4 results on '"Ieva Golubickaite"'
Search Results
2. Variant PNLDC1, Defective piRNA Processing, and Azoospermia
- Author
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Liina Nagirnaja, Kristian Almstrup, Sofia B. Winge, Donald F. Conrad, Kenneth I. Aston, Filipa Carvalho, Peter N. Schlegel, Nina Mørup, Niels E. Skakkebæk, Alexandra M. Lopes, Niels Jørgensen, C. Joana Marques, Francesca Khani, Ieva Golubickaite, John E. Nielsen, Manon S. Oud, Ewa Rajpert-De Meyts, Joris A. Veltman, Rytis Stakaitis, and Godfried W. van der Heijden
- Subjects
endocrine system ,Sequence analysis ,Piwi-interacting RNA ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,medicine ,Nucleotide ,030304 developmental biology ,chemistry.chemical_classification ,Azoospermia ,0303 health sciences ,Mutation ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,business.industry ,urogenital system ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,RNA ,General Medicine ,medicine.disease ,Phenotype ,Cell biology ,chemistry ,030220 oncology & carcinogenesis ,business - Abstract
Item does not contain fulltext BACKGROUND: P-element-induced wimpy testis (PIWI)-interacting RNAs (piRNAs) are short (21 to 35 nucleotides in length) and noncoding and are found almost exclusively in germ cells, where they regulate aberrant expression of transposable elements and postmeiotic gene expression. Critical to the processing of piRNAs is the protein poly(A)-specific RNase-like domain containing 1 (PNLDC1), which trims their 3' ends and, when disrupted in mice, causes azoospermia and male infertility. METHODS: We performed exome sequencing on DNA samples from 924 men who had received a diagnosis of nonobstructive azoospermia. Testicular-biopsy samples were analyzed by means of histologic and immunohistochemical tests, in situ hybridization, reverse-transcriptase-quantitative-polymerase-chain-reaction assay, and small-RNA sequencing. RESULTS: Four unrelated men of Middle Eastern descent who had nonobstructive azoospermia were found to carry mutations in PNLDC1: the first patient had a biallelic stop-gain mutation, p.R452Ter (rs200629089; minor allele frequency, 0.00004); the second, a novel biallelic missense variant, p.P84S; the third, two compound heterozygous mutations consisting of p.M259T (rs141903829; minor allele frequency, 0.0007) and p.L35PfsTer3 (rs754159168; minor allele frequency, 0.00004); and the fourth, a novel biallelic canonical splice acceptor site variant, c.607-2A→T. Testicular histologic findings consistently showed error-prone meiosis and spermatogenic arrest with round spermatids of type Sa as the most advanced population of germ cells. Gene and protein expression of PNLDC1, as well as the piRNA-processing proteins PIWIL1, PIWIL4, MYBL1, and TDRKH, were greatly diminished in cells of the testes. Furthermore, the length distribution of piRNAs and the number of pachytene piRNAs was significantly altered in men carrying PNLDC1 mutations. CONCLUSIONS: Our results suggest a direct mechanistic effect of faulty piRNA processing on meiosis and spermatogenesis in men, ultimately leading to male infertility. (Funded by Innovation Fund Denmark and others.).
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- 2021
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3. Small RNAs in Seminal Plasma as Novel Biomarkers for Germ Cell Tumors
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Kristian Almstrup, Ieva Golubickaite, Marlene Danner Dalgaard, Nina Mørup, Mikkel H. Schierup, Rytis Stakaitis, Meritxell Riera, Gedske Daugaard, Niels Jørgensen, and Anders Juul
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0301 basic medicine ,Circulating mirnas ,Cancer Research ,endocrine system ,Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Testicular cancer ,SDG 3 - Good Health and Well-being ,small RNAs ,medicine ,diagnostics ,Diagnostics ,RC254-282 ,Intratubular germ cell neoplasia ,Small RNAs ,Area under the curve ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Testicular germ cell ,testicular cancer ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Germ cell tumors - Abstract
Circulating miRNAs secreted by testicular germ cell tumors (TGCT) show great potential as novel non-invasive biomarkers for diagnosis of TGCT. Seminal plasma (SP) represents a biofluid closer to the primary site. Here, we investigate whether small RNAs in SP can be used to diagnose men with TGCTs or the precursor lesions, germ cell neoplasia in situ (GCNIS). Small RNAs isolated from SP from men with TGCTs (n = 18), GCNIS-only (n = 5), and controls (n = 25) were sequenced. SP from men with TGCT/GCNIS (n = 37) and controls (n = 22) were used for validation by RT-qPCR. In general, piRNAs were found at lower levels in SP from men with TGCTs. Ten small RNAs were found at significantly (q-value <, 0.05) different levels in SP from men with TGCT/GCNIS than controls. Random forests classification identified sets of small RNAs that could detect either TGCT/GCNIS or GCNIS-only with an area under the curve of 0.98 and 1 in ROC analyses, respectively. RT-qPCR validated hsa-miR-6782-5p to be present at 2.3-fold lower levels (p = 0.02) in the SP from men with TGCTs compared with controls. Small RNAs in SP show potential as novel biomarkers for diagnosing men with TGCT/GCNIS but validation in larger cohorts is needed.
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- 2021
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4. POLG Gene Variants in Cervical Cancer Patients and Their Associations with Clinical and Pathomorphological Tumor Characteristics
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Jurgita Beniusyte, Arturas Inciura, Rasa Ugenskiene, Ieva Golubickaite, Egle Ziliene, Lina Poskiene, and Elona Juozaityte
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Oncology ,medicine.medical_specialty ,cervical cancer ,Disease ,POLG ,Article ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,SNV ,Genotype ,Medicine ,tumor phenotype ,030212 general & internal medicine ,Stage (cooking) ,Risk factor ,Allele ,Gene ,Cervical cancer ,business.industry ,outcome ,General Medicine ,medicine.disease ,030220 oncology & carcinogenesis ,Adenocarcinoma ,business - Abstract
Cervical cancer is one of the most common cancers in women worldwide. Human papillomaviruses are known to be the main, but not the only risk factor, of this cancer type. Despite all the knowledge on this cancer type, it is still a challenge to predict the course of the disease, and therefore, minimally invasive biomarkers are needed. This study aimed to analyze single-nucleotide variants in the POLG gene and assess the associations with tumor phenotype and patient outcome. A total of 172 cervical cancer patients were included in this study. Clinical and tumor data were gathered from medical records retrospectively. Single nucleotide variations were determined using TaqMan probes with Real-Time PCR. Significant associations between POLG rs3087374 and cervical cancer patients’ tumor histological type, stage, and tumor size were determined. The CA genotype and A allele of rs3087374 increased the probability of adenocarcinoma histological tumor type, IIIA stage, and T3 tumor size compared to CC genotype and C allele, respectively. Furthermore, patients with AA genotype in rs2072267 had longer metastasis-free survival than those with the GG genotype. Our data suggest that mitochondrial polymerase gamma encoded by nuclear POLG gene is important for specific tumor phenotype formation and patient outcome in cervical cancer.
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- 2021
- Full Text
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