1. Chromosome-free bacterial cells are safe and programmable platforms for synthetic biology
- Author
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Manuela Gesell Salazar, Christoph M. Decker, Aidong Yang, Hua Ye, Ian P. Thompson, Hong Zeng, Catherine Fan, C. Neil Hunter, Wei E. Huang, Frank Schmidt, Helen E. Townley, Khemmathin Lueangwattanapong, Paul A. Davison, Zhanfeng Cui, and Robert Habgood
- Subjects
Cell ,Catechols ,Heterologous ,Antineoplastic Agents ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Synthetic biology ,Drug Delivery Systems ,Neoplasms ,Escherichia coli ,Tumor Cells, Cultured ,medicine ,cancer ,Gene Regulatory Networks ,Gene ,Cell Proliferation ,030304 developmental biology ,bacterial therapy ,0303 health sciences ,Multidisciplinary ,SimCells ,Artificial cell ,biology ,Pseudomonas putida ,030306 microbiology ,Chemistry ,Chromosomes, Bacterial ,Biological Sciences ,Cellular Reprogramming ,biology.organism_classification ,Cell biology ,medicine.anatomical_structure ,Cancer cell ,Cupriavidus necator ,Synthetic Biology ,Genetic Engineering ,minimal genome - Abstract
Significance We constructed simple cells (SimCells) whose native chromosomes were removed and replaced by synthetic genetic circuits. The chromosome-free SimCells can process designed DNA and express target genes for an extended period of time. The strategy of SimCell generation is applicable to most bacteria, creating a universal platform for reprogramming bacteria. We demonstrated that SimCells can be designed as safe agents for bacterial therapy through synthesis and delivery of a potent anticancer drug against a variety of cancer cell lines. This showed that the nonreplicating and programmable property of SimCells is advantageous for applications in sensitive environments. The results of this work will both improve our understanding of natural living systems and simultaneously lay the foundations for future advances in synthetic biology., A type of chromosome-free cell called SimCells (simple cells) has been generated from Escherichia coli, Pseudomonas putida, and Ralstonia eutropha. The removal of the native chromosomes of these bacteria was achieved by double-stranded breaks made by heterologous I-CeuI endonuclease and the degradation activity of endogenous nucleases. We have shown that the cellular machinery remained functional in these chromosome-free SimCells and was able to process various genetic circuits. This includes the glycolysis pathway (composed of 10 genes) and inducible genetic circuits. It was found that the glycolysis pathway significantly extended longevity of SimCells due to its ability to regenerate ATP and NADH/NADPH. The SimCells were able to continuously express synthetic genetic circuits for 10 d after chromosome removal. As a proof of principle, we demonstrated that SimCells can be used as a safe agent (as they cannot replicate) for bacterial therapy. SimCells were used to synthesize catechol (a potent anticancer drug) from salicylic acid to inhibit lung, brain, and soft-tissue cancer cells. SimCells represent a simplified synthetic biology chassis that can be programmed to manufacture and deliver products safely without interference from the host genome.
- Published
- 2020
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