1. Analysis of the complementarity determining regions β-chain genomic rearrangement using high-throughput sequencing in periphery cytotoxic T lymphocytes of patients with chronic hepatitis B
- Author
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Lin Fu, Junhui Wang, Fan Zhibo, Liping Wu, Jun Lu, Yinuo Huang, Gang Luo, Dazheng Han, Wenyi Yang, Ruimin Sun, Shutang Wei, and Hong Ma
- Subjects
0301 basic medicine ,Hepatitis B virus ,Cancer Research ,Complementarity determining region ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Biochemistry ,Peripheral blood mononuclear cell ,immune response ,Virus ,DNA sequencing ,03 medical and health sciences ,Hepatitis B, Chronic ,0302 clinical medicine ,Genetics ,medicine ,Humans ,Cytotoxic T cell ,chronic hepatitis B ,Gene Rearrangement, beta-Chain T-Cell Antigen Receptor ,Molecular Biology ,Gene ,cytotoxic T cells ,T-cell receptor ,high-throughput sequencing ,High-Throughput Nucleotide Sequencing ,Articles ,Sequence Analysis, DNA ,Complementarity Determining Regions ,030104 developmental biology ,Oncology ,Immunology ,Molecular Medicine ,030211 gastroenterology & hepatology ,T cell receptor ,T-Lymphocytes, Cytotoxic - Abstract
Cytotoxic T lymphocytes (CTLs) are important for the recognition of the hepatitis B virus (HBV), mediating immunoprotective mechanisms and determining the clinical outcome following HBV infection. CTLs recognize the invading virus via the T cell receptor (TCR). The aim of the current study was to investigate the variability of TCR in lymphocytes from patients with chronic hepatitis B and whether TCR genomic recombination is regulated by the current treatment strategies. Peripheral blood mononuclear cells (PBMCs) were isolated from patients with chronic hepatitis B and high‑throughput sequencing was performed to analyze the gene expression diversity of β chain complementarity determining region. High‑throughput sequencing produced ~380,000 reads. The sequences of V and J family mRNAs of the β chain V area were analyzed and databases were created for all 30 V family and J family genes. Using the Basic Local Alignment Search Tool, 15 genes were identified to be upregulated in the samples following treatment. Among them, the expression of T cell receptor β variable 28 (TRBV28)_T cell receptor β joining 1‑5 (TRBJ1.5) and TRBV6_TRBJ2.10 were significantly different in the treated samples compared with samples taken prior to treatment. Genomic recombination patterns of TRBV and TRBJ of the β chain V area were observed to be different in the samples following treatment. The data of the current study demonstrated that the genomic rearrangement of the V and J segments of TCR β chain V area may be associated with the chronic progression of HBV and impact on treatment efficacy.
- Published
- 2016