1. Combined COI barcode-based methods to avoid mislabelling of threatened species of deep-sea skates
- Author
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Alessia Cariani, Alice Ferrari, Laura Carugati, Valentina Crobe, M. L. Geraci, S. P. Iglesias, Fausto Tinti, Rita Cannas, Al Cau, Paola Pesci, Maria Cristina Follesa, Riccardo Melis, L. Carugati, R. Melis, A. Cariani, A. Cau, V. Crobe, A. Ferrari, M. C. Follesa, M. L. Geraci, S. P. Iglésias, P. Pesci, F. Tinti, R. Cannas, Carugati L., Melis R., Cariani A., Cau A., Crobe V., Ferrari A., Follesa M.C., Geraci M.L., Iglesias S.P., Pesci P., Tinti F., Cannas R., Universita degli Studi di Cagliari [Cagliari], Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO), Institute for Biological Resources and Marine Biotechnology (IRBIM), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), and Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN)
- Subjects
0106 biological sciences ,Dipturu ,[SDV]Life Sciences [q-bio] ,species identification ,Dipturus ,Biology ,Barcode ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,Deep sea ,law.invention ,03 medical and health sciences ,law ,Species identification ,14. Life underwater ,specimen assignment ,030304 developmental biology ,Nature and Landscape Conservation ,0303 health sciences ,Ecology ,skates ,skate ,conservation ,15. Life on land ,biology.organism_classification ,Fishery ,species delimitation ,deep sea ,Threatened species - Abstract
International audience; Skates are characterised by conservative body morphology which hampers identification and leads to frequent taxonomic confusion and market mislabelling. Accurate specimen classification is crucial for reliable stock assessments and effective conservation plans, otherwise the risk of extinction could be unnoticed. The misclassification issue is evident for the genus Dipturus, distributed worldwide, from the continental shelf and slope to the deep sea. In this study, barcode cytochrome oxidase I gene (COI) sequences were used along with species delimitation and specimen assignment methods to improve taxonomy and zoogeography of species of conservation interest inhabiting the Atlantic Ocean and Mediterranean Sea. In this study, we provided new evidence of the occurence of D. nidarosiensis in the Central-Western Mediterranean Sea and the lack of Atlantic-Mediterranean genetic divergence. The Atlantic endangered species D. laevis and D. batis clustered together under the same molecular operational taxonomic unit (MOTU) with any delimitation methods used, while the assignment approach correctly discriminated specimens into the two species. These results provided evidence that the presence of the barcode gap is not an essential predictor of identification success, but the use of different approaches is crucially needed for specimen classification, especially when threshold-or tree-based methods result less powerful. The analyses also showed how different putative, vulnerable, species dwelling across SouthWestern Atlantic and SouthEastern Pacific are frequently misidentified in public sequence repositories. Our study emphasised the limits associated to public databases, highlighting the urgency to verify and implement the information deposited therein in order to guarantee accurate species identification and thus effective conservation measures for deep-sea skates.
- Published
- 2021
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