1. Molecular mechanisms of Evening Complex activity in Arabidopsis
- Author
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Stephanie Hutin, Chloe Zubieta, Jaehoon Jung, Philip A. Wigge, Véronique Hugouvieux, Xuelei Lai, Catarina S. Silva, Max H. Nanao, Kishore C. S. Panigrahi, Aditya Nayak, Irene López-Vidriero, José Manuel Franco-Zorrilla, StructDev (StructDev), Physiologie cellulaire et végétale (LPCV), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Grenoble Alpes (UGA), Dept of Biological Sciences, Sungkyunkwan University, Centro Nacional de Biotecnología [Madrid] (CNB-CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Plant Biology Laboratory, School of Biological Sciences, Bhubaneshwar, European Synchrotron Radiation Facility (ESRF), Department for Plant Adaptation, Leibniz-Institut für Gemüse- und Zierpflanzenbau, ANR-10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010), ANR-10-LABX-0049,GRAL,Grenoble Alliance for Integrated Structural Cell Biology(2010), ANR-17-EURE-0003,CBH-EUR-GS,CBH-EUR-GS(2017), European Project: 283570,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2011-1,BIOSTRUCT-X(2011), Agence Nationale de la Recherche (France), European Molecular Biology Laboratory, European Commission, Université Grenoble Alpes, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS), and Department of Plant Molecular Genetics, Centro Nacional de Biotecnologia
- Subjects
0106 biological sciences ,plant ,Protein-DNA complex ,Circadian clock ,01 natural sciences ,DNA-binding protein ,thermomorphogenesis ,Evening Complex ,03 medical and health sciences ,chemistry.chemical_compound ,Transcriptional repressor complex ,Arabidopsis ,circadian clock ,EARLY FLOWERING 3 ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,LUX ARRHYTHMO ,gene regulation ,protein–DNA complex ,Protein–DNA complex ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,Multidisciplinary ,biology ,thermosensor ,food and beverages ,DNA-binding domain ,ELF4 ,biology.organism_classification ,DNA binding protein ,In vitro ,Gene regulation ,ELF3 ,transcriptional repressor complex ,chemistry ,Biophysics ,DNA ,010606 plant biology & botany - Abstract
The Evening Complex (EC), composed of the DNA binding protein LUX ARRHYTHMO (LUX) and two additional proteins EARLY FLOWERING 3 (ELF3) and ELF4, is a transcriptional repressor complex and a core component of the plant circadian clock. In addition to maintaining oscillations in clock gene expression, the EC also participates in temperature and light entrainment, acting as an important environmental sensor and conveying this information to growth and developmental pathways. However, the molecular basis for EC DNA binding specificity and temperature-dependent activity were not known. Here, we solved the structure of the DNA binding domain of LUX in complex with DNA. Residues critical for high-affinity binding and direct base readout were determined and tested via site-directed mutagenesis in vitro and in vivo. Using extensive in vitro DNA binding assays of LUX alone and in complex with ELF3 and ELF4, we demonstrate that, while LUX alone binds DNA with high affinity, the LUX–ELF3 complex is a relatively poor binder of DNA. ELF4 restores binding to the complex. In vitro, the full EC is able to act as a direct thermosensor, with stronger DNA binding at 4 °C and weaker binding at 27 °C. In addition, an excess of ELF4 is able to restore EC binding even at 27 °C. Taken together, these data suggest that ELF4 is a key modulator of thermosensitive EC activity., Proceedings of the National Academy of Sciences of the United States of America, 117 (12), ISSN:0027-8424, ISSN:1091-6490
- Published
- 2020