1. Genetic diversity, antimicrobial resistance and extended-spectrum β-lactamase type of Escherichia coli isolates from chicken, dog, pig and yak in Gansu and Qinghai Provinces, China
- Author
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Wen Hu, Jian-hua Zhou, Lu Zhao, Gong Xiaowei, Youquan Li, K. Tarasiuk, Cao Xiao'an, Jing Wenxian, Yong-sheng Liu, Yining Wang, Lan Xi, Zygmunt Pejsak, Chen Qiwei, Laszlo Stipkvits, Xuerui Li, Susan Szathmary, and Li-na Ma
- Subjects
0301 basic medicine ,Microbiology (medical) ,China ,Tetracycline ,Swine ,030106 microbiology ,Immunology ,Multilocus sequence typing ,Drug resistance ,Biology ,medicine.disease_cause ,Microbiology ,beta-Lactamases ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Dogs ,Extended-spectrum β-lactamase ,Ampicillin ,Drug Resistance, Bacterial ,medicine ,Escherichia coli ,Immunology and Allergy ,Animals ,030212 general & internal medicine ,Typing ,Escherichia coli Infections ,Phylogeny ,Genetic diversity ,Escherichia coli Proteins ,Genetic Variation ,QR1-502 ,Anti-Bacterial Agents ,ESBL ,Cattle ,Chickens ,PCR phylogenetic typing ,medicine.drug - Abstract
Objectives In this study, the genetic diversity, phylogenetic grouping, antimicrobial resistance and extended-spectrum β-lactamase (ESBL) types of Escherichia coli isolates from chickens, dogs, pigs and yaks in six prefectures of Gansu and Qinghai Provinces, China, were investigated. Methods E. coli was isolated from diarrhoeic and healthy faecal samples. Multilocus sequence typing (MLST), phylogenetic grouping, antimicrobial resistance and ESBL profiles were investigated. Results A total of 142 MLST sequence types (STs) were identified from 400 E. coli isolates. eBURST clustering analysis resolved the 142 STs into 19 clonal complexes (CCs) and 67 singletons. PCR phylogenetic typing determined the isolation rate of potentially pathogenic B2/D group isolates among all E. coli to be 12.5% from healthy animal samples and 17.5% from diarrhoeic samples. Antimicrobial susceptibility testing revealed 78 antimicrobial resistance patterns. E. coli resistance rates were highest to doxycycline, ampicillin and tetracycline, whereas polymyxin B and meropenem had the lowest resistance rates. All polymyxin B-resistant E. coli isolates were positive for the mcr-1 gene. A total of 62 ESBL-producing isolates were identified. The ESBL prevalence was 55.0% in diarrhoeic samplings and 5.6% in healthy animals. TEM (82.3%) was the predominant ESBL type, followed by CTM (43.5%) and SHV (19.4%). Conclusion E. coli isolates in the study area have a high diversity of genetic and antimicrobial resistance patterns but a relatively low isolation rate of potentially pathogenic phylogroups. However, the somewhat high isolation rate of multidrug-resistant E. coli, particularly ESBL-producing isolates, requires continual surveillance of E. coli from animals in these areas.
- Published
- 2020