1. Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards
- Author
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Jason L. Brown, Panayiotis Pafilis, Mariana L. Lyra, Katharina C. Wollenberg Valero, D. James Harris, Tahar Slimani, Miguel Vences, Daniele Salvi, Alexander P. Turner, Benza Rodríguez Concepción, Abderrahim S’khifa, Sven Künzel, Miguel A. Carretero, Amy MacLeod, Salvador Carranza, Ali Turk Qashqaei, Iker Irisarri, Donald B. Miles, Sebastian Kirchhof, Pedro Galán, Johannes Müller, Emily Moriarty Lemmon, Anamarija Žagar, Ulrich Joger, Ariel Rodríguez, Loïs Rancilhac, Joan Garcia-Porta, Adnane Fawzi, Bayram Göçmen, Martin Kirchner, Faraham Ahmadzadeh, Noemí Rodríguez, Gonzalo Albaladejo, Eugenia Sanchez, Mehmet Anıl Oğuz, M Kariş, Hervé Philippe, Barry Sinervo, Giannina Koziel, Olga Jovanović Glavaš, Ignacio De la Riva, Octavio Jiménez-Robles, Jelka Crnobrnja-Isailović, Alan R. Lemmon, Manuel Nogales, Ege Üniversitesi, CREAF, Universitat Autònoma de Barcelona (UAB), Uppsala University, Museum für Naturkunde [Berlin], Tierärztliche Hochschule Hannover, Southern Illinois University [Carbondale] (SIU), University of Hull [United Kingdom], Shahid Beheshti University, Instituto de Productos Naturales y Agrobiologia = Institute of Natural Products and Agrobiology (IPNA), University of Belgrade [Belgrade], Museo Nacional de Ciencias Naturales [Madrid] (MNCN), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Université Cadi Ayyad [Marrakech] (UCA), Universidade da Coruña, Department of Astronomy and Space Sciences, Faculty of Science, University of Ege, 35100, Bornova, İzmir, Turkey, Universidade do Porto, Plant Sciences Division, Research School of Biology, The Australian National University, Staatliches Naturhistorisches Museum Braunschweig, University of Osijek, Program of Laboratory Technology, Department of Chemistry and Chemical Process Technologies, Acigöl Vocational School of Technical Sciences, Nevşehir Haci Bektaş Veli University, Braunschweig University of Technology, Max Planck Institute for Evolutionary Biology, Max-Planck-Gesellschaft, UNIVERSIDADE ESTADUAL PAULISTA RIO CLARO BRA, Partenaires IRSTEA, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Ohio University, National and Kapodistrian University of Athens (NKUA), University of L'Aquila [Italy] (UNIVAQ), National Institute of Biology [Ljubljana] (NIB), Florida State University [Tallahassee] (FSU), Institute of Evolutionary Biology, Station d'écologie théorique et expérimentale (SETE), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD), University of California, Department of Chemistry, Hull University, Ministerio de Economía y Competitividad (España), Universidade do Porto = University of Porto, Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS), University of California (UC), Washington University in Saint Louis, Leibniz Institute for Evolution and Biodiversity Science, Southern Illinois University, Kingston-Upon-Hull, G.C, c/Astrofísico Francisco Sánchez, CSIC, Cadi Ayyad University, Grupo de Investigación en Biología Evolutiva (GIBE), Ege University, University of Porto, Australian National University, Staatliches Naturhistorisches Museum, Nevşehir, Universidade Estadual Paulista (Unesp), National and Kapodistrian University of Athens, National Institute of Biology NIB, Dirac Science Library, Florida State University, Institute of Evolutionary Biology (CSIC-Universitat, Station of Theoretical and Experimental Ecology, and Coastal Biology Building
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Climate ,[SDV]Life Sciences [q-bio] ,General Physics and Astronomy ,Genome-wide substitution ,01 natural sciences ,Genome ,Evolutionsbiologi ,Animals ,Body Temperature Regulation ,Evolution, Molecular ,Lizards ,Phylogeny ,Environment ,Genetic Variation ,Temperature ,lcsh:Science ,Temperatures ,Multidisciplinary ,Phylogenetic tree ,Conservation biology ,Family lacertidae ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,Climate-change ecology ,Squamata ,Lacertidae ,anchored hybrid enrichment ,RNA sequencing ,physiological adaptations ,bioclimate ,Phylogenetics ,Diversification ,Evolution ,Science ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,Diversification (marketing strategy) ,Biology ,010603 evolutionary biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Environmental ,03 medical and health sciences ,Temperate climate ,Evolutionary Biology ,Herpetology ,Molecular ,General Chemistry ,030104 developmental biology ,13. Climate action ,Evolutionary biology ,Thermal physiology ,lcsh:Q - Abstract
WOS: 000484779500005, PubMed ID: 31501432, Climatic conditions changing over time and space shape the evolution of organisms at multiple levels, including temperate lizards in the family Lacertidae. Here we reconstruct a dated phylogenetic tree of 262 lacertid species based on a supermatrix relying on novel phylogenomic datasets and fossil calibrations. Diversification of lacertids was accompanied by an increasing disparity among occupied bioclimatic niches, especially in the last 10 Ma, during a period of progressive global cooling. Temperate species also underwent a genomewide slowdown in molecular substitution rates compared to tropical and desert-adapted lacertids. Evaporative water loss and preferred temperature are correlated with bioclimatic parameters, indicating physiological adaptations to climate. Tropical, but also some populations of cool-adapted species experience maximum temperatures close to their preferred temperatures. We hypothesize these species-specific physiological preferences may constitute a handicap to prevail under rapid global warming, and contribute to explaining local lizard extinctions in cool and humid climates., Deutsche Forschungsgemeinschaft (DFG)German Research Foundation (DFG) [VE 247/11-1/MU 1760/9-1, VE 247/16-1-HO3492/6-1]; Juan de la Cierva fellowships from the Spanish 'Ministerio de Economia y Competitividad' [FJCI-2014-20380, IJCI-2016-29566]; 'Rita Levi Montalcini' program for recruitment of young researchers at the University of L'Aquila; US-National Science Foundation Emerging Frontiers program [EF-1241848]; Hassan II Academy of Sciences and Technologies (ICGVSA Project); Slovenian Research Agency Research Program [P1-0255]; Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) [SNIC 2017/7-275]; [NORTE-01-0145-FEDER-000007]; [ON173025 MESTD RS], We are grateful to numerous students, field assistants and technicians who supported field and laboratory work, and to G. Jones for useful comments on the manuscript. This study was supported by the Deutsche Forschungsgemeinschaft (DFG) to M.V. and J.M. (VE 247/11-1/MU 1760/9-1), and to L.R. in the framework of the "TaxonOmics" priority program (VE 247/16-1-HO3492/6-1). J.G.-P. and I. I. were supported by Juan de la Cierva fellowships from the Spanish 'Ministerio de Economia y Competitividad' (FJCI-2014-20380 and IJCI-2016-29566), D.S. by the 'Rita Levi Montalcini' program for recruitment of young researchers at the University of L'Aquila, M.A.C. by project NORTE-01-0145-FEDER-000007, B.S. and D.B.M. by the US-National Science Foundation Emerging Frontiers program (EF-1241848), J.C.I. by project ON173025 MESTD RS, T.S., A.F., and A.S. by the Hassan II Academy of Sciences and Technologies (ICGVSA Project), A.Z. by the Slovenian Research Agency Research Program P1-0255. The computations were in part performed on the Altamira supercomputer at the Institute of Physics of Cantabria (IFCA-CSIC), Spain; the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) under Project SNIC 2017/7-275; as well as the Zentraler Informations-und Datenverarbeitungsservice of the Tierarztliche Hochschule Hannover (IDS-TiHo). Further, we acknowledge the Viper High Performance Computing facility of the University of Hull and its support team, especially Ahmed Elnawasany, for facilitating computational analyses.
- Published
- 2019