1. Exploiting SERS sensitivity to monitor DNA aggregation properties
- Author
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Paolo Postorino, Debora Caprara, Marina Ceccarini, Angela Capocefalo, Caterina Petrillo, and Francesca Ripanti
- Subjects
Materials science ,Silver ,DNA, Single-Stranded ,Metal Nanoparticles ,Nanotechnology ,02 engineering and technology ,Hydroxylamine ,Spectrum Analysis, Raman ,Melting profile ,Nucleic Acid Denaturation ,Biochemistry ,DNA sequencing ,Silver nanoparticle ,DNA self-assembly ,SERS spectroscopy ,Silver nanoparticles ,Base Pairing ,DNA ,Single-Stranded ,Desiccation ,Hydrogen Bonding ,Solutions ,Spectrum Analysis ,Raman ,Temperature ,Nucleic Acid Hybridization ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Complementary DNA ,Molecular Biology ,Plasmon ,030304 developmental biology ,0303 health sciences ,Melting pmfile ,Hydrogen bond ,DNA–DNA hybridization ,General Medicine ,Surface-enhanced Raman spectroscopy ,021001 nanoscience & nanotechnology ,chemistry ,0210 nano-technology - Abstract
In the last decades, DNA has been considered far more than the system carrying the essential genetic instructions. Indeed, because of the remarkable properties of the base-pairing specificity and thermoreversibility of the interactions, DNA plays a central role in the design of innovative architectures at the nanoscale. Here, combining complementary DNA strands with a custom-made solution of silver nanoparticles, we realize plasmonic aggregates to exploit the sensitivity of Surface Enhanced Raman Spectroscopy (SERS) for the identification/detection of the distinctive features of DNA hybridization, both in solution and on dried samples. Moreover, SERS allows monitoring the DNA aggregation process by following the temperature variation of a specific spectroscopic marker associated with the Watson-Crick hydrogen bond formation. This temperature-dependent behavior enables us to precisely reconstruct the melting profile of the selected DNA sequences by spectroscopic measurements only.
- Published
- 2021
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