1. EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis
- Author
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Lothar Altschmied, Claude Becker, Detlef Weigel, Paride Rizzo, Ivo Grosse, Sarah Scharfenberg, Twan Rutten, Francesca Tedeschi, Bui Thi Mai Huong, Markus Kuhlmann, Andreas Czihal, and Helmut Bäumlein
- Subjects
0106 biological sciences ,0301 basic medicine ,Arabidopsis thaliana ,Ultraviolet Rays ,Physiology ,DNA repair ,Arabidopsis ,Flowers ,Plant Science ,EFFECTOR OF TRANSCRIPTION (ET) ,methylome ,Biology ,01 natural sciences ,Epigenesis, Genetic ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Transcription (biology) ,Epigenetics ,Genetics ,DNA methylation ,Whole Genome Sequencing ,Full Paper ,Arabidopsis Proteins ,Research ,Full Papers ,Plants, Genetically Modified ,genomic DNA ,Phenotype ,030104 developmental biology ,Differentially methylated regions ,chemistry ,Pyrimidine Dimers ,Seedlings ,Multigene Family ,Mutation ,DNA ,Transcription Factors ,010606 plant biology & botany - Abstract
Summary Plant‐specific EFFECTORS OF TRANSCRIPTION (ET) are characterised by a variable number of highly conserved ET repeats, which are involved in zinc and DNA binding. In addition, ETs share a GIY‐YIG domain, involved in DNA nicking activity. It was hypothesised that ETs might act as epigenetic regulators.Here, methylome, transcriptome and phenotypic analyses were performed to investigate the role of ET factors and their involvement in DNA methylation in Arabidopsis thaliana.Comparative DNA methylation and transcriptome analyses in flowers and seedlings of et mutants revealed ET‐specific differentially expressed genes and mostly independently characteristic, ET‐specific differentially methylated regions. Loss of ET function results in pleiotropic developmental defects.The accumulation of cyclobutane pyrimidine dimers after ultraviolet stress in et mutants suggests an ET function in DNA repair.
- Published
- 2018
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