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4. A systematic review of influenza virus in water environments across human, poultry, and wild bird habitats

Author

Kenmoe, S, Takuissu, GR, Ebogo-Belobo, JT, Kengne-Ndé, C, Mbaga, DS, Bowo-Ngandji, A, Ondigui Ndzie, JL, Kenfack-Momo, R, Tchatchouang, S, Lontuo Fogang, R, Zeuko'o Menkem, E, Kame-Ngasse, GI, Magoudjou-Pekam, JN, Puzelli, S, Lucentini, L, Veneri, C, Mancini, P, Bonanno Ferraro, G, Iaconelli, M, Del Giudice, C, Brandtner, D, Suffredini, E, and La Rosa, G

Published
2024
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5. Wastewater surveillance of SARS-CoV-2 variants in October–November 2022 in Italy: detection of XBB.1, BA.2.75 and rapid spread of the BQ.1 lineage

Author

Palma, Achille, Calabria, Adelaide, Carnevali, Agnese, Nehludoff, Albano, Stenico, Alberta, Izzotti, Alberto, Barca, Alessandra, Tosco, Alessandra, Porta, Amalia, Lombardi, Annalisa, Voli, Antonia, Franzetti, Andrea, Ciccaglione, Angela, Costa, Angela, D’Argenzio, Angelo, Romano, Angelo, Pariani, Anna, Carducci, Annalaura, Grucci, Annalisa, Prast, Anna-Maria, Agodi, Antonella, Cersini, Antonella, Giorgi, Antonella, Bertasi, Barbara, Griglio, Bartolomeo, Ancona, Carla, Maida, Carmelo Massimo, Montanaro, Carmen, Filizzolo, Chiara, Ottaviano, Claudio, Cocuzza, Clementina, Pignata, Cristina, Nasci, Daniele, Cereda, Danilo, Oliva, Desdemona, Giorgi, Doriana Antonella, Malacaria, Edoardo, Grasselli, Elena, Nicosia, Elena, Carraro, Elisabetta, Ammoni, Emanuela, Grange, Eric, Federici, Ermanno, Filippetti, Fabio, Tramuto, Fabio, Guarneri, Flavia, Serio, Flavia, Damasco, Florida, Palumbo, Franca, Apollonio, Francesca, Cutrupi, Francesca, Gucciardi, Francesca, Pennino, Francesca, Russo, Francesca, Triggiano, Francesco, Rigoli, Franco, Pietrella, Gabriele, Trani, Gabriella, Rossolini, Gian Maria, Bulotta, Giorgia, Fusco, Giovanna, La Vecchia, Giovanna, Alborali, Giovanni, Giammanco, Giovanni, Santoro, Giovanni, Pitter, Gisella, Purpari, Giuseppa, Aprea, Giuseppe, Di Vittorio, Giuseppe, Folino, Giuseppe, Lauria, Giuseppe, Federigi, Ileana, Amoruso, Irene, Ferrante, Irene, Tomesani, Irene, De Lellis, Laura, Pellegrinelli, Laura, Demetz, Lea, Gentili, Lisa, Richiardi, Lisa, Zago, Lorella, Masieri, Lorena, Decastelli, Lucia, Bolognini, Luigi, Cossentino, Luigi, Bianchi, Manila, Verani, Marco, Zampini, Marco, Ferrante, Margherita, Cadonna, Maria, Montagna, Maria Teresa, Scicluna, Maria Teresa, Arizzi, Mariaconcetta, Mariuz, Marika, Palermo, Mario, Bellisomi, Marta, Paniccià, Marta, Barchitta, Martina, Ramazzotti, Matteo, Postinghel, Mattia, Viscardi, Maurizio, Ruffier, Mauro, Petricciuolo, Maya, La Bianca, Michele, Colitti, Michele, Monfrinotti, Monica, Fontani, Nadia, Formenti, Nicoletta, Mongelli, Onofrio, De Giglio, Osvalda, Angelini, Paola, Foladori, Paola, Torlontano, Paolo, Calà, Piergiuseppe, Cifarelli, Rosa Anna, Binda, Sandro, Briscolini, Sara, Castiglioni, Sara, Bonetta, Silvia, Magi, Silvia, Scattolini, Silvia, Schiarea, Silvia, De Grazia, Simona, Rosatto, Stefano, Baldovin, Tatjana, Primache, Valeria, Groppi, Vanessa, Acciari, Vicdalia Aniela, Mazzucco, Walter, La Rosa, G., Brandtner, D., Bonanno Ferraro, G., Veneri, C., Mancini, P., Iaconelli, M., Lucentini, L., Del Giudice, C., Orlandi, L., and Suffredini, E.

Published
2023
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6. The rapid spread of SARS-COV-2 Omicron variant in Italy reflected early through wastewater surveillance

Author

Palma, Achille, Stenico, Alberta, Antonelli, Alberto, Izzotti, Alberto, Schiavuzzi, Alessandra, Tosco, Alessandra, Porta, Amalia, Franzetti, Andrea, Turolla, Andrea, Costa, Angela, D’Argenzio, Angelo, Romano, Angelo, Pariani, Anna, Carducci, Annalaura, Prast, Anna-Maria, Agodi, Antonella, Cersini, Antonella, Pizzolante, Antonio, Azzellino, Arianna, Bertasi, Barbara, Griglio, Bartolomeo, Ancona, Carla, Maida, Carmelo Massimo, Montanaro, Carmen, Ottaviano, Claudio, Cocuzza, Clementina, Pignata, Cristina, Nasci, Daniele, Cereda, Danilo, Oliva, Desdemona, Giorgi, Doriana Antonella, Grasselli, Elena, Mengon, Elena, Nicosia, Elena, Carraro, Elisabetta, Ammoni, Emanuela, Ricci, Enrica, Grange, Eric, Federici, Ermanno, Zuccato, Ettore, Filippetti, Fabio, Zuccon, Fabio, Guarneri, Flavia, Damasco, Florida, Palumbo, Franca, Apollonio, Francesca, Borney, Francesca, Ciuti, Francesca, Cutrupi, Francesca, Malpei, Francesca, Pennino, Francesca, Russo, Francesca, Pizzo, Francesco, Triggiano, Francesco, Rigoli, Franco, Trani, Gabriella, Cecchini, Giancarlo, Borlone, Gianluca, Allaria, Giorgia, Bertanza, Giorgio, Fusco, Giovanna, La Vecchia, Giovanna, Alborali, Giovanni, Giammanco, Giovanni, Santoro, Giovanni, Pitter, Gisella, Lauretani, Giulia, Nani, Giulia, Purpari, Giuseppa, Aprea, Giuseppe, Bucciarelli, Giuseppe, Di Vittorio, Giuseppe, Lauria, Giuseppe, Federigi, Ileana, Amoruso, Irene, Ferrante, Irene, De Lellis, Laura, Gentili, Lisa, Zago, Lorella, Decastelli, Lucia, Bolognini, Luigi, Cossentino, Luigi, Bianchi, Manila, Antonelli, Manuela, Guercio, Marco, Verani, Marco, Zampini, Marco, Ferrante, Margherita, Cadonna, Maria, Cerroni, Maria Grazia, Callegari, Maria Luisa, Montagna, Maria Teresa, Scicluna, Maria Teresa, Arizzi, Mariaconcetta, Mariuz, Marika, Losio, Marina Nadia, Palermo, Mario, Paniccià, Marta, Triassi, Maria, Barchitta, Martina, Ramazzotti, Matteo, Postinghel, Mattia, Cravero, Mauro, Ruffier, Mauro, Petricciuolo, Maya, La Bianca, Michele, Colitti, Michele, Monfrinotti, Monica, Fontani, Nadia, Ungaro, Nicola, Formenti, Nicoletta, Mongelli, Onofrio, De Giglio, Osvalda, Angelini, Paola, Foladori, Paola, Torlontano, Paolo, Montenegro, Patrizia, Laura, Pellegrinelli, Calà, Piergiuseppe, Olivares, Renato, Berruti, Renza, Cifarelli, Rosa Anna, Brienza, Rosanna, Binda, Sandro, Briscolini, Sara, Castiglioni, Sara, Muzio, Sara, Manara, Serena, Bonetta, Silvia, Magi, Silvia, Riosa, Silvia, Schiarea, Silvia, De Grazia, Simona, Barigelli, Sofia, Rosatto, Stefano, Baldovin, Tatjana, Capparuccini, Valeria, Primache, Valeria, Groppi, Vanessa, Mazzucco, Walter, La Rosa, G., Iaconelli, M., Veneri, C., Mancini, P., Bonanno Ferraro, G., Brandtner, D., Lucentini, L., Bonadonna, L., Rossi, M., Grigioni, M., and Suffredini, E.

Published
2022
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11. Exploring adenovirus in water environments: a systematic review and meta-analysis.

Author

Takuissu, G. R., Kenmoe, S., Ebogo-Belobo, J. T., Kengne-Ndé, C., Mbaga, D. S., Bowo-Ngandji, A., Ondigui Ndzie, J. L., Kenfack-Momo, R., Tchatchouang, S., Kenfack-Zanguim, J., Lontuo Fogang, R., Zeuko'o Menkem, E., Kame-Ngasse, G. I., Magoudjou-Pekam, J. N., Suffredini, E., Veneri, C., Mancini, P., Bonanno Ferraro, G., Iaconelli, M., and Verani, M.

Subjects
ENVIRONMENTAL health, RISK assessment, NATURE, ADENOVIRUSES, DEVELOPED countries, AQUATIC microbiology, META-analysis, DESCRIPTIVE statistics, SYSTEMATIC reviews, WATER pollution, WATER, DEVELOPING countries, VIRUS diseases, SEWAGE, DISEASE risk factors
Abstract

Adenoviruses (AdVs) have a significant impact in both medical and environmental contexts. The objective of this study was to investigate the prevalence of AdV in different water types, such as untreated and treated wastewater, surface water, groundwater, drinking water, and other water matrices. A total of 239 articles were included in this meta-analysis. Adenoviruses were detected in various waters worldwide. The overall prevalence in water was found to be 59.2%, with the highest prevalence in untreated wastewater (83.1%) and treated wastewater (75.3%), followed by "other water matrices" (53.4%), surface water (49.5%) drinking water (22.7%), and groundwater (18.5%). Most of the studies did not assess the viability of the viruses, leading to weak links between water contamination and risk. Both human and animal AdV were found in water environments. The findings suggest that water, including drinking water, could be a significant route of AdV transmission in both developed and developing economies. [ABSTRACT FROM AUTHOR]

Published
2024
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12. A State-of-the-Art Scoping Review on SARS-CoV-2 in Sewage Focusing on the Potential of Wastewater Surveillance for the Monitoring of the COVID-19 Pandemic.

Author

Bonanno Ferraro, G., Veneri, C., Mancini, P., Iaconelli, M., Suffredini, E., Bonadonna, L., Lucentini, L., Bowo-Ngandji, A., Kengne-Nde, C., Mbaga, D. S., Mahamat, G., Tazokong, H. R., Ebogo-Belobo, J. T., Njouom, R., Kenmoe, S., and La Rosa, G.

Abstract

The outbreak of coronavirus infectious disease-2019 (COVID-19), caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), has rapidly spread throughout the world. Several studies have shown that detecting SARS-CoV-2 in untreated wastewater can be a useful tool to identify new outbreaks, establish outbreak trends, and assess the prevalence of infections. On 06 May 2021, over a year into the pandemic, we conducted a scoping review aiming to summarize research data on SARS-CoV-2 in sewage. Papers dealing with raw sewage collected at wastewater treatment plants, sewer networks, septic tanks, and sludge treatment facilities were included in this review. We also reviewed studies on sewage collected in community settings such as private or municipal hospitals, healthcare facilities, nursing homes, dormitories, campuses, airports, aircraft, and cruise ships. The literature search was conducted using the electronic databases PubMed, EMBASE, and Web Science Core Collection. This comprehensive research yielded 1090 results, 66 of which met the inclusion criteria and are discussed in this review. Studies from 26 countries worldwide have investigated the occurrence of SARS-CoV-2 in sewage of different origin. The percentage of positive samples in sewage ranged from 11.6 to 100%, with viral concentrations ranging from ˂LOD to 4.6 × 108 genome copies/L. This review outlines the evidence currently available on wastewater surveillance: (i) as an early warning system capable of predicting COVID-19 outbreaks days or weeks before clinical cases; (ii) as a tool capable of establishing trends in current outbreaks; (iii) estimating the prevalence of infections; and (iv) studying SARS-CoV-2 genetic diversity. In conclusion, as a cost-effective, rapid, and reliable source of information on the spread of SARS-CoV-2 and its variants in the population, wastewater surveillance can enhance genomic and epidemiological surveillance with independent and complementary data to inform public health decision-making during the ongoing pandemic. [ABSTRACT FROM AUTHOR]

Published
2022
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13. Hepatitis E Virus in Water Environments: A Systematic Review and Meta-analysis.

Author

Takuissu, G. R., Kenmoe, S., Ndip, L., Ebogo-Belobo, J. T., Kengne-Ndé, C., Mbaga, D. S., Bowo-Ngandji, A., Oyono, M. G., Kenfack-Momo, R., Tchatchouang, S., Kenfack-Zanguim, J., Lontuo Fogang, R., Zeuko'o Menkem, E., Kame-Ngasse, G. I., Magoudjou-Pekam, J. N., Nkie Esemu, S., Veneri, C., Mancini, P., Bonanno Ferraro, G., and Iaconelli, M.

Abstract

Hepatitis E virus (HEV) is responsible for acute hepatitis in humans, through foodborne, zoonotic, and waterborne transmission routes. This study aimed to assess the prevalence of HEV in water matrices. Six categories were defined: untreated and treated wastewater, surface water (river, lake, and seawater), drinking water, groundwater, and other water environments (irrigation water, grey water, reservoir water, flood water, and effluent of pig slaughterhouse). We searched PubMed, Web of Science, Global Index Medicus, and Excerpta Medica Database. Study selection and data extraction were performed by at least two independent investigators. Heterogeneity (I2) was assessed using the χ2 test on the Cochran Q statistic and H parameter. Sources of heterogeneity were explored by subgroup analysis. This study is registered with PROSPERO, number CRD42021289116. We included 87 prevalence studies from 58 papers, 66.4% of which performed in Europe. The overall prevalence of HEV in water was 9.8% (95% CI 6.4–13.7). The prevalence was higher in untreated wastewater (15.1%) and lower in treated wastewater (3.8%) and in drinking water (4.7%). In surface water, prevalence was 7.4%, and in groundwater, the percentage of positive samples, from only one study available, was 8.3%. Overall, only 36.8% of the studies reported the genotype of HEV, with genotype 3 (HEV-3) prevalent (168 samples), followed by HEV-1 (148 sample), and HEV-4 (2 samples). High-income countries were the most represented with 59/87 studies (67.8%), while only 3/87 (3.5%) of the studies were performed in low-income countries. The overall prevalence obtained of this study was generally higher in industrialized countries. Risk of bias was low in 14.9% of the studies and moderate in 85.1%. The results of this review showed the occurrence of HEV in different waters environments also in industrialized countries with sanitation and safe water supplies. While HEV transmission to humans through water has been widely demonstrated in developing countries, it is an issue still pending in industrialized countries. Better knowledge on the source of pollution, occurrence, survival in water, and removal by water treatment is needed to unravel this transmission path. [ABSTRACT FROM AUTHOR]

Published
2022
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14. Evidence of Saffold virus circulation in Italy provided through environmental surveillance.

Author

Bonanno Ferraro, G., Mancini, P., Veneri, C., Iaconelli, M., Suffredini, E., Brandtner, D., and La Rosa, G.

Subjects
WATERBORNE infection, RESPIRATORY infections, VIRUSES, SEWAGE, GASTROENTERITIS
Abstract

Saffold virus (SAFV) is an emerging human cardiovirus associated with respiratory and gastrointestinal infection, and, more recently, to symptoms related to the endocrine, cardiovascular, and neurological systems. Information about SAFV circulation in Italy is scarce. In order to provide insights into the epidemiology of SAFV in Italy, 141 raw sewage samples collected throughout Italy were tested using broad‐range nested RT‐PCR primers targeting the 5′‐NC region. Seven samples (5·0%) were confirmed as SAFV in samples collected in North, Centre and Southern Italy. Typing was attempted through amplification of the VP1 coding region, using both published and newly designed primers, and one sample was characterized as SAFV‐2. Significance and Impact of the Study: Prevalence, genetic diversity and geographic distribution of SAFV in Italy is currently unknown. This study represents the first detection of SAFV in sewage samples in Italy, suggesting that it is circulating in the population despite lack of clinical reporting. Whether the virus is associated with asymptomatic cases or with undetected gastroenteritis or respiratory illness is unknown. Further studies are needed to investigate on the occurrence and persistence of SAFV in water environments and its waterborne transmission potential. [ABSTRACT FROM AUTHOR]

Published
2020
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16. Evidence for swine and human papillomavirus in pig slurry in Italy.

Author

Di Bonito, P., Galati, L., Focà, A., Brambilla, M., Bisaglia, C., Bonanno Ferraro, G., Mancini, P., Iaconelli, M., Veneri, C., and La Rosa, G.

Subjects
HUMAN papillomavirus vaccines, SLURRY, SWINE, WILD boar, PAPILLOMAVIRUSES, NUCLEOTIDE sequence, KNOWLEDGE gap theory, SEWAGE
Abstract

Aims: The diversity and the geographical distribution of swine papillomaviruses (PVs) are virtually unknown. The occurrence and the diversity of swine PV were therefore investigated in pig slurry collected in Italy, to contribute towards filling this gap in knowledge. Methods and Results: Twenty‐two slurry samples underwent analysis by nested PCR and DNA sequencing using published and newly designed specific primer pairs for Sus scrofa papillomavirus (SsPV) type 1 and 2 (SsPV1 and 2), along with degenerate PV‐specific primers targeting the major coat protein L1 and the helicase protein E1. Overall, three samples (13·6%) were positive for SsPV1 by specific primers, and nucleotide (nt) sequences showed 99–100% nt identity with SsPV1 variant a (EF395818), while SsPV2 was not found in any sample. Using generic primers, eight samples (36·4%) were tested positive for human papillomavirus (HPV), and were characterized as follows: β1‐HPV8, β1‐HPV14, β1‐HPV206, β2‐HPV113, β2‐HPV120 and γ1‐HPV173. Moreover, one unclassified γ‐type was detected. Conclusions: Both swine and human PVs were detected in pig slurry in this study. The unexpected presence of HPV in pig waste could be explained as the result of an improper use of the sewage collection pits and/or with improper procedures of the operators. Significance and Impact of the Study: This study reports the first detection of SsPV1 in Italy, along with the first detection of HPVs in pig slurry samples in Italy, and expands our knowledge about PV diversity and geographic distribution. [ABSTRACT FROM AUTHOR]

Published
2019
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