1. TISIDB: an integrated repository portal for tumor–immune system interactions
- Author
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Jia Yi Zhong, Jiangwen Zhang, Beibei Ru, Chit Ying Lau, Choi Yiu Wong, Ka Chi Chu, CN Wong, Ian Chen, Yin Tong, Nam Wai Chan, Sophia Shek Wa Zhong, and Wai Chung Wu
- Subjects
Statistics and Probability ,Treatment response ,Genomic profiling ,medicine.medical_treatment ,Computational biology ,Biology ,Biochemistry ,03 medical and health sciences ,Immune system ,Neoplasms ,medicine ,Humans ,Molecular Biology ,Gene ,030304 developmental biology ,Supplementary data ,0303 health sciences ,Publications ,030302 biochemistry & molecular biology ,Cancer ,Immunotherapy ,medicine.disease ,Computer Science Applications ,Computational Mathematics ,Computational Theory and Mathematics ,Immune System ,Cancer development ,Algorithms ,Software - Abstract
Summary The interaction between tumor and immune system plays a crucial role in both cancer development and treatment response. To facilitate comprehensive investigation of tumor–immune interactions, we have designed a user-friendly web portal TISIDB, which integrated multiple types of data resources in oncoimmunology. First, we manually curated 4176 records from 2530 publications, which reported 988 genes related to anti-tumor immunity. Second, genes associated with the resistance or sensitivity of tumor cells to T cell-mediated killing and immunotherapy were identified by analyzing high-throughput screening and genomic profiling data. Third, associations between any gene and immune features, such as lymphocytes, immunomodulators and chemokines, were pre-calculated for 30 TCGA cancer types. In TISIDB, biologists can cross-check a gene of interest about its role in tumor–immune interactions through literature mining and high-throughput data analysis, and generate testable hypotheses and high quality figures for publication. Availability and implementation http://cis.hku.hk/TISIDB Supplementary information Supplementary data are available at Bioinformatics online.
- Published
- 2019
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