1. Transcriptome analysis of immune-related genes in Sesarmops sinensis hepatopancreas in reaction to peptidoglycan challenge
- Author
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Mei-Ling Zhang, Qiu-Ning Liu, Ying-Yu Tang, Si-Pei Zhang, Bo-Ping Tang, Jiang Senhao, Gang Wang, Bao-Ming Ge, Chun-Lin Zhou, Yue-Tian Li, and Dai-Zhen Zhang
- Subjects
0106 biological sciences ,Brachyura ,Hepatopancreas ,Stimulation ,Peptidoglycan ,Biology ,01 natural sciences ,Immune related genes ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,Immune system ,Genetics ,Animals ,Gene ,Pathogen ,Ecosystem ,030304 developmental biology ,0303 health sciences ,Gene Expression Profiling ,biology.organism_classification ,chemistry ,010606 plant biology & botany - Abstract
Sesarmops sinensis is a dominant omnivorous crab species, which plays an important ecological function in salt marsh ecosystems. To better understand its immune system and immune related genes under pathogen infection, the transcriptome was analyzed by comparing the data of S. sinensis hepatopancreas stimulated by PBS and PGN. A set of assembly and annotation identified 39,039 unigenes with an average length of 1105 bp, obtaining 1300 differentially expressed genes (DEGs) in all, which included 466 remarkably up-regulated unigenes and 834 remarkably down-regulated unigenes. In addition, based on mensurable real time-polymerase chain reaction and high-throughput sequencing, several immune responsive genes were found to be markedly up-regulated under PGN stimulation. In conclusion, in addition to enriching the existing transcriptome data of S. sinensis, this study also clarified the immune response of S. sinensis to PGN stimulation, which will help us to further understand the crustacean's immune system.
- Published
- 2021
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