1. Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
- Author
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Casey O. Swoboda, Matthew T. Weirauch, Douglas P. Millay, Kashish Chetal, Nathan Salomonis, Xiaoting Chen, Michael J. Petrany, and Chengyi Sun
- Subjects
0301 basic medicine ,Male ,Cell type ,Cytoplasm ,Science ,Muscle Fibers, Skeletal ,Neuromuscular Junction ,General Physics and Astronomy ,RNA-Seq ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Neuromuscular junction ,Article ,Tendons ,03 medical and health sciences ,Genetic Heterogeneity ,Mice ,0302 clinical medicine ,Multinucleate ,medicine ,Myocyte ,Animals ,Muscle, Skeletal ,Gene ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,Multidisciplinary ,Sequence Analysis, RNA ,Skeletal muscle ,Musculoskeletal development ,General Chemistry ,Genomics ,Cell biology ,Mice, Inbred C57BL ,030104 developmental biology ,medicine.anatomical_structure ,Gene expression ,Nucleus ,030217 neurology & neurosurgery - Abstract
While the majority of cells contain a single nucleus, cell types such as trophoblasts, osteoclasts, and skeletal myofibers require multinucleation. One advantage of multinucleation can be the assignment of distinct functions to different nuclei, but comprehensive interrogation of transcriptional heterogeneity within multinucleated tissues has been challenging due to the presence of a shared cytoplasm. Here, we utilized single-nucleus RNA-sequencing (snRNA-seq) to determine the extent of transcriptional diversity within multinucleated skeletal myofibers. Nuclei from mouse skeletal muscle were profiled across the lifespan, which revealed the presence of distinct myonuclear populations emerging in postnatal development as well as aging muscle. Our datasets also provided a platform for discovery of genes associated with rare specialized regions of the muscle cell, including markers of the myotendinous junction and functionally validated factors expressed at the neuromuscular junction. These findings reveal that myonuclei within syncytial muscle fibers possess distinct transcriptional profiles that regulate muscle biology., Mammalian skeletal muscle is composed of multinucleated myofibers, containing hundreds of nuclei that coordinate cellular function. Here, the authors show that single-nucleus RNA-sequencing reveals rare and emergent myonuclear populations, and uncovers dynamic transcriptional heterogeneity in development and aging.
- Published
- 2020