingMethodologies_COMPUTERGRAPHICS ,Toroidal graph - Abstract
In many scientific fields, three dimensional surfaces must be reconstructed from a given collection of its surface points. Applications for surface reconstruction exist in medical research and diagnosis as well as in design intensive disciplines. Fuchs, Kedem, and Uselton and Keppel show that surface reconstruction via triangulation can be reduced to the problem of finding a path in a toroidal graph. This paper presents a parallel algorithm to find the minimum cost acceptable path in an m by n toroidal graph. We then show an implementation of the parallel algorithm on a parallel architecture, using a message passing approach. Results are shown, along with suggestions for future enhancements.
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- 1994
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14. A bistability throughput phenomenon in a shared-memory MIMD machine
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Daniel V. Pryor, John M. Conroy, Raymond R. Glenn, and Theodore Johnson
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Critical section ,Record locking ,Bistability ,Computer science ,Process (computing) ,Thread (computing) ,Parallel computing ,Lock (computer science) ,Synchronization ,Theoretical Computer Science ,MIMD ,Shared memory ,Hardware and Architecture ,Queue ,Throughput (business) ,Software ,Information Systems - Abstract
This paper examines a previously unanalyzed bistability phenomenon with respect to the number of threads that are doing useful work. This phenomenon is illustrated by a single work queue on a shared-memory machine. An analysis of designs that use two separate memory accesses to lock and unlock critical sections (split transaction) and that employ a first come/first serve queuing mechanism for shared-memory locations is presented. A bistability in the number of threads working, brought about by these conditions, is analyzed and experimentally demonstrated. A simple analysis is presented which predicts the throughput at a critical section of code as a function of the number of applied threads. The study concludes that the mean size of the work items that can be executed in parallel without the possibility of stalling is proportional to the square of the number of threads applied.
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- 1993
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15. The performance of current B-tree algorithms
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Dennis Sasha and Theodore Johnson
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Concurrent data structure ,Computer science ,Serialization ,Concurrency ,Response time ,Parallel computing ,computer.software_genre ,Bottleneck ,B-tree ,Transaction processing system ,Throughput (business) ,computer ,Algorithm ,Information Systems - Abstract
Many concurrent B-tree algorithms have been proposed, but their performances have not yet been analyzed satisfactorily. When transaction processing systems require high levels of concurrency, a restrictive serialization technique on the B-tree index can cause a bottleneck. In this paper we present a framework for constructing analytical performance models of concurrent B-tree algorithms. The models can predict the response time and maximum throughput. We analyze a variety of locking algorithms including naive lock-coupling, optimistic descent, two-phase locking, and the Lehman-Yao algorithm. The analyses are validated by simulations of the algorithms on actual B-trees, as well as by simulations done by other researchers
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- 1993
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16. Editorial: Improving the nutritional content and quality of plants: promises, achievements, and future challenges, volume II
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Felipe Klein Ricachenevsky, Marta Wilton Vasconcelos, Huixia Shou, Alexander Arthur Theodore Johnson, and Raul Antonio Sperotto
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nutritional quality ,nutrients ,food safety ,biofortification ,food security ,Plant culture ,SB1-1110 - Published
- 2023
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17. Editorial: Wheat biofortification to alleviate global malnutrition
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Maria Itria Ibba, Om Prakash Gupta, Velu Govindan, Alexander Arthur Theodore Johnson, Henrik Brinch-Pedersen, Miroslav Nikolic, and Victor Taleon
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wheat biofortification ,malnutrition ,micronutrient ,bioavailability ,GWAS—genome-wide association study ,Nutrition. Foods and food supply ,TX341-641 - Published
- 2022
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18. Editorial: Improving the Nutritional Content and Quality of Crops: Promises, Achievements, and Future Challenges
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Felipe Klein Ricachenevsky, Marta Wilton Vasconcelos, Huixia Shou, Alexander Arthur Theodore Johnson, and Raul Antonio Sperotto
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nutritional quality ,biofortification ,plant nutrition ,iron ,zinc ,transporter ,Plant culture ,SB1-1110 - Published
- 2019
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