1. Effective population size and heterozygosity-fitness correlations in a population of the Mediterranean lagoon ecotype of long-snouted seahorse Hippocampus guttulatus
- Author
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Cathy Lieutard-Haag, Giulia Serluca, Nicolas Bierne, Florentine Riquet, Lucy C. Woodall, Patrick Louisy, Julien Claude, Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Department of Zoology, University of Oxford, University of Oxford [Oxford], The Natural History Museum [London] (NHM), Ecosystèmes Côtiers Marins et Réponses aux Stress (ECOMERS), Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Université Côte d'Azur (UCA), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), University of Oxford, and Université Nice Sophia Antipolis (1965 - 2019) (UNS)
- Subjects
0106 biological sciences ,0301 basic medicine ,Population ,Zoology ,Population genetics ,Biology ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,010603 evolutionary biology ,01 natural sciences ,Effective population size ,03 medical and health sciences ,Genetics ,Inbreeding depression ,Inbreeding ,Heterozygosity-fitness correlations ,14. Life underwater ,education ,Ecology, Evolution, Behavior and Systematics ,education.field_of_study ,Genetic diversity ,[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,Population size ,Population effective size ,030104 developmental biology ,Marine endangered species ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Hippocampus guttulatus ,Genetic monitoring - Abstract
International audience; The management of endangered species is complicated in the marine environment owing to difficulties to directly access, track and monitor in situ. Population genetics provide a genuine alternative to estimate population size and inbreeding using non-lethal procedures. The long-snouted seahorse, Hippocampus guttulatus, is facing multiple threats such as human disturbance or by-catch, and has been listed in the red list of IUCN. One large population is found in the Thau lagoon, in the south of France. A recent study has shown this population belongs to a genetic lineage only found in Mediterranean lagoons that can be considered as an Evolutionarily Significant Unit (ESU) and should be managed with dedicated conservation strategies. In the present study, we used genetic analysis of temporal samples to estimate the effective population size of the Thau population and correlations between individual multilocus heterozygosity and fitness traits to investigate the possible expression of inbreeding depression in the wild. Non-invasive sampling of 172 seahorses for which profiles were pictured and biometric data recorded were genotyped using 291 informative SNPs. Genetic diversity remained stable over a 7-year time interval. In addition, very low levels of close relatedness and inbreeding were observed, with only a single pair of related individuals in 2008 and two inbreds in 2013. We did not detect departure from identity equilibrium. The effective population size was estimated to be Ne=2742 (~40 reproductive seahorses per km2), larger than previously thought. No correlation was observed between heterozygosity and fluctuating asymmetry or other morphometric traits, suggesting a population with low variance in inbreeding. Together these results suggest this population does not meet conventional genetic criteria of an endangered population, as the population seems sufficiently large to avoid inbreeding and its detrimental effects. This study paves the way for the genetic monitoring of this recently discovered ESU of a species with patrimonial and conservation concerns.
- Published
- 2019
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